data_3RMP # _entry.id 3RMP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3RMP pdb_00003rmp 10.2210/pdb3rmp/pdb NDB NA1091 ? ? RCSB RCSB065121 ? ? WWPDB D_1000065121 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3JTZ _pdbx_database_related.details 'The same protein without nucleotide' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3RMP _pdbx_database_status.recvd_initial_deposition_date 2011-04-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Szwagierczak, A.' 1 'Popowicz, G.M.' 2 'Holak, T.A.' 3 'Rakin, A.' 4 'Antonenka, U.' 5 # _citation.id primary _citation.title 'Structural basis for the recognition of attP substrates by P4-like integrases' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Szwagierczak, A.' 1 ? primary 'Popowicz, G.M.' 2 ? primary 'Holak, T.A.' 3 ? primary 'Rakin, A.' 4 ? primary 'Antonenka, U.' 5 ? # _cell.entry_id 3RMP _cell.length_a 60.900 _cell.length_b 69.490 _cell.length_c 83.740 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3RMP _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CP4-like integrase' 10102.696 2 ? ? 'arm-type binding domain (UNP residues 1-80)' ? 2 polymer syn "5'-D(*TP*AP*AP*TP*GP*AP*CP*CP*AP*CP*CP*AP*AP*TP*A)-3'" 4546.001 2 ? ? ? ? 3 polymer syn "5'-D(*TP*AP*TP*TP*GP*GP*TP*GP*GP*TP*CP*AP*TP*TP*A)-3'" 4630.017 2 ? ? ? ? 4 water nat water 18.015 45 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'HPI integrase, Int protein, prophage integrase' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKMLALNIN LEHHHHHH ; ;MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKMLALNIN LEHHHHHH ; A,C ? 2 polydeoxyribonucleotide no no '(DT)(DA)(DA)(DT)(DG)(DA)(DC)(DC)(DA)(DC)(DC)(DA)(DA)(DT)(DA)' TAATGACCACCAATA E,G ? 3 polydeoxyribonucleotide no no '(DT)(DA)(DT)(DT)(DG)(DG)(DT)(DG)(DG)(DT)(DC)(DA)(DT)(DT)(DA)' TATTGGTGGTCATTA F,H ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 LEU n 1 4 THR n 1 5 ASP n 1 6 ALA n 1 7 LYS n 1 8 ILE n 1 9 ARG n 1 10 THR n 1 11 LEU n 1 12 LYS n 1 13 PRO n 1 14 SER n 1 15 ASP n 1 16 LYS n 1 17 PRO n 1 18 PHE n 1 19 LYS n 1 20 VAL n 1 21 SER n 1 22 ASP n 1 23 SER n 1 24 HIS n 1 25 GLY n 1 26 LEU n 1 27 TYR n 1 28 LEU n 1 29 LEU n 1 30 VAL n 1 31 LYS n 1 32 PRO n 1 33 GLY n 1 34 GLY n 1 35 SER n 1 36 ARG n 1 37 HIS n 1 38 TRP n 1 39 TYR n 1 40 LEU n 1 41 LYS n 1 42 TYR n 1 43 ARG n 1 44 ILE n 1 45 SER n 1 46 GLY n 1 47 LYS n 1 48 GLU n 1 49 SER n 1 50 ARG n 1 51 ILE n 1 52 ALA n 1 53 LEU n 1 54 GLY n 1 55 ALA n 1 56 TYR n 1 57 PRO n 1 58 ALA n 1 59 ILE n 1 60 SER n 1 61 LEU n 1 62 SER n 1 63 ASP n 1 64 ALA n 1 65 ARG n 1 66 GLN n 1 67 GLN n 1 68 ARG n 1 69 GLU n 1 70 GLY n 1 71 ILE n 1 72 ARG n 1 73 LYS n 1 74 MET n 1 75 LEU n 1 76 ALA n 1 77 LEU n 1 78 ASN n 1 79 ILE n 1 80 ASN n 1 81 LEU n 1 82 GLU n 1 83 HIS n 1 84 HIS n 1 85 HIS n 1 86 HIS n 1 87 HIS n 1 88 HIS n 2 1 DT n 2 2 DA n 2 3 DA n 2 4 DT n 2 5 DG n 2 6 DA n 2 7 DC n 2 8 DC n 2 9 DA n 2 10 DC n 2 11 DC n 2 12 DA n 2 13 DA n 2 14 DT n 2 15 DA n 3 1 DT n 3 2 DA n 3 3 DT n 3 4 DT n 3 5 DG n 3 6 DG n 