HEADER HYDROLASE 15-APR-11 3RJT TITLE CRYSTAL STRUCTURE OF LIPOLYTIC PROTEIN G-D-S-L FAMILY FROM TITLE 2 ALICYCLOBACILLUS ACIDOCALDARIUS SUBSP. ACIDOCALDARIUS DSM 446 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOLYTIC PROTEIN G-D-S-L FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALICYCLOBACILLUS ACIDOCALDARIUS SUBSP. SOURCE 3 ACIDOCALDARIUS; SOURCE 4 ORGANISM_TAXID: 521098; SOURCE 5 STRAIN: ATCC 27009 / DSM 446 / 104-1A; SOURCE 6 GENE: AACI_2599; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PMCSG7 KEYWDS PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,G.CHHOR,J.BEARDEN,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 1 27-APR-11 3RJT 0 JRNL AUTH C.CHANG,G.CHHOR,J.BEARDEN,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF LIPOLYTIC PROTEIN G-D-S-L FAMILY FROM JRNL TITL 2 ALICYCLOBACILLUS ACIDOCALDARIUS SUBSP. ACIDOCALDARIUS DSM JRNL TITL 3 446 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 98129 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.154 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4898 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6758 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.1570 REMARK 3 BIN FREE R VALUE SET COUNT : 320 REMARK 3 BIN FREE R VALUE : 0.1980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3374 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 549 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.40000 REMARK 3 B22 (A**2) : 0.40000 REMARK 3 B33 (A**2) : -0.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.054 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.050 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.025 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.424 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3751 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5136 ; 1.564 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 479 ;15.072 ; 5.084 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;33.235 ;22.179 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 589 ;12.291 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;14.526 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 564 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2952 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2301 ; 1.566 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3756 ; 2.499 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1450 ; 3.795 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1380 ; 5.571 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3751 ; 1.851 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6809 16.8176 19.9387 REMARK 3 T TENSOR REMARK 3 T11: 0.0042 T22: 0.0029 REMARK 3 T33: 0.0007 T12: 0.0003 REMARK 3 T13: 0.0000 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.0182 L22: 0.0068 REMARK 3 L33: 0.0093 L12: 0.0044 REMARK 3 L13: -0.0030 L23: -0.0010 