HEADER HYDROLASE/HYDROLASE INHIBITOR 20-APR-11 3RLW TITLE HUMAN THROMBIN IN COMPLEX WITH MI328 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBIN LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 EC: 3.4.21.5; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: THROMBIN HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 EC: 3.4.21.5; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HIRUDIN VARIANT-2; COMPND 11 CHAIN: I; COMPND 12 FRAGMENT: RESIDUES IN UNP 60-72; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HIRUDO MEDICINALIS; SOURCE 12 ORGANISM_COMMON: MEDICINAL LEECH; SOURCE 13 ORGANISM_TAXID: 6421; SOURCE 14 OTHER_DETAILS: SYNTHETIC FRAGMENT OF HIRUDIN FROM HIRUDO MEDICINALIS KEYWDS SERINE PROTEASE, KRINGLE, HYDROLASE, BLOOD COAGULATION, BLOOD KEYWDS 2 CLOTTING, CONVERTION OF FIBRINOGEN TO FIBRIN, CLEAVAGE ON PAIRS OF KEYWDS 3 BASIC RESIDUES, HIRUDIN, GLYCOSYLATION, BLOOD, HYDROLASE-HYDROLASE KEYWDS 4 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.BIELA,A.HEINE,G.KLEBE REVDAT 5 06-DEC-23 3RLW 1 REMARK REVDAT 4 01-NOV-23 3RLW 1 HETSYN REVDAT 3 29-JUL-20 3RLW 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 13-JUL-16 3RLW 1 JRNL REVDAT 1 25-APR-12 3RLW 0 JRNL AUTH A.BIELA,F.SIELAFF,F.TERWESTEN,A.HEINE,T.STEINMETZER,G.KLEBE JRNL TITL LIGAND BINDING STEPWISE DISRUPTS WATER NETWORK IN THROMBIN: JRNL TITL 2 ENTHALPIC AND ENTROPIC CHANGES REVEAL CLASSICAL HYDROPHOBIC JRNL TITL 3 EFFECT JRNL REF J.MED.CHEM. V. 55 6094 2012 JRNL REFN ISSN 0022-2623 JRNL PMID 22612268 JRNL DOI 10.1021/JM300337Q REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 3 NUMBER OF REFLECTIONS : 36443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1826 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.6557 - 3.6397 0.92 3566 158 0.1496 0.1696 REMARK 3 2 3.6397 - 2.8894 0.96 3602 208 0.1577 0.1705 REMARK 3 3 2.8894 - 2.5243 0.96 3599 181 0.1780 0.2276 REMARK 3 4 2.5243 - 2.2936 0.96 3590 183 0.1626 0.2050 REMARK 3 5 2.2936 - 2.1292 0.95 3593 176 0.1553 0.1796 REMARK 3 6 2.1292 - 2.0037 0.96 3563 199 0.1568 0.1820 REMARK 3 7 2.0037 - 1.9033 0.93 3477 205 0.1649 0.2104 REMARK 3 8 1.9033 - 1.8205 0.88 3296 168 0.1725 0.2011 REMARK 3 9 1.8205 - 1.7504 0.87 3247 171 0.1852 0.2148 REMARK 3 10 1.7504 - 1.6900 0.83 3084 177 0.2242 0.2921 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 45.28 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.04400 REMARK 3 B22 (A**2) : -1.60850 REMARK 3 B33 (A**2) : -0.43550 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.83310 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2552 REMARK 3 ANGLE : 1.060 3461 REMARK 3 CHIRALITY : 0.074 355 REMARK 3 PLANARITY : 0.005 439 REMARK 3 DIHEDRAL : 17.928 1017 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN H AND RESID 16:119) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3795 -0.8397 11.6509 REMARK 3 T TENSOR REMARK 3 T11: 0.1298 T22: 0.1545 REMARK 3 T33: 0.0729 T12: 0.0780 REMARK 3 T13: 0.0009 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 1.4192 