3 7 DT n 3 8 DG n 3 9 DG n 3 10 DT n 3 11 DC n 3 12 DA n 3 13 DT n 3 14 DT n 3 15 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'int, int2, YPO1917, YP_1660, y2393' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Yersinia pestis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 632 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET 21' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q9Z3B4_YERPE Q9Z3B4 1 ;MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKMLALNIN ; 1 ? 2 PDB 3RMP 3RMP 3 TATTGGTGGTCATTA ? ? 3 PDB 3RMP 3RMP 2 TAATGACCACCAATA ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3RMP A 1 ? 80 ? Q9Z3B4 1 ? 80 ? 1 80 2 1 3RMP C 1 ? 80 ? Q9Z3B4 1 ? 80 ? 1 80 3 2 3RMP F 1 ? 15 ? 3RMP 1 ? 15 ? 1 15 4 2 3RMP H 1 ? 15 ? 3RMP 1 ? 15 ? 1 15 5 3 3RMP E 1 ? 15 ? 3RMP 1 ? 15 ? 1 15 6 3 3RMP G 1 ? 15 ? 3RMP 1 ? 15 ? 1 15 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3RMP LEU A 81 ? UNP Q9Z3B4 ? ? 'expression tag' 81 1 1 3RMP GLU A 82 ? UNP Q9Z3B4 ? ? 'expression tag' 82 2 1 3RMP HIS A 83 ? UNP Q9Z3B4 ? ? 'expression tag' 83 3 1 3RMP HIS A 84 ? UNP Q9Z3B4 ? ? 'expression tag' 84 4 1 3RMP HIS A 85 ? UNP Q9Z3B4 ? ? 'expression tag' 85 5 1 3RMP HIS A 86 ? UNP Q9Z3B4 ? ? 'expression tag' 86 6 1 3RMP HIS A 87 ? UNP Q9Z3B4 ? ? 'expression tag' 87 7 1 3RMP HIS A 88 ? UNP Q9Z3B4 ? ? 'expression tag' 88 8 2 3RMP LEU C 81 ? UNP Q9Z3B4 ? ? 'expression tag' 81 9 2 3RMP GLU C 82 ? UNP Q9Z3B4 ? ? 'expression tag' 82 10 2 3RMP HIS C 83 ? UNP Q9Z3B4 ? ? 'expression tag' 83 11 2 3RMP HIS C 84 ? UNP Q9Z3B4 ? ? 'expression tag' 84 12 2 3RMP HIS C 85 ? UNP Q9Z3B4 ? ? 'expression tag' 85 13 2 3RMP HIS C 86 ? UNP Q9Z3B4 ? ? 'expression tag' 86 14 2 3RMP HIS C 87 ? UNP Q9Z3B4 ? ? 'expression tag' 87 15 2 3RMP HIS C 88 ? UNP Q9Z3B4 ? ? 'expression tag' 88 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3RMP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_percent_sol 46.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_details '65% MPD, 0.1 M sodium acetate, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 90 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2009-08-12 _diffrn_detector.details 'monochromator, mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Si _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9873 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_wavelength 0.9873 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3RMP _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 45.8 _reflns.d_resolution_high 2.1 _reflns.number_obs 14688 _reflns.number_all 21347 _reflns.percent_possible_obs 81.5 _reflns.pdbx_Rmerge_I_obs 0.066 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 17.09 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 3RMP _refine.ls_number_reflns_obs 13182 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.73 _refine.ls_d_res_high 2.21 _refine.ls_percent_reflns_obs 75.64 _refine.ls_R_factor_obs 0.23625 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23404 _refine.ls_R_factor_R_free 