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: 0.0008 S13: -0.0005 REMARK 3 S21: -0.0009 S22: 0.0004 S23: -0.0004 REMARK 3 S31: 0.0000 S32: -0.0008 S33: -0.0005 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 212 REMARK 3 ORIGIN FOR THE GROUP (A): 26.1263 28.6850 48.0459 REMARK 3 T TENSOR REMARK 3 T11: 0.0038 T22: 0.0046 REMARK 3 T33: 0.0006 T12: 0.0002 REMARK 3 T13: -0.0003 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0001 L22: 0.0209 REMARK 3 L33: 0.0042 L12: 0.0015 REMARK 3 L13: -0.0007 L23: -0.0093 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0003 S13: 0.0001 REMARK 3 S21: 0.0014 S22: 0.0003 S23: 0.0009 REMARK 3 S31: -0.0011 S32: -0.0001 S33: -0.0003 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3RJT COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-11. REMARK 100 THE RCSB ID CODE IS RCSB065019. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 98222 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 28.800 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 65.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 28.90 REMARK 200 R MERGE FOR SHELL (I) : 0.81500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, DM, SHELXDE, RESOLVE, ARP/WARP, REMARK 200 COOT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULFATE, 0.1M MES PH REMARK 280 6.5, 10% DIOXANE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.20750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.20750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.20750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.20750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.20750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.20750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.20750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.20750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 29 O HOH A 528 1.89 REMARK 500 O HOH B 338 O HOH B 517 1.92 REMARK 500 O HOH B 325 O HOH B 449 2.05 REMARK 500 OE2 GLU A 164 O HOH A 433 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 311 O HOH B 471 4455 1.97 REMARK 500 O HOH B 338 O HOH B 338 7556 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 158 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG B 158 NE - CZ - NH2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 13 -153.94 -106.30 REMARK 500 ARG A 29 -118.92 68.95 REMARK 500 ASP A 190 19.53 -157.85 REMARK 500 MSE B 1 144.02 -34.30 REMARK 500 ASP B 13 -152.64 -104.35 REMARK 500 ARG B 29 -122.68 66.62 REMARK 500 ASP B 190 17.26 -157.54 REMARK 500 VAL B 192 -50.53 -124.