HEADER HYDROLASE 18-APR-11 3RKK TITLE CRYSTAL STRUCTURE OF NEW DELHI METALLO-BETA-LACTAMASE-1 FROM TITLE 2 KLEBSIELLA PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE NDM-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 39-270; COMPND 5 SYNONYM: NDM-1, METALLO-BETA-LACTAMASE NDM-1; COMPND 6 EC: 3.5.2.6; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLANDM-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 51163; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, ALPHA-BETA STRUCTURE, HYDROLASE, STRUCTURES OF MTB KEYWDS 3 PROTEINS CONFERRING SUSCEPTIBILITY TO KNOWN MTB INHIBITORS, MTBI EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,C.TESAR,R.JEDRZEJCZAK,T.A.BINKOWSKI,G.BABNIGG,J.SACCHETTINI, AUTHOR 2 A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG), AUTHOR 3 STRUCTURES OF MTB PROTEINS CONFERRING SUSCEPTIBILITY TO KNOWN MTB AUTHOR 4 INHIBITORS (MTBI) REVDAT 5 28-FEB-24 3RKK 1 REMARK SEQADV REVDAT 4 20-DEC-17 3RKK 1 REMARK REVDAT 3 28-MAR-12 3RKK 1 JRNL REVDAT 2 21-SEP-11 3RKK 1 JRNL VERSN REVDAT 1 18-MAY-11 3RKK 0 JRNL AUTH Y.KIM,C.TESAR,J.MIRE,R.JEDRZEJCZAK,A.BINKOWSKI,G.BABNIGG, JRNL AUTH 2 J.SACCHETTINI,A.JOACHIMIAK JRNL TITL STRUCTURE OF APO- AND MONOMETALATED FORMS OF NDM-1 A HIGHLY JRNL TITL 2 POTENT CARBAPENEM-HYDROLYZING METALLO-BETA-LACTAMASE JRNL REF PLOS ONE V. 6 24621 2011 JRNL REFN ESSN 1932-6203 JRNL PMID 21931780 JRNL DOI 10.1371/JOURNAL.PONE.0024621 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 16745 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 842 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.6561 - 4.2689 1.00 2792 128 0.2167 0.2486 REMARK 3 2 4.2689 - 3.3889 1.00 2707 150 0.1715 0.2416 REMARK 3 3 3.3889 - 2.9606 1.00 2697 167 0.1965 0.2976 REMARK 3 4 2.9606 - 2.6900 1.00 2682 136 0.2061 0.3166 REMARK 3 5 2.6900 - 2.4972 1.00 2704 137 0.2280 0.3131 REMARK 3 6 2.4972 - 2.3500 0.86 2321 124 0.2899 0.4055 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 33.45 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.84860 REMARK 3 B22 (A**2) : -7.23630 REMARK 3 B33 (A**2) : 8.08490 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 10.88730 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 3570 REMARK 3 ANGLE : 1.615 4857 REMARK 3 CHIRALITY : 0.125 531 REMARK 3 PLANARITY : 0.011 636 REMARK 3 DIHEDRAL : 16.859 1235 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 44:118) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2790 10.9716 28.4679 REMARK 3 T TENSOR REMARK 3 T11: 0.0542 T22: 0.0117 REMARK 3 T33: -0.0524 T12: -0.0123 REMARK 3 T13: 0.0411 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 0.0350 L22: 0.0248 REMARK 3 L33: 0.1780 L12: 0.0209 REMARK 3 L13: -0.0208 L23: -0.0458 REMARK 3 S TENSOR REMARK 3 S11: 0.0115 S12: -0.0062 S13: 0.0327 REMARK 3 S21: 0.0432 S22: -0.0086 S23: 0.0100 REMARK 3 S31: -0.0305 S32: 0.0768 S33: 0.0961 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 