0.28021 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 695 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.893 _refine.correlation_coeff_Fo_to_Fc_free 0.856 _refine.B_iso_mean 25.701 _refine.aniso_B[1][1] -0.27 _refine.aniso_B[2][2] 0.17 _refine.aniso_B[3][3] 0.10 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY ; _refine.pdbx_starting_model 'PDB ENTRY 3JTZ' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.292 _refine.overall_SU_ML 0.193 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 7.685 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.455 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1184 _refine_hist.pdbx_number_atoms_nucleic_acid 1119 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 45 _refine_hist.number_atoms_total 2348 _refine_hist.d_res_high 2.21 _refine_hist.d_res_low 19.73 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.008 0.021 ? 2458 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2.847 2.536 ? 3546 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.153 5.000 ? 149 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 35.927 21.064 ? 47 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 17.414 15.000 ? 219 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 17.130 15.000 ? 13 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.370 0.200 ? 396 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.004 0.021 ? 1460 ? 'X-RAY DIFFRACTION' r_mcbond_it 0.618 1.500 ? 752 ? 'X-RAY DIFFRACTION' r_mcangle_it 1.143 2.000 ? 1195 ? 'X-RAY DIFFRACTION' r_scbond_it 1.112 3.000 ? 1706 ? 'X-RAY DIFFRACTION' r_scangle_it 1.902 4.500 ? 2351 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.210 _refine_ls_shell.d_res_low 2.267 _refine_ls_shell.number_reflns_R_work 500 _refine_ls_shell.R_factor_R_work 0.338 _refine_ls_shell.percent_reflns_obs 39.73 _refine_ls_shell.R_factor_R_free 0.371 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 32 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3RMP _struct.title 'Structural basis for the recognition of attP substrates by P4-like integrases' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3RMP _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text 'DNA BINDING PROTEIN-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 4 ? THR A 10 ? THR A 4 THR A 10 1 ? 7 HELX_P HELX_P2 2 SER A 60 ? ALA A 76 ? SER A 60 ALA A 76 1 ? 17 HELX_P HELX_P3 3 THR B 4 ? THR B 10 ? THR C 4 THR C 10 1 ? 7 HELX_P HELX_P4 4 SER B 60 ? ALA B 76 ? SER C 60 ALA C 76 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? C DA 2 N1 ? ? ? 1_555 D DT 14 N3 ? ? E DA 2 F DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C DA 2 N6 ? ? ? 1_555 D DT 14 O4 ? ? E DA 2 F DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DA 3 N1 ? ? ? 1_555 D DT 13 N3 ? ? E DA 3 F DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DA 3 N6 ? ? ? 1_555 D DT 13 O4 ? ? E DA 3 F DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DT 4 N3 ? ? ? 