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 383 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A 394 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 412 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 456 DISTANCE = 5.59 ANGSTROMS REMARK 525 HOH B 294 DISTANCE = 5.01 ANGSTROMS REMARK 525 HOH B 354 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH B 357 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B 359 DISTANCE = 5.95 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC100326 RELATED DB: TARGETDB DBREF 3RJT A 1 213 UNP C8WT89 C8WT89_ALIAD 1 213 DBREF 3RJT B 1 213 UNP C8WT89 C8WT89_ALIAD 1 213 SEQADV 3RJT SER A -2 UNP C8WT89 EXPRESSION TAG SEQADV 3RJT ASN A -1 UNP C8WT89 EXPRESSION TAG SEQADV 3RJT ALA A 0 UNP C8WT89 EXPRESSION TAG SEQADV 3RJT VAL A 212 UNP C8WT89 ALA 212 CONFLICT SEQADV 3RJT SER B -2 UNP C8WT89 EXPRESSION TAG SEQADV 3RJT ASN B -1 UNP C8WT89 EXPRESSION TAG SEQADV 3RJT ALA B 0 UNP C8WT89 EXPRESSION TAG SEQADV 3RJT VAL B 212 UNP C8WT89 ALA 212 CONFLICT SEQRES 1 A 216 SER ASN ALA MSE ILE GLU PRO GLY SER LYS LEU VAL MSE SEQRES 2 A 216 VAL GLY ASP SER ILE THR ASP CSO GLY ARG ALA HIS PRO SEQRES 3 A 216 VAL GLY GLU ALA PRO ARG GLY GLY LEU GLY ASN GLY TYR SEQRES 4 A 216 VAL ALA LEU VAL ASP ALA HIS LEU GLN VAL LEU HIS PRO SEQRES 5 A 216 ASP TRP ARG ILE ARG VAL VAL ASN VAL GLY THR SER GLY SEQRES 6 A 216 ASN THR VAL ALA ASP VAL ALA ARG ARG TRP GLU ASP ASP SEQRES 7 A 216 VAL MSE ALA LEU GLN PRO ASP TYR VAL SER LEU MSE ILE SEQRES 8 A 216 GLY VAL ASN ASP VAL TRP ARG GLN PHE ASP MSE PRO LEU SEQRES 9 A 216 VAL VAL GLU ARG HIS VAL GLY ILE ASP GLU TYR ARG ASP SEQRES 10 A 216 THR LEU ARG HIS LEU VAL ALA THR THR LYS PRO ARG VAL SEQRES 11 A 216 ARG GLU MSE PHE LEU LEU SER PRO PHE TYR LEU GLU PRO SEQRES 12 A 216 ASN ARG SER ASP PRO MSE ARG LYS THR VAL ASP ALA TYR SEQRES 13 A 216 ILE GLU ALA MSE ARG ASP VAL ALA ALA SER GLU HIS VAL SEQRES 14 A 216 PRO PHE VAL ASP VAL GLN ALA GLU PHE ASP ARG LEU LEU SEQRES 15 A 216 ALA HIS LEU ASN THR TRP VAL LEU ALA PRO ASP ARG VAL SEQRES 16 A 216 HIS PRO TYR LEU ASN GLY HIS LEU VAL ILE ALA ARG ALA SEQRES 17 A 216 PHE LEU THR ALA VAL GLY VAL LEU SEQRES 1 B 216 SER ASN ALA MSE ILE GLU PRO GLY SER LYS LEU VAL MSE SEQRES 2 B 216 VAL GLY ASP SER ILE THR ASP CSO GLY ARG ALA HIS PRO SEQRES 3 B 216 VAL GLY GLU ALA PRO ARG GLY GLY LEU GLY ASN GLY TYR SEQRES 4 B 216 VAL ALA LEU VAL ASP ALA HIS LEU GLN VAL LEU HIS PRO SEQRES 5 B 216 ASP TRP ARG ILE ARG VAL VAL ASN VAL GLY THR SER GLY SEQRES 6 B 216 ASN THR VAL ALA ASP VAL ALA ARG ARG TRP GLU ASP ASP SEQRES 7 B 216 VAL MSE ALA LEU GLN PRO ASP TYR VAL SER LEU MSE ILE SEQRES 8 B 216 GLY VAL ASN ASP VAL TRP ARG GLN PHE ASP MSE PRO LEU SEQRES 9 B 216 VAL VAL GLU ARG HIS VAL GLY ILE ASP GLU TYR ARG ASP SEQRES 10 B 216 THR LEU ARG HIS LEU VAL ALA THR THR LYS PRO ARG VAL SEQRES 11 B 216 ARG GLU MSE PHE LEU LEU SER PRO PHE TYR LEU GLU PRO SEQRES 12 B 216 ASN ARG SER ASP PRO MSE ARG LYS THR VAL ASP ALA TYR SEQRES 13 B 216 ILE GLU ALA MSE ARG ASP VAL ALA ALA SER GLU HIS VAL SEQRES 14 B 216 PRO PHE VAL ASP VAL GLN ALA GLU PHE ASP ARG LEU LEU SEQRES 15 B 216 ALA HIS LEU ASN THR TRP VAL LEU ALA PRO ASP ARG VAL SEQRES 16 B 216 HIS PRO TYR LEU ASN GLY HIS