119:215) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7136 -3.2047 24.2806 REMARK 3 T TENSOR REMARK 3 T11: 0.0747 T22: 0.0987 REMARK 3 T33: 0.0861 T12: -0.0107 REMARK 3 T13: 0.0052 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.0587 L22: 0.2537 REMARK 3 L33: 0.0230 L12: 0.0194 REMARK 3 L13: 0.0315 L23: 0.0383 REMARK 3 S TENSOR REMARK 3 S11: -0.0499 S12: 0.0865 S13: -0.0357 REMARK 3 S21: 0.0440 S22: 0.0487 S23: -0.1184 REMARK 3 S31: 0.0126 S32: 0.0573 S33: 0.0016 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 216:270) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9402 -10.1212 19.3427 REMARK 3 T TENSOR REMARK 3 T11: 0.0797 T22: 0.0495 REMARK 3 T33: 0.1096 T12: -0.0168 REMARK 3 T13: 0.0112 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 0.0228 L22: 0.1764 REMARK 3 L33: 0.1573 L12: 0.0128 REMARK 3 L13: 0.0420 L23: -0.0339 REMARK 3 S TENSOR REMARK 3 S11: -0.0536 S12: 0.0468 S13: -0.0624 REMARK 3 S21: -0.0298 S22: -0.0137 S23: -0.1611 REMARK 3 S31: -0.0105 S32: 0.0704 S33: -0.0412 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 45:57) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2428 -37.6942 5.2085 REMARK 3 T TENSOR REMARK 3 T11: 0.0868 T22: 0.0327 REMARK 3 T33: 0.1581 T12: -0.0466 REMARK 3 T13: -0.0111 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 0.0873 L22: 0.0647 REMARK 3 L33: 0.1144 L12: 0.0005 REMARK 3 L13: 0.0839 L23: -0.0469 REMARK 3 S TENSOR REMARK 3 S11: -0.0393 S12: 0.0163 S13: 0.0193 REMARK 3 S21: 0.0078 S22: -0.0398 S23: -0.0084 REMARK 3 S31: 0.0572 S32: -0.0043 S33: -0.0865 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 58:70) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2215 -33.6761 2.7654 REMARK 3 T TENSOR REMARK 3 T11: 0.0759 T22: 0.1492 REMARK 3 T33: 0.1664 T12: -0.0208 REMARK 3 T13: 0.0498 T23: -0.0417 REMARK 3 L TENSOR REMARK 3 L11: 0.0008 L22: 0.0654 REMARK 3 L33: 0.0798 L12: -0.0071 REMARK 3 L13: 0.0053 L23: -0.0569 REMARK 3 S TENSOR REMARK 3 S11: -0.0020 S12: 0.0207 S13: 0.0189 REMARK 3 S21: -0.0188 S22: -0.0399 S23: -0.0702 REMARK 3 S31: 0.0231 S32: 0.0573 S33: 0.0085 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 71:94) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8402 -30.2538 10.0262 REMARK 3 T TENSOR REMARK 3 T11: 0.0453 T22: 0.0774 REMARK 3 T33: 0.1765 T12: -0.0294 REMARK 3 T13: 0.0080 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.2742 L22: 0.0128 REMARK 3 L33: 0.0038 L12: 0.0039 REMARK 3 L13: 0.0053 L23: -0.0080 REMARK 3 S TENSOR REMARK 3 S11: -0.0086 S12: 0.0082 S13: -0.0580 REMARK 3 S21: -0.0146 S22: 0.0557 S23: -0.0687 REMARK 3 S31: 0.0077 S32: 0.0196 S33: 0.0327 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 95:137) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9999 -34.0129 14.7987 REMARK 3 T TENSOR REMARK 3 T11: 0.0287 T22: 0.0436 REMARK 3 T33: 0.1303 T12: 0.0088 REMARK 3 T13: 0.0455 T23: 0.0305 REMARK 3 L TENSOR REMARK 3 L11: 0.1180 L22: 0.0691 REMARK 3 L33: 0.0805 L12: 0.0866 REMARK 3 L13: 