1_555 D DA 12 N1 ? ? E DT 4 F DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DT 4 O4 ? ? ? 1_555 D DA 12 N6 ? ? E DT 4 F DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DG 5 N1 ? ? ? 1_555 D DC 11 N3 ? ? E DG 5 F DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DG 5 N2 ? ? ? 1_555 D DC 11 O2 ? ? E DG 5 F DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DG 5 O6 ? ? ? 1_555 D DC 11 N4 ? ? E DG 5 F DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DA 6 N1 ? ? ? 1_555 D DT 10 N3 ? ? E DA 6 F DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DA 6 N6 ? ? ? 1_555 D DT 10 O4 ? ? E DA 6 F DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DC 7 N3 ? ? ? 1_555 D DG 9 N1 ? ? E DC 7 F DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DC 7 N4 ? ? ? 1_555 D DG 9 O6 ? ? E DC 7 F DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DC 7 O2 ? ? ? 1_555 D DG 9 N2 ? ? E DC 7 F DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DC 8 N3 ? ? ? 1_555 D DG 8 N1 ? ? E DC 8 F DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DC 8 N4 ? ? ? 1_555 D DG 8 O6 ? ? E DC 8 F DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DC 8 O2 ? ? ? 1_555 D DG 8 N2 ? ? E DC 8 F DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DA 9 N1 ? ? ? 1_555 D DT 7 N3 ? ? E DA 9 F DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DA 9 N6 ? ? ? 1_555 D DT 7 O4 ? ? E DA 9 F DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DC 10 N3 ? ? ? 1_555 D DG 6 N1 ? ? E DC 10 F DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DC 10 N4 ? ? ? 1_555 D DG 6 O6 ? ? E DC 10 F DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DC 10 O2 ? ? ? 1_555 D DG 6 N2 ? ? E DC 10 F DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DC 11 N3 ? ? ? 1_555 D DG 5 N1 ? ? E DC 11 F DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DC 11 N4 ? ? ? 1_555 D DG 5 O6 ? ? E DC 11 F DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DC 11 O2 ? ? ? 1_555 D DG 5 N2 ? ? E DC 11 F DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DA 12 N1 ? ? ? 1_555 D DT 4 N3 ? ? E DA 12 F DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DA 12 N6 ? ? ? 1_555 D DT 4 O4 ? ? E DA 12 F DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DA 13 N1 ? ? ? 1_555 D DT 3 N3 ? ? E DA 13 F DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DA 13 N6 ? ? ? 1_555 D DT 3 O4 ? ? E DA 13 F DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DT 14 N3 ? ? ? 1_555 D DA 2 N1 ? ? E DT 14 F DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DT 14 O4 ? ? ? 1_555 D DA 2 N6 ? ? E DT 14 F DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? E DA 2 N1 ? ? ? 1_555 F DT 14 N3 ? ? G DA 2 H DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? E DA 2 N6 ? ? ? 1_555 F DT 14 O4 ? ? G DA 2 H DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? E DA 3 N1 ? ? ? 1_555 F DT 13 N3 ? ? G DA 3 H DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? E DA 3 N6 ? ? ? 1_555 F DT 13 O4 ? ? G DA 3 H DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? E DT 4 N3 ? ? ? 