LEU VAL ILE ALA ARG ALA SEQRES 17 B 216 PHE LEU THR ALA VAL GLY VAL LEU MODRES 3RJT MSE A 1 MET SELENOMETHIONINE MODRES 3RJT MSE A 10 MET SELENOMETHIONINE MODRES 3RJT CSO A 18 CYS S-HYDROXYCYSTEINE MODRES 3RJT MSE A 77 MET SELENOMETHIONINE MODRES 3RJT MSE A 87 MET SELENOMETHIONINE MODRES 3RJT MSE A 99 MET SELENOMETHIONINE MODRES 3RJT MSE A 130 MET SELENOMETHIONINE MODRES 3RJT MSE A 146 MET SELENOMETHIONINE MODRES 3RJT MSE A 157 MET SELENOMETHIONINE MODRES 3RJT MSE B 1 MET SELENOMETHIONINE MODRES 3RJT MSE B 10 MET SELENOMETHIONINE MODRES 3RJT CSO B 18 CYS S-HYDROXYCYSTEINE MODRES 3RJT MSE B 77 MET SELENOMETHIONINE MODRES 3RJT MSE B 87 MET SELENOMETHIONINE MODRES 3RJT MSE B 99 MET SELENOMETHIONINE MODRES 3RJT MSE B 130 MET SELENOMETHIONINE MODRES 3RJT MSE B 146 MET SELENOMETHIONINE MODRES 3RJT MSE B 157 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 10 8 HET CSO A 18 7 HET MSE A 77 8 HET MSE A 87 8 HET MSE A 99 8 HET MSE A 130 8 HET MSE A 146 8 HET MSE A 157 8 HET MSE B 1 8 HET MSE B 10 8 HET CSO B 18 7 HET MSE B 77 8 HET MSE B 87 8 HET MSE B 99 8 HET MSE B 130 8 HET MSE B 146 8 HET MSE B 157 8 HET ACT A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET SO4 A 305 5 HET SO4 A 306 5 HET CL A 307 1 HET ACT B 301 4 HET EDO B 302 4 HET SO4 B 303 5 HET SO4 B 304 5 HET CL B 305 1 HETNAM MSE SELENOMETHIONINE HETNAM CSO S-HYDROXYCYSTEINE HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 1 CSO 2(C3 H7 N O3 S) FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 4 EDO 4(C2 H6 O2) FORMUL 7 SO4 4(O4 S 2-) FORMUL 9 CL 2(CL 1-) FORMUL 15 HOH *549(H2 O) HELIX 1 1 ASP A 13 CSO A 18 1 6 HELIX 2 2 GLY A 35 HIS A 48 1 14 HELIX 3 3 PRO A 49 ARG A 52 5 4 HELIX 4 4 THR A 64 VAL A 76 1 13 HELIX 5 5 MSE A 77 GLN A 80 5 4 HELIX 6 6 GLY A 89 MSE A 99 1 11 HELIX 7 7 VAL A 102 HIS A 106 5 5 HELIX 8 8 GLY A 108 LYS A 124 1 17 HELIX 9 9 PRO A 125 VAL A 127 5 3 HELIX 10 10 ASP A 144 HIS A 165 1 22 HELIX 11 11 ASP A 170 ALA A 180 1 11 HELIX 12 12 ASN A 183 ALA A 188 1 6 HELIX 13 13 TYR A 195 VAL A 210 1 16 HELIX 14 14 ASP B 13 CSO B 18 1 6 HELIX 15 15 GLY B 35 HIS B 48 1 14 HELIX 16 16 PRO B 49 ARG B 52 5 4 HELIX 17 17 THR B 64 VAL B 76 1 13 HELIX 18 18 MSE B 77 GLN B 80 5 4 HELIX 19 19 GLY B 89 MSE B 99 1 11 HELIX 20 20 VAL B 102 HIS B 106 5 5 HELIX 21 21 GLY B 108 LYS B 124 1 17 HELIX 22 22 PRO B 125 VAL B 127 5 3 HELIX 23 23 ASP B 144 HIS B 165 1 22 HELIX 24 24 ASP B 170 ALA B 180 1 11 HELIX 25 25 ASN B 183 ALA B 188 1 6 HELIX 26 26 TYR B 195 VAL B 210 1 16 SHEET 1 A 6 GLY A 25 GLU A 26 0 SHEET 2 A 6 ARG A 54 ASN A 57 -1 O ASN A 57 N GLY A 25 SHEET 3 A 6 LYS A 7 GLY A 12 1 N MSE A 10 O VAL A 56 SHEET 4 A 6 TYR A 83 MSE A 87 1 O TYR A 83 N VAL A 9 SHEET 5 A 6 GLU A 129 LEU A 133 1 O LEU A 133 N LEU A 86 SHEET 6 A 6 PHE A 168 VAL A 169 1 O VAL A 169 N LEU A 132 SHEET 1 B 6 GLY B 25 GLU B 26 0 SHEET 2 B 6 ARG B 54 ASN B 57 -1 O ASN B 57 N GLY B 25 