0.0183 L23: 0.0375 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: -0.0078 S13: -0.0414 REMARK 3 S21: -0.0029 S22: 0.0416 S23: -0.0298 REMARK 3 S31: 0.0160 S32: -0.0096 S33: 0.1446 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 138:166) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5566 -20.8284 20.2463 REMARK 3 T TENSOR REMARK 3 T11: 0.0204 T22: 0.0514 REMARK 3 T33: 0.0926 T12: 0.0008 REMARK 3 T13: 0.0567 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 0.0535 L22: 0.0190 REMARK 3 L33: 0.0591 L12: 0.0232 REMARK 3 L13: -0.0467 L23: -0.0118 REMARK 3 S TENSOR REMARK 3 S11: -0.0202 S12: 0.0134 S13: -0.0238 REMARK 3 S21: 0.0201 S22: 0.0003 S23: 0.0433 REMARK 3 S31: -0.0030 S32: -0.0362 S33: -0.0633 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 167:194) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8143 -15.0570 15.3657 REMARK 3 T TENSOR REMARK 3 T11: 0.1108 T22: 0.1303 REMARK 3 T33: 0.1176 T12: 0.0329 REMARK 3 T13: -0.0825 T23: -0.0881 REMARK 3 L TENSOR REMARK 3 L11: 0.0121 L22: 0.0383 REMARK 3 L33: 0.1012 L12: 0.0108 REMARK 3 L13: -0.0324 L23: -0.0507 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: 0.0126 S13: 0.0100 REMARK 3 S21: -0.0414 S22: 0.0204 S23: 0.0169 REMARK 3 S31: 0.0297 S32: -0.0453 S33: 0.1027 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 195:215) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8664 -19.0238 2.4605 REMARK 3 T TENSOR REMARK 3 T11: 0.1986 T22: 0.0788 REMARK 3 T33: 0.1324 T12: -0.0751 REMARK 3 T13: 0.0638 T23: -0.0376 REMARK 3 L TENSOR REMARK 3 L11: 0.0180 L22: 0.0480 REMARK 3 L33: 0.0137 L12: 0.0043 REMARK 3 L13: 0.0092 L23: 0.0223 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: 0.0136 S13: -0.0249 REMARK 3 S21: -0.0109 S22: 0.0147 S23: -0.0654 REMARK 3 S31: 0.0217 S32: 0.0050 S33: -0.0082 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 216:239) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6160 -11.7327 2.9030 REMARK 3 T TENSOR REMARK 3 T11: 0.1322 T22: 0.1012 REMARK 3 T33: 0.1239 T12: -0.0521 REMARK 3 T13: -0.0079 T23: -0.0665 REMARK 3 L TENSOR REMARK 3 L11: 0.0007 L22: 0.1106 REMARK 3 L33: 0.0543 L12: -0.0079 REMARK 3 L13: -0.0062 L23: 0.0490 REMARK 3 S TENSOR REMARK 3 S11: 0.0035 S12: -0.0116 S13: 0.0015 REMARK 3 S21: 0.0335 S22: -0.0101 S23: 0.0424 REMARK 3 S31: 0.0215 S32: -0.0069 S33: 0.0246 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 240:255) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2447 -19.9121 -0.1922 REMARK 3 T TENSOR REMARK 3 T11: 0.1225 T22: 0.1015 REMARK 3 T33: 0.0960 T12: -0.0236 REMARK 3 T13: -0.0319 T23: 0.0435 REMARK 3 L TENSOR REMARK 3 L11: 0.0861 L22: 0.1306 REMARK 3 L33: 0.1340 L12: 0.0044 REMARK 3 L13: -0.0645 L23: 0.1018 REMARK 3 S TENSOR REMARK 3 S11: 0.0538 S12: -0.0307 S13: -0.0631 REMARK 3 S21: -0.0027 S22: 0.0640 S23: 0.1040 REMARK 3 S31: -0.0110 S32: -0.0525 S33: 0.0839 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 