1_555 F DA 12 N1 ? ? G DT 4 H DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? E DT 4 O4 ? ? ? 1_555 F DA 12 N6 ? ? G DT 4 H DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? E DG 5 N1 ? ? ? 1_555 F DC 11 N3 ? ? G DG 5 H DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? E DG 5 N2 ? ? ? 1_555 F DC 11 O2 ? ? G DG 5 H DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? E DG 5 O6 ? ? ? 1_555 F DC 11 N4 ? ? G DG 5 H DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? E DA 6 N1 ? ? ? 1_555 F DT 10 N3 ? ? G DA 6 H DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? E DA 6 N6 ? ? ? 1_555 F DT 10 O4 ? ? G DA 6 H DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? E DC 7 N3 ? ? ? 1_555 F DG 9 N1 ? ? G DC 7 H DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? E DC 7 N4 ? ? ? 1_555 F DG 9 O6 ? ? G DC 7 H DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? E DC 7 O2 ? ? ? 1_555 F DG 9 N2 ? ? G DC 7 H DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? E DC 8 N3 ? ? ? 1_555 F DG 8 N1 ? ? G DC 8 H DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? E DC 8 N4 ? ? ? 1_555 F DG 8 O6 ? ? G DC 8 H DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? E DC 8 O2 ? ? ? 1_555 F DG 8 N2 ? ? G DC 8 H DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? E DA 9 N1 ? ? ? 1_555 F DT 7 N3 ? ? G DA 9 H DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? E DA 9 N6 ? ? ? 1_555 F DT 7 O4 ? ? G DA 9 H DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? E DC 10 N3 ? ? ? 1_555 F DG 6 N1 ? ? G DC 10 H DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? E DC 10 N4 ? ? ? 1_555 F DG 6 O6 ? ? G DC 10 H DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? E DC 10 O2 ? ? ? 1_555 F DG 6 N2 ? ? G DC 10 H DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? E DC 11 N3 ? ? ? 1_555 F DG 5 N1 ? ? G DC 11 H DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? E DC 11 N4 ? ? ? 1_555 F DG 5 O6 ? ? G DC 11 H DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? E DC 11 O2 ? ? ? 1_555 F DG 5 N2 ? ? G DC 11 H DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? E DA 12 N1 ? ? ? 1_555 F DT 4 N3 ? ? G DA 12 H DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? E DA 12 N6 ? ? ? 1_555 F DT 4 O4 ? ? G DA 12 H DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? E DA 13 N1 ? ? ? 1_555 F DT 3 N3 ? ? G DA 13 H DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? E DA 13 N6 ? ? ? 1_555 F DT 3 O4 ? ? G DA 13 H DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? E DT 14 N3 ? ? ? 1_555 F DA 2 N1 ? ? G DT 14 H DA 2 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 56 A . ? TYR 56 A PRO 57 A ? PRO 57 A 1 7.79 2 LEU 77 A . ? LEU 77 A ASN 78 A ? ASN 78 A 1 0.38 3 TYR 56 B . ? TYR 56 C PRO 57 B ? PRO 57 C 1 6.12 4 LEU 77 B . ? LEU 77 C ASN 78 B ? ASN 78 C 1 -4.51 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 18 ? SER A 21 ? PHE A 18 SER A 21 A 2 LEU A 26 ? VAL A 30 ? LEU A 26 VAL A 30 A 3 ARG A 36 ? ILE A 44 ? ARG A 36 ILE A 44 A 