L22: 0.9647 REMARK 3 L33: 0.7542 L12: -0.8661 REMARK 3 L13: 0.3808 L23: -0.1131 REMARK 3 S TENSOR REMARK 3 S11: 0.2770 S12: 0.3354 S13: -0.0368 REMARK 3 S21: -0.2169 S22: -0.2490 S23: -0.0479 REMARK 3 S31: 0.1012 S32: 0.1490 S33: -0.0099 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN H AND RESID 120:138) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0036 6.5784 30.9666 REMARK 3 T TENSOR REMARK 3 T11: 0.1351 T22: 0.1401 REMARK 3 T33: 0.1045 T12: 0.0231 REMARK 3 T13: -0.0145 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.6923 L22: 0.6473 REMARK 3 L33: 0.2401 L12: -0.3739 REMARK 3 L13: -0.3649 L23: 0.3409 REMARK 3 S TENSOR REMARK 3 S11: -0.0172 S12: -0.1546 S13: 0.1071 REMARK 3 S21: 0.1265 S22: 0.0898 S23: -0.0061 REMARK 3 S31: -0.0343 S32: 0.1035 S33: -0.0398 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN H AND RESID 139:156) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8666 -9.9711 14.4145 REMARK 3 T TENSOR REMARK 3 T11: 0.1790 T22: 0.1217 REMARK 3 T33: 0.2216 T12: 0.0266 REMARK 3 T13: -0.0907 T23: -0.0694 REMARK 3 L TENSOR REMARK 3 L11: 1.8450 L22: 0.2934 REMARK 3 L33: 1.3137 L12: -0.5934 REMARK 3 L13: 0.9178 L23: -0.0329 REMARK 3 S TENSOR REMARK 3 S11: 0.2238 S12: 0.2182 S13: -0.6125 REMARK 3 S21: -0.3710 S22: 0.1331 S23: 0.3254 REMARK 3 S31: 0.1628 S32: -0.0570 S33: -0.2675 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN H AND RESID 157:184A) REMARK 3 ORIGIN FOR THE GROUP (A): 13.264 -2.970 26.837 REMARK 3 T TENSOR REMARK 3 T11: 0.1480 T22: 0.1116 REMARK 3 T33: 0.1329 T12: 0.0193 REMARK 3 T13: 0.0034 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 0.3077 L22: 0.7215 REMARK 3 L33: 0.3514 L12: -0.4553 REMARK 3 L13: -0.1280 L23: 0.0543 REMARK 3 S TENSOR REMARK 3 S11: -0.0933 S12: -0.1503 S13: -0.1021 REMARK 3 S21: 0.1974 S22: 0.0965 S23: 0.0819 REMARK 3 S31: 0.0498 S32: 0.0301 S33: -0.0028 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN H AND RESID 185:186D) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3091 -11.6415 35.9165 REMARK 3 T TENSOR REMARK 3 T11: 0.2913 T22: 0.3154 REMARK 3 T33: 0.4924 T12: 0.0100 REMARK 3 T13: 0.1057 T23: 0.2140 REMARK 3 L TENSOR REMARK 3 L11: 1.6199 L22: 2.5340 REMARK 3 L33: 1.2524 L12: 1.4773 REMARK 3 L13: -0.9551 L23: -0.4359 REMARK 3 S TENSOR REMARK 3 S11: -0.5534 S12: 0.1024 S13: 0.0649 REMARK 3 S21: 0.0614 S22: 0.2046 S23: 0.2804 REMARK 3 S31: 0.3270 S32: -0.1363 S33: 0.1454 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN H AND RESID 187:235) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1550 -2.2135 26.4095 REMARK 3 T TENSOR REMARK 3 T11: 0.0924 T22: 0.0703 REMARK 3 T33: 0.0879 T12: 0.0164 REMARK 3 T13: 0.0052 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.3447 L22: 0.4798 REMARK 3 L33: 0.7145 L12: -0.7235 REMARK 3 L13: 0.0958 L23: -0.1599 REMARK 3 S TENSOR REMARK 3 S11: 0.0254 S12: -0.0659 S13: -0.1937 REMARK 3 S21: -0.0096 S22: 0.0191 S23: 0.0930 REMARK 3 S31: 0.1247 S32: 0.0304 S33: -0.0012 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN H AND RESID 