256:270) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2971 -9.9610 -4.1177 REMARK 3 T TENSOR REMARK 3 T11: 0.1025 T22: 0.1187 REMARK 3 T33: 0.1559 T12: 0.0347 REMARK 3 T13: 0.0336 T23: 0.0320 REMARK 3 L TENSOR REMARK 3 L11: 0.1304 L22: 0.1191 REMARK 3 L33: 0.0595 L12: 0.0390 REMARK 3 L13: 0.0712 L23: 0.0445 REMARK 3 S TENSOR REMARK 3 S11: 0.0168 S12: 0.0438 S13: 0.0074 REMARK 3 S21: 0.0321 S22: 0.0135 S23: -0.0031 REMARK 3 S31: -0.0175 S32: -0.0191 S33: -0.0052 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RKK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000065046. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16892 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.14400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.44800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M AMMONIUM SULFATE 25.5 % (W/V) REMARK 280 PEG 4000, 15 % (V/V) GLYCEROL, 5 MM ZINC ACETATE, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.43100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 34 REMARK 465 ASN A 35 REMARK 465 ALA A 36 REMARK 465 ASN A 37 REMARK 465 TYR A 38 REMARK 465 MET A 39 REMARK 465 GLU A 40 REMARK 465 THR A 41 REMARK 465 GLY A 42 REMARK 465 ASP A 43 REMARK 465 SER B 34 REMARK 465 ASN B 35 REMARK 465 ALA B 36 REMARK 465 ASN B 37 REMARK 465 TYR B 38 REMARK 465 MET B 39 REMARK 465 GLU B 40 REMARK 465 THR B 41 REMARK 465 GLY B 42 REMARK 465 ASP B 43 REMARK 465 GLN B 44 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 249 OXT ACY B 287 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 166 CB - CA - C ANGL. DEV. = -14.8 DEGREES REMARK 500 PRO B 187 C - N - CD ANGL. DEV. = -16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 45 81.74 -158.31 REMARK 500 ARG A 45 -71.71 -133.28 REMARK 500 PHE A 46 -2.55 59.81 REMARK 500 PHE A 46 16.31 -140.29 REMARK 500 ASP A 90 167.04 79.39 REMARK 500 PHE B 46 0.43 59.48 REMARK 500 PHE B 46 12.90 -141.47 REMARK 500 ASP B 90 156.77 84.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 282 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 283 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 284 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 285 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 286 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 271 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 282 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 283 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 285 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 286 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 287 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RKJ RELATED DB: PDB REMARK 900 THE SAME PROTEIN AND THE CRYSTAL FROM DIFFERENT CONDITION. REMARK 900 RELATED ID: APC105101 RELATED DB: TARGETDB DBREF 3RKK A 39 270 UNP C7C422 BLAN1_KLEPN 39 270 DBREF 3RKK B 39 270 UNP C7C422 BLAN1_KLEPN 39 270 SEQADV 3RKK SER A 34 UNP C7C422 EXPRESSION TAG SEQADV 3RKK ASN A 35 UNP C7C422 EXPRESSION TAG SEQADV 