4 LYS A 47 ? ALA A 55 ? LYS A 47 ALA A 55 B 1 PHE B 18 ? SER B 21 ? PHE C 18 SER C 21 B 2 LEU B 26 ? VAL B 30 ? LEU C 26 VAL C 30 B 3 ARG B 36 ? ILE B 44 ? ARG C 36 ILE C 44 B 4 LYS B 47 ? ALA B 55 ? LYS C 47 ALA C 55 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 18 ? N PHE A 18 O VAL A 30 ? O VAL A 30 A 2 3 N LEU A 29 ? N LEU A 29 O HIS A 37 ? O HIS A 37 A 3 4 N TRP A 38 ? N TRP A 38 O LEU A 53 ? O LEU A 53 B 1 2 N VAL B 20 ? N VAL C 20 O LEU B 28 ? O LEU C 28 B 2 3 N LEU B 29 ? N LEU C 29 O HIS B 37 ? O HIS C 37 B 3 4 N TYR B 42 ? N TYR C 42 O SER B 49 ? O SER C 49 # _database_PDB_matrix.entry_id 3RMP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3RMP _atom_sites.fract_transf_matrix[1][1] 0.016420 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014391 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011942 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 ASP 5 5 5 ASP ASP A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 PHE 18 18 18 PHE PHE A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 HIS 24 24 24 HIS HIS A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 HIS 37 37 37 HIS HIS A . n A 1 38 TRP 38 38 38 TRP TRP A . n A 1 39 TYR 39 39 39 TYR TYR A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 ARG 65 65 65 ARG ARG A . n A 1 66 GLN 66 66 66 GLN GLN A . n A 1 67 GLN 67 67 67 GLN GLN A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 MET 74 74 74 MET MET A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 ASN 78 78 78 ASN ASN A . n A 1 79 ILE 79 79 ? ? ? A . n A 1 80 ASN 80 80 ? ? ? A . n A 1 81 LEU 81 81 ? ? ? A . n A 1 82 GLU 82 82 ? ? ? A . n A 1 83 HIS 83 83 ? ? ? A . n A 1 84 HIS 84 84 ? ? ? A . n A 1 85 HIS 85 85 ? ? ? A . n A 1 86 HIS 86 86 ? ? ? A . n A 1 87 HIS 87 87 ? ? ? A . n A 1 88 HIS 88 88 ? ? ? A . n B 1 1 MET 1 1 ? ? ? C . n B 1 2 SER 2 2 2 SER SER C . n B 1 3 LEU 3 3 3 LEU LEU C . n B 1 4 THR 4 4 4 THR THR C . n B 1 5 ASP 5 5 5 ASP ASP C . n B 1 6 ALA 6 6 6 ALA ALA C . n B 1 7 LYS 7 7 7 LYS LYS C . n B 1 8 ILE 8 8 8 ILE ILE C . n B 1 9 ARG 9 9 9 ARG ARG C . n B 1 10 THR 10 10 10 THR THR C . n B 1 11 LEU 11 11 11 LEU LEU C . n B 1 12 LYS 12 12 12 LYS LYS C . n B 1 13 PRO 13 13 ? ? ? C . n B 1 14 SER 14 14 ? ? ? C . n B 1 15 ASP 15 15 15 ASP ASP C . n B 1 16 LYS 16 16 16 LYS LYS C . n B 1 17 PRO 17 17 17 PRO PRO C . n B 1 18 PHE 18 18 18 PHE PHE C . n B 1 19 LYS 19 19 19 LYS LYS C . n B 1 20 VAL 20 20 20 VAL VAL C . n B 1 21 SER 21 21 21 SER SER C . n B 1 22 ASP 22 22 22 ASP ASP C . n B 1 23 SER 23 23 23 SER SER C . n B 1 24 HIS 24 24 24 HIS HIS C . n B 1 25 GLY 25 25 25 GLY GLY C . n B 1 26 LEU 26 26 26 LEU LEU C . n B 1 27 TYR 27 27 27 TYR TYR C . n B 1 28 LEU 28 28 28 LEU LEU C . n B 1 29 LEU 29 29 29 LEU LEU C . n B 1 30 VAL 30 30 30 VAL VAL C . n B 1 31 LYS 31 31 31 LYS LYS C . n B 1 32 PRO 32 32 32 PRO PRO C . n B 1 33 GLY 33 33 33 GLY GLY C . n B 1 34 GLY 34 34 34 GLY GLY C . n B 1 35 SER 35 35 35 SER SER C . n B 1 36 ARG 36 36 36 ARG ARG C . n B 1 37 HIS 37 37 37 HIS HIS C . n B 1 