236:246) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3100 9.9877 20.0155 REMARK 3 T TENSOR REMARK 3 T11: 0.2109 T22: 0.2179 REMARK 3 T33: 0.3544 T12: -0.0384 REMARK 3 T13: 0.0446 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 0.3928 L22: 2.7555 REMARK 3 L33: 2.5379 L12: 0.7834 REMARK 3 L13: 0.1980 L23: -1.2622 REMARK 3 S TENSOR REMARK 3 S11: 0.2360 S12: 0.0519 S13: 0.2670 REMARK 3 S21: 0.1824 S22: -0.0631 S23: -0.5797 REMARK 3 S31: -0.3674 S32: 0.4828 S33: -0.1374 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN I AND RESID 55:65) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9321 -1.7131 -3.5692 REMARK 3 T TENSOR REMARK 3 T11: 0.5371 T22: 0.6233 REMARK 3 T33: 0.1503 T12: 0.2355 REMARK 3 T13: 0.0219 T23: -0.0899 REMARK 3 L TENSOR REMARK 3 L11: 1.6623 L22: 1.0991 REMARK 3 L33: 0.2396 L12: -0.4299 REMARK 3 L13: -0.1719 L23: -0.3676 REMARK 3 S TENSOR REMARK 3 S11: 0.3998 S12: 1.1240 S13: -0.1610 REMARK 3 S21: -0.9792 S22: -0.2644 S23: -0.1320 REMARK 3 S31: 0.1894 S32: -0.0652 S33: -0.1351 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN L AND RESID 1C:3) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8071 16.7786 19.7360 REMARK 3 T TENSOR REMARK 3 T11: 0.1741 T22: 0.1111 REMARK 3 T33: 0.2309 T12: 0.0079 REMARK 3 T13: 0.0090 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.7341 L22: 1.9183 REMARK 3 L33: 3.0154 L12: -1.1724 REMARK 3 L13: 0.1315 L23: -0.5789 REMARK 3 S TENSOR REMARK 3 S11: -0.0998 S12: 0.1280 S13: 0.2767 REMARK 3 S21: -0.1088 S22: -0.0684 S23: -0.8849 REMARK 3 S31: -0.5249 S32: -0.0626 S33: 0.1090 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN L AND RESID 4:13) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4925 14.1068 18.2566 REMARK 3 T TENSOR REMARK 3 T11: 0.1289 T22: 0.1288 REMARK 3 T33: 0.1093 T12: 0.0706 REMARK 3 T13: 0.0214 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.4153 L22: 0.3048 REMARK 3 L33: 0.1169 L12: -0.1221 REMARK 3 L13: -0.0507 L23: 0.1072 REMARK 3 S TENSOR REMARK 3 S11: 0.0600 S12: -0.1454 S13: 0.1285 REMARK 3 S21: -0.0921 S22: -0.1089 S23: 0.0989 REMARK 3 S31: -0.0018 S32: -0.1484 S33: 0.0522 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN L AND RESID 14:14K) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1881 5.1829 30.1081 REMARK 3 T TENSOR REMARK 3 T11: 0.1200 T22: 0.1529 REMARK 3 T33: 0.1582 T12: 0.0355 REMARK 3 T13: 0.0342 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.1292 L22: 0.5278 REMARK 3 L33: 2.1149 L12: -0.0679 REMARK 3 L13: -0.3732 L23: -0.3122 REMARK 3 S TENSOR REMARK 3 S11: 0.0515 S12: -0.1288 S13: -0.0807 REMARK 3 S21: 0.1052 S22: 0.1755 S23: 0.1990 REMARK 3 S31: -0.0208 S32: -0.4431 S33: -0.1626 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RLW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000065093. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR REMARK 200 OPTICS : COLLIMATING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38822 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49000 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H8D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 8000, 20MM SODIUM PHOSPHATE, REMARK 280 175MM SODIUM CHLORIDE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.25000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.25000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H1173 LIES ON A SPECIAL POSITION. REMARK 375 HOH H1194 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR L 1H REMARK 465 PHE L 1G REMARK 465 GLY L 1F REMARK 465 SER L 1E REMARK 465 GLY L 1D REMARK 465 ASP L 14L REMARK 465 GLY L 14M REMARK 465 ARG L 15 REMARK 465 TRP H 148 REMARK 465 THR H 149 REMARK 465 ALA H 149A REMARK 465 ASN H 149B REMARK 465 VAL H 149C REMARK 465 GLY H 149D REMARK 465 LYS H 149E REMARK 465 GLU H 247 REMARK 465 ASN I 53 REMARK 465 GLY I 54 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU L 1C CG CD OE1 OE2 REMARK 470 SER H 36A OG REMARK 470 LYS H 236 CG CD CE NZ REMARK 470 GLN I 65 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE L 7 -89.70 -129.66 REMARK 500 ALA H 44 -178.76 -170.82 REMARK 500 TYR H 60A 83.45 -154.26 REMARK 500 ASN H 60G 79.49 -154.91 REMARK 500 HIS H 71 -61.87 -131.38 REMARK 500 ILE H 79 -62.99 -127.66 REMARK 500 SER H 195 135.97 -38.90 REMARK 500 SER H 214 -65.48 -120.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE THROMBIN INHIBITOR REMARK 630 MOLECULE NAME: N-(BENZYLSULFONYL)GLYCYL-N-(4-CARBAMIMIDOYLBENZYL)- REMARK 630 L-PROLINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 S28 H 1 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: PMS GLY PRO 00S REMARK 630 DETAILS: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3F68 RELATED DB: PDB REMARK 900 RELATED ID: 1K22 RELATED DB: PDB REMARK 900 RELATED ID: 1K1O RELATED DB: PDB REMARK 900 RELATED ID: 2ZQ1 RELATED DB: PDB REMARK 900 RELATED ID: 3P17 RELATED DB: PDB REMARK 900 RELATED ID: 3QTO RELATED DB: PDB REMARK 900 RELATED ID: 3RLY RELATED DB: PDB REMARK 900 RELATED ID: 3RM0 RELATED DB: PDB REMARK 900 RELATED ID: 3RM2 RELATED DB: PDB REMARK 900 RELATED ID: 3RML RELATED DB: PDB REMARK 900 RELATED ID: 3RMM RELATED DB: PDB REMARK 900 RELATED ID: 3RMN RELATED DB: PDB REMARK 900 RELATED ID: 3RMO RELATED DB: PDB DBREF 3RLW L 1H 15 UNP P00734 THRB_HUMAN 328 363 DBREF 3RLW H 16 247 UNP P00734 THRB_HUMAN 364 622 DBREF 3RLW I 53 65 UNP P09945 HIRV2_HIRME 60 72 SEQRES 1 L 36 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO SEQRES 2 L 36 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG SEQRES 3 L 36 GLU LEU LEU GLU SER TYR ILE ASP GLY ARG SEQRES 1 H 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 H 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 H 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 H 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 H 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 H 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 H 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 H 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 H 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 