3RKK ALA A 36 UNP C7C422 EXPRESSION TAG SEQADV 3RKK ASN A 37 UNP C7C422 EXPRESSION TAG SEQADV 3RKK TYR A 38 UNP C7C422 EXPRESSION TAG SEQADV 3RKK SER B 34 UNP C7C422 EXPRESSION TAG SEQADV 3RKK ASN B 35 UNP C7C422 EXPRESSION TAG SEQADV 3RKK ALA B 36 UNP C7C422 EXPRESSION TAG SEQADV 3RKK ASN B 37 UNP C7C422 EXPRESSION TAG SEQADV 3RKK TYR B 38 UNP C7C422 EXPRESSION TAG SEQRES 1 A 237 SER ASN ALA ASN TYR MET GLU THR GLY ASP GLN ARG PHE SEQRES 2 A 237 GLY ASP LEU VAL PHE ARG GLN LEU ALA PRO ASN VAL TRP SEQRES 3 A 237 GLN HIS THR SER TYR LEU ASP MET PRO GLY PHE GLY ALA SEQRES 4 A 237 VAL ALA SER ASN GLY LEU ILE VAL ARG ASP GLY GLY ARG SEQRES 5 A 237 VAL LEU VAL VAL ASP THR ALA TRP THR ASP ASP GLN THR SEQRES 6 A 237 ALA GLN ILE LEU ASN TRP ILE LYS GLN GLU ILE ASN LEU SEQRES 7 A 237 PRO VAL ALA LEU ALA VAL VAL THR HIS ALA HIS GLN ASP SEQRES 8 A 237 LYS MET GLY GLY MET ASP ALA LEU HIS ALA ALA GLY ILE SEQRES 9 A 237 ALA THR TYR ALA ASN ALA LEU SER ASN GLN LEU ALA PRO SEQRES 10 A 237 GLN GLU GLY MET VAL ALA ALA GLN HIS SER LEU THR PHE SEQRES 11 A 237 ALA ALA ASN GLY TRP VAL GLU PRO ALA THR ALA PRO ASN SEQRES 12 A 237 PHE GLY PRO LEU LYS VAL PHE TYR PRO GLY PRO GLY HIS SEQRES 13 A 237 THR SER ASP ASN ILE THR VAL GLY ILE ASP GLY THR ASP SEQRES 14 A 237 ILE ALA PHE GLY GLY CYS LEU ILE LYS ASP SER LYS ALA SEQRES 15 A 237 LYS SER LEU GLY ASN LEU GLY ASP ALA ASP THR GLU HIS SEQRES 16 A 237 TYR ALA ALA SER ALA ARG ALA PHE GLY ALA ALA PHE PRO SEQRES 17 A 237 LYS ALA SER MET ILE VAL MET SER HIS SER ALA PRO ASP SEQRES 18 A 237 SER ARG ALA ALA ILE THR HIS THR ALA ARG MET ALA ASP SEQRES 19 A 237 LYS LEU ARG SEQRES 1 B 237 SER ASN ALA ASN TYR MET GLU THR GLY ASP GLN ARG PHE SEQRES 2 B 237 GLY ASP LEU VAL PHE ARG GLN LEU ALA PRO ASN VAL TRP SEQRES 3 B 237 GLN HIS THR SER TYR LEU ASP MET PRO GLY PHE GLY ALA SEQRES 4 B 237 VAL ALA SER ASN GLY LEU ILE VAL ARG ASP GLY GLY ARG SEQRES 5 B 237 VAL LEU VAL VAL ASP THR ALA TRP THR ASP ASP GLN THR SEQRES 6 B 237 ALA GLN ILE LEU ASN TRP ILE LYS GLN GLU ILE ASN LEU SEQRES 7 B 237 PRO VAL ALA LEU ALA VAL VAL THR HIS ALA HIS GLN ASP SEQRES 8 B 237 LYS MET GLY GLY MET ASP ALA LEU HIS ALA ALA GLY ILE SEQRES 9 B 237 ALA THR TYR ALA ASN ALA LEU SER ASN GLN LEU ALA PRO SEQRES 10 B 237 GLN GLU GLY MET VAL ALA ALA GLN HIS SER LEU THR PHE SEQRES 11 B 237 ALA ALA ASN GLY TRP VAL GLU PRO ALA THR ALA PRO ASN SEQRES 12 B 237 PHE GLY PRO LEU LYS VAL PHE TYR PRO GLY PRO GLY HIS SEQRES 13 B 237 THR SER ASP ASN ILE THR VAL GLY ILE ASP GLY THR ASP SEQRES 14 B 237 ILE ALA PHE GLY GLY CYS LEU ILE LYS ASP SER LYS ALA SEQRES 15 B 237 LYS SER LEU GLY ASN LEU GLY ASP ALA ASP THR GLU HIS SEQRES 16 B 237 TYR ALA ALA SER ALA ARG ALA PHE GLY ALA ALA PHE PRO SEQRES 17 B 237 LYS ALA SER MET ILE VAL MET SER HIS SER ALA PRO ASP SEQRES 18 B 237 SER ARG ALA ALA ILE THR HIS THR ALA ARG MET ALA ASP SEQRES 19 B 237 LYS LEU ARG HET SO4 A 281 5 HET SO4 A 282 5 HET SO4 A 283 5 HET GOL A 284 6 HET GOL A 285 6 HET GOL A 286 6 HET