38 TRP 38 38 38 TRP TRP C . n B 1 39 TYR 39 39 39 TYR TYR C . n B 1 40 LEU 40 40 40 LEU LEU C . n B 1 41 LYS 41 41 41 LYS LYS C . n B 1 42 TYR 42 42 42 TYR TYR C . n B 1 43 ARG 43 43 43 ARG ARG C . n B 1 44 ILE 44 44 44 ILE ILE C . n B 1 45 SER 45 45 45 SER SER C . n B 1 46 GLY 46 46 46 GLY GLY C . n B 1 47 LYS 47 47 47 LYS LYS C . n B 1 48 GLU 48 48 48 GLU GLU C . n B 1 49 SER 49 49 49 SER SER C . n B 1 50 ARG 50 50 50 ARG ARG C . n B 1 51 ILE 51 51 51 ILE ILE C . n B 1 52 ALA 52 52 52 ALA ALA C . n B 1 53 LEU 53 53 53 LEU LEU C . n B 1 54 GLY 54 54 54 GLY GLY C . n B 1 55 ALA 55 55 55 ALA ALA C . n B 1 56 TYR 56 56 56 TYR TYR C . n B 1 57 PRO 57 57 57 PRO PRO C . n B 1 58 ALA 58 58 58 ALA ALA C . n B 1 59 ILE 59 59 59 ILE ILE C . n B 1 60 SER 60 60 60 SER SER C . n B 1 61 LEU 61 61 61 LEU LEU C . n B 1 62 SER 62 62 62 SER SER C . n B 1 63 ASP 63 63 63 ASP ASP C . n B 1 64 ALA 64 64 64 ALA ALA C . n B 1 65 ARG 65 65 65 ARG ARG C . n B 1 66 GLN 66 66 66 GLN GLN C . n B 1 67 GLN 67 67 67 GLN GLN C . n B 1 68 ARG 68 68 68 ARG ARG C . n B 1 69 GLU 69 69 69 GLU GLU C . n B 1 70 GLY 70 70 70 GLY GLY C . n B 1 71 ILE 71 71 71 ILE ILE C . n B 1 72 ARG 72 72 72 ARG ARG C . n B 1 73 LYS 73 73 73 LYS LYS C . n B 1 74 MET 74 74 74 MET MET C . n B 1 75 LEU 75 75 75 LEU LEU C . n B 1 76 ALA 76 76 76 ALA ALA C . n B 1 77 LEU 77 77 77 LEU LEU C . n B 1 78 ASN 78 78 78 ASN ASN C . n B 1 79 ILE 79 79 ? ? ? C . n B 1 80 ASN 80 80 ? ? ? C . n B 1 81 LEU 81 81 ? ? ? C . n B 1 82 GLU 82 82 ? ? ? C . n B 1 83 HIS 83 83 ? ? ? C . n B 1 84 HIS 84 84 ? ? ? C . n B 1 85 HIS 85 85 ? ? ? C . n B 1 86 HIS 86 86 ? ? ? C . n B 1 87 HIS 87 87 ? ? ? C . n B 1 88 HIS 88 88 ? ? ? C . n C 2 1 DT 1 1 1 DT DT E . n C 2 2 DA 2 2 2 DA DA E . n C 2 3 DA 3 3 3 DA DA E . n C 2 4 DT 4 4 4 DT DT E . n C 2 5 DG 5 5 5 DG DG E . n C 2 6 DA 6 6 6 DA DA E . n C 2 7 DC 7 7 7 DC DC E . n C 2 8 DC 8 8 8 DC DC E . n C 2 9 DA 9 9 9 DA DA E . n C 2 10 DC 10 10 10 DC DC E . n C 2 11 DC 11 11 11 DC DC E . n C 2 12 DA 12 12 12 DA DA E . n C 2 13 DA 13 13 13 DA DA E . n C 2 14 DT 14 14 14 DT DT E . n C 2 15 DA 15 15 ? ? ? E . n D 3 1 DT 1 1 ? ? ? F . n D 3 2 DA 2 2 2 DA DA F . n D 3 3 DT 3 3 3 DT DT F . n D 3 4 DT 4 4 4 DT DT F . n D 3 5 DG 5 5 5 DG DG F . n D 3 6 DG 6 6 6 DG DG F . n D 3 7 DT 7 7 7 DT DT F . n D 3 8 DG 8 8 8 DG DG F . n D 3 9 DG 9 9 9 DG DG F . n D 3 10 DT 10 10 10 DT DT F . n D 3 11 DC 11 11 11 DC DC F . n D 3 12 DA 12 12 12 DA DA F . n D 3 13 DT 13 13 13 DT DT F . n D 3 14 DT 14 14 14 DT DT F . n D 3 15 DA 15 15 ? ? ? F . n E 2 1 DT 1 1 1 DT DT G . n E 2 2 DA 2 2 2 DA DA G . n E 2 3 DA 3 3 3 DA DA G . n E 2 4 DT 4 4 4 DT DT G . n E 2 5 DG 5 5 5 DG DG G . n E 2 6 DA 6 6 6 DA DA G . n E 2 7 DC 7 7 7 DC DC G . n E 2 8 DC 8 8 8 DC DC G . n E 2 9 DA 9 9 9 DA DA G . n E 2 10 DC 10 10 10 DC DC G . n E 2 11 DC 11 11 11 DC DC G . n E 2 12 DA 12 12 12 DA DA G . n E 2 13 DA 13 13 13 DA DA G . n E 2 14 DT 14 14 14 DT DT G . n E 2 15 DA 15 15 15 DA DA G . n F 3 1 DT 1 1 ? ? ? H . n F 3 2 DA 2 2 2 DA DA H . n F 3 3 