H 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 H 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 H 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 H 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 H 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 H 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 H 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 H 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 H 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 H 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 H 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 I 13 ASN GLY ASP PHE GLU GLU ILE PRO GLU GLU TYS LEU GLN MODRES 3RLW ASN H 60G ASN GLYCOSYLATION SITE MODRES 3RLW TYS I 63 TYR O-SULFO-L-TYROSINE HET TYS I 63 16 HET NAG H 260G 14 HET S28 H 1 32 HET PO4 H 2 5 HET GOL H 3 6 HET GOL H 4 6 HET GOL H 5 6 HET NA H 6 1 HET NA H 7 1 HETNAM TYS O-SULFO-L-TYROSINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM S28 N-(BENZYLSULFONYL)GLYCYL-N-(4-CARBAMIMIDOYLBENZYL)-L- HETNAM 2 S28 PROLINAMIDE HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 TYS C9 H11 N O6 S FORMUL 4 NAG C8 H15 N O6 FORMUL 5 S28 C22 H27 N5 O4 S FORMUL 6 PO4 O4 P 3- FORMUL 7 GOL 3(C3 H8 O3) FORMUL 10 NA 2(NA 1+) FORMUL 12 HOH *241(H2 O) HELIX 1 1 PHE L 7 SER L 11 5 5 HELIX 2 2 THR L 14B TYR L 14J 1 9 HELIX 3 3 ALA H 55 CYS H 58 5 4 HELIX 4 4 PRO H 60B ASP H 60E 5 4 HELIX 5 5 THR H 60I ASN H 62 5 3 HELIX 6 6 ASP H 125 LEU H 130 1 9 HELIX 7 7 GLU H 164 SER H 171 1 8 HELIX 8 8 LYS H 185 GLY H 186C 5 5 HELIX 9 9 LEU H 234 GLY H 246 1 13 HELIX 10 10 PRO I 60 GLN I 65 5 6 SHEET 1 A 7 SER H 20 ASP H 21 0 SHEET 2 A 7 GLN H 156 PRO H 161 -1 O VAL H 157 N SER H 20 SHEET 3 A 7 LYS H 135 GLY H 140 -1 N VAL H 138 O VAL H 158 SHEET 4 A 7 PRO H 198 LYS H 202 -1 O VAL H 200 N ARG H 137 SHEET 5 A 7 TRP H 207 TRP H 215 -1 O TYR H 208 N MET H 201 SHEET 6 A 7 GLY H 226 HIS H 230 -1 O PHE H 227 N TRP H 215 SHEET 7 A 7 MET H 180 ALA H 183 -1 N PHE H 181 O TYR H 228 SHEET 1 B 7 GLN H 30 ARG H 35 0 SHEET 2 B 7 GLU H 39 LEU H 46 -1 O LEU H 41 N LEU H 33 SHEET 3 B 7 TRP H 51 THR H 54 -1 O LEU H 53 N SER H 45 SHEET 4 B 7 ALA H 104 LEU H 108 -1 O ALA H 104 N THR H 54 SHEET 5 B 7 LYS H 81 ILE H 90 -1 N GLU H 86 O LYS H 107 SHEET 6 B 7 LEU H 64 ILE H 68 -1 N VAL H 66 O SER H 83 SHEET 7 B 7 GLN H 30 ARG H 35 -1 N PHE H 34 O LEU H 65 SHEET 1 C 2 LEU H 60 TYR H 60A 0 SHEET 2 C 2 LYS H 60F ASN H 60G-1 O LYS H 60F N TYR H 60A SSBOND 1 CYS L 1 CYS H 122 1555 1555 2.06 SSBOND 2 CYS H 42 CYS H 58 1555 1555 2.05 SSBOND 3 CYS H 168 CYS H 182 1555 1555 2.03 SSBOND 4 CYS H 191 CYS H 220 1555 1555 2.05 LINK ND2 ASN H 60G C1 NAG H 260G 1555 1555 1.43 LINK C GLU I 62 N TYS I 63 1555 1555 1.33 LINK C TYS I 63 N LEU I 64 1555 1555 1.33 CISPEP 1 SER H 36A PRO H 37 0 -2.15 CRYST1 70.500 71.300 72.500 90.00 100.60 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014184 0.000000 0.002655 0.00000 SCALE2 0.000000 0.014025 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014033 0.00000