GOL A 271 6 HET SO4 B 281 5 HET SO4 B 282 5 HET SO4 B 283 5 HET GOL B 285 6 HET GOL B 286 6 HET ACY B 287 4 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM ACY ACETIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 6(O4 S 2-) FORMUL 6 GOL 6(C3 H8 O3) FORMUL 15 ACY C2 H4 O2 FORMUL 16 HOH *170(H2 O) HELIX 1 1 THR A 94 ILE A 109 1 16 HELIX 2 2 HIS A 122 GLY A 127 1 6 HELIX 3 3 GLY A 128 GLY A 136 1 9 HELIX 4 4 ALA A 143 ALA A 149 1 7 HELIX 5 5 PRO A 150 GLY A 153 5 4 HELIX 6 6 ASN A 220 ALA A 224 5 5 HELIX 7 7 HIS A 228 PHE A 240 1 13 HELIX 8 8 ARG A 256 LYS A 268 1 13 HELIX 9 9 THR B 94 ILE B 109 1 16 HELIX 10 10 HIS B 122 GLY B 127 1 6 HELIX 11 11 GLY B 128 ALA B 135 1 8 HELIX 12 12 ALA B 143 ALA B 149 1 7 HELIX 13 13 PRO B 150 GLU B 152 5 3 HELIX 14 14 HIS B 228 PHE B 240 1 13 HELIX 15 15 ARG B 256 LYS B 268 1 13 SHEET 1 A 7 VAL A 50 ALA A 55 0 SHEET 2 A 7 VAL A 58 TYR A 64 -1 O VAL A 58 N LEU A 54 SHEET 3 A 7 ALA A 74 ARG A 81 -1 O ILE A 79 N TRP A 59 SHEET 4 A 7 VAL A 86 VAL A 89 -1 O VAL A 89 N LEU A 78 SHEET 5 A 7 VAL A 113 VAL A 118 1 O VAL A 117 N VAL A 88 SHEET 6 A 7 ALA A 138 ASN A 142 1 O TYR A 140 N VAL A 118 SHEET 7 A 7 HIS A 159 LEU A 161 1 O LEU A 161 N ALA A 141 SHEET 1 B 4 LEU A 180 PHE A 183 0 SHEET 2 B 4 THR A 195 ILE A 198 -1 O GLY A 197 N LYS A 181 SHEET 3 B 4 ILE A 203 PHE A 205 -1 O PHE A 205 N VAL A 196 SHEET 4 B 4 MET A 245 VAL A 247 1 O MET A 245 N ALA A 204 SHEET 1 C 7 VAL B 50 ALA B 55 0 SHEET 2 C 7 VAL B 58 MET B 67 -1 O THR B 62 N VAL B 50 SHEET 3 C 7 GLY B 71 ASP B 82 -1 O ILE B 79 N TRP B 59 SHEET 4 C 7 ARG B 85 VAL B 89 -1 O VAL B 89 N LEU B 78 SHEET 5 C 7 VAL B 113 VAL B 118 1 O ALA B 114 N VAL B 86 SHEET 6 C 7 ALA B 138 ASN B 142 1 O TYR B 140 N ALA B 116 SHEET 7 C 7 HIS B 159 LEU B 161 1 O LEU B 161 N ALA B 141 SHEET 1 D 4 LEU B 180 PHE B 183 0 SHEET 2 D 4 THR B 195 ILE B 198 -1 O GLY B 197 N LYS B 181 SHEET 3 D 4 ILE B 203 GLY B 207 -1 O PHE B 205 N VAL B 196 SHEET 4 D 4 MET B 245 MET B 248 1 O MET B 245 N ALA B 204 SITE 1 AC1 7 HIS A 189 LYS A 211 LEU A 218 GLY A 219 SITE 2 AC1 7 ASN A 220 HIS A 250 HOH A 329 SITE 1 AC2 6 LYS A 211 ASP A 212 MET A 248 HIS A 250 SITE 2 AC2 6 SER A 251 HOH A 272 SITE 1 AC3 3 ARG A 234 ARG A 264 HOH A 326 SITE 1 AC4 3 HOH A 1 GLN A 44 GOL A 285 SITE 1 AC5 2 HOH A 1 GOL A 284 SITE 1 AC6 3 GLN A 53 ALA A 55 PRO A 56 SITE 1 AC7 6 ALA A 55 PRO A 56 ASN A 57 GLY A 200 SITE 2 AC7 6 THR A 201 HOH A 300 SITE 1 AC8 5 THR A 94 GLY A 127 ASP B 95 GLY B 127 SITE 2 AC8 5 HOH B 346 SITE 1 AC9 4 ASP B 212 MET B 248 HIS B 250 SER B 251 SITE 1 BC1 3 ARG B 234 ARG B 264 HOH B 295 SITE 1 BC2 3 GLN B 53 ALA B 55 PRO B 56 SITE 1 BC3 2 HOH B 303 HOH B 304 SITE 1 BC4 5 HIS B 120 ASP B 124 CYS B 208 SER B 249 SITE 2 BC4 5 HIS B 250 CRYST1 59.760 50.862 70.717 90.00 106.98 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016734 0.000000 0.005110 0.00000 SCALE2 0.000000 0.019661 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014786 0.00000