SHEET 3 B 6 LYS B 7 GLY B 12 1 N MSE B 10 O VAL B 56 SHEET 4 B 6 TYR B 83 MSE B 87 1 O TYR B 83 N VAL B 9 SHEET 5 B 6 GLU B 129 LEU B 133 1 O LEU B 133 N LEU B 86 SHEET 6 B 6 PHE B 168 VAL B 169 1 O VAL B 169 N LEU B 132 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ILE A 2 1555 1555 1.31 LINK C VAL A 9 N MSE A 10 1555 1555 1.34 LINK C MSE A 10 N VAL A 11 1555 1555 1.34 LINK C ASP A 17 N CSO A 18 1555 1555 1.32 LINK C CSO A 18 N GLY A 19 1555 1555 1.32 LINK C VAL A 76 N MSE A 77 1555 1555 1.34 LINK C MSE A 77 N ALA A 78 1555 1555 1.34 LINK C LEU A 86 N MSE A 87 1555 1555 1.34 LINK C MSE A 87 N ILE A 88 1555 1555 1.33 LINK C ASP A 98 N MSE A 99 1555 1555 1.33 LINK C MSE A 99 N PRO A 100 1555 1555 1.35 LINK C GLU A 129 N MSE A 130 1555 1555 1.32 LINK C MSE A 130 N PHE A 131 1555 1555 1.34 LINK C PRO A 145 N MSE A 146 1555 1555 1.34 LINK C MSE A 146 N ARG A 147 1555 1555 1.33 LINK C ALA A 156 N MSE A 157 1555 1555 1.35 LINK C MSE A 157 N ARG A 158 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N ILE B 2 1555 1555 1.32 LINK C VAL B 9 N MSE B 10 1555 1555 1.34 LINK C MSE B 10 N VAL B 11 1555 1555 1.33 LINK C ASP B 17 N CSO B 18 1555 1555 1.33 LINK C CSO B 18 N GLY B 19 1555 1555 1.32 LINK C VAL B 76 N MSE B 77 1555 1555 1.33 LINK C MSE B 77 N ALA B 78 1555 1555 1.33 LINK C LEU B 86 N MSE B 87 1555 1555 1.34 LINK C MSE B 87 N ILE B 88 1555 1555 1.33 LINK C ASP B 98 N MSE B 99 1555 1555 1.33 LINK C MSE B 99 N PRO B 100 1555 1555 1.35 LINK C GLU B 129 N MSE B 130 1555 1555 1.34 LINK C MSE B 130 N PHE B 131 1555 1555 1.33 LINK C PRO B 145 N MSE B 146 1555 1555 1.32 LINK C MSE B 146 N ARG B 147 1555 1555 1.33 LINK C ALA B 156 N MSE B 157 1555 1555 1.34 LINK C MSE B 157 N ARG B 158 1555 1555 1.33 CISPEP 1 HIS A 22 PRO A 23 0 3.81 CISPEP 2 HIS B 22 PRO B 23 0 -0.08 SITE 1 AC1 8 ASP A 13 SER A 14 GLY A 62 VAL A 90 SITE 2 AC1 8 ASN A 91 HIS A 193 HOH A 375 HOH A 425 SITE 1 AC2 7 ALA A 27 PRO A 100 HOH A 234 HOH A 242 SITE 2 AC2 7 HOH A 283 HOH A 543 VAL B 186 SITE 1 AC3 7 TYR A 137 ASP A 144 PRO A 145 MSE A 146 SITE 2 AC3 7 ARG A 191 HOH A 237 TRP B 185 SITE 1 AC4 5 PRO A 125 ARG A 126 HOH A 214 HOH A 377 SITE 2 AC4 5 HOH A 402 SITE 1 AC5 6 GLY A 108 ILE A 109 ASP A 110 GLU A 111 SITE 2 AC5 6 HOH A 281 HOH A 368 SITE 1 AC6 3 HIS A 48 TRP A 51 HOH A 255 SITE 1 AC7 1 ARG A 177 SITE 1 AC8 8 ASP B 13 SER B 14 GLY B 62 VAL B 90 SITE 2 AC8 8 ASN B 91 HIS B 193 HOH B 244 HOH B 385 SITE 1 AC9 7 TRP A 185 TYR B 137 ASP B 144 PRO B 145 SITE 2 AC9 7 MSE B 146 ARG B 191 HOH B 240 SITE 1 BC1 8 GLY B 108 ILE B 109 ASP B 110 GLU B 111 SITE 2 BC1 8 HOH B 258 HOH B 341 HOH B 422 HOH B 458 SITE 1 BC2 4 HIS B 48 TRP B 51 HOH B 262 HOH B 399 CRYST1 94.415 94.415 135.743 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010592 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010592 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007367 0.00000