DT 3 3 3 DT DT H . n F 3 4 DT 4 4 4 DT DT H . n F 3 5 DG 5 5 5 DG DG H . n F 3 6 DG 6 6 6 DG DG H . n F 3 7 DT 7 7 7 DT DT H . n F 3 8 DG 8 8 8 DG DG H . n F 3 9 DG 9 9 9 DG DG H . n F 3 10 DT 10 10 10 DT DT H . n F 3 11 DC 11 11 11 DC DC H . n F 3 12 DA 12 12 12 DA DA H . n F 3 13 DT 13 13 13 DT DT H . n F 3 14 DT 14 14 14 DT DT H . n F 3 15 DA 15 15 ? ? ? H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 HOH 1 89 1 HOH HOH A . G 4 HOH 2 90 3 HOH HOH A . G 4 HOH 3 91 5 HOH HOH A . G 4 HOH 4 92 6 HOH HOH A . G 4 HOH 5 93 10 HOH HOH A . G 4 HOH 6 94 12 HOH HOH A . G 4 HOH 7 95 14 HOH HOH A . G 4 HOH 8 96 15 HOH HOH A . G 4 HOH 9 97 21 HOH HOH A . G 4 HOH 10 98 22 HOH HOH A . G 4 HOH 11 99 23 HOH HOH A . G 4 HOH 12 100 32 HOH HOH A . G 4 HOH 13 101 34 HOH HOH A . G 4 HOH 14 102 36 HOH HOH A . G 4 HOH 15 103 38 HOH HOH A . G 4 HOH 16 104 39 HOH HOH A . G 4 HOH 17 105 41 HOH HOH A . G 4 HOH 18 106 43 HOH HOH A . G 4 HOH 19 107 46 HOH HOH A . H 4 HOH 1 89 2 HOH HOH C . H 4 HOH 2 90 4 HOH HOH C . H 4 HOH 3 91 8 HOH HOH C . H 4 HOH 4 92 9 HOH HOH C . H 4 HOH 5 93 11 HOH HOH C . H 4 HOH 6 94 18 HOH HOH C . H 4 HOH 7 95 24 HOH HOH C . H 4 HOH 8 96 29 HOH HOH C . H 4 HOH 9 97 30 HOH HOH C . H 4 HOH 10 98 33 HOH HOH C . H 4 HOH 11 99 37 HOH HOH C . I 4 HOH 1 16 16 HOH HOH E . I 4 HOH 2 19 19 HOH HOH E . I 4 HOH 3 20 20 HOH HOH E . J 4 HOH 1 17 17 HOH HOH F . J 4 HOH 2 40 40 HOH HOH F . J 4 HOH 3 48 48 HOH HOH F . K 4 HOH 1 27 27 HOH HOH G . K 4 HOH 2 28 28 HOH HOH G . K 4 HOH 3 42 42 HOH HOH G . K 4 HOH 4 45 45 HOH HOH G . K 4 HOH 5 50 50 HOH HOH G . L 4 HOH 1 25 25 HOH HOH H . L 4 HOH 2 26 26 HOH HOH H . L 4 HOH 3 31 31 HOH HOH H . L 4 HOH 4 35 35 HOH HOH H . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7720 ? 1 MORE -44 ? 1 'SSA (A^2)' 15530 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-04-25 2 'Structure model' 1 1 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.5.0072 ? 3 XDS 'data reduction' . ? 4 XSCALE 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NH1 _pdbx_validate_close_contact.auth_asym_id_1 C _pdbx_validate_close_contact.auth_comp_id_1 ARG _pdbx_validate_close_contact.auth_seq_id_1 72 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OP2 _pdbx_validate_close_contact.auth_asym_id_2 F _pdbx_validate_close_contact.auth_comp_id_2 DG _pdbx_validate_close_contact.auth_seq_id_2 5 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.95 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" E DT 1 ? ? "O3'" E DT 1 ? ? P E DA 2 ? ? 133.33 119.70 13.63 1.20 Y 2 1 "O3'" E DT 1 ? ? P E DA 2 ? ? "O5'" E DA 2 ? ? 88.60 104.00 -15.40 1.90 Y 3 1 "O3'" E DT 1 ? ? P E DA 2 ? ? OP2 E DA 2 ? ? 84.58 105.20 -20.62 2.20 Y 4 1 "O3'" E DT 1 ? ? P E DA 2 ? ? OP1 E DA 2 ? ? 89.47 105.20 -15.73 2.20 Y 5 1 "O3'" E DG 5 ? ? P E DA 6 ? ? "O5'" E DA 6 ? ? 82.88 104.00 -21.12 1.90 Y 6 1 "O3'" E DG 5 ? ? P E DA 6 ? ? OP2 E DA 6 ? ? 89.90 105.20 -15.30 2.20 Y 7 1 "O3'" E DG 5 ? ? P E DA 6 ? ? OP1 E DA 6 ? ? 86.48 105.20 -18.72 2.20 Y 8 1 "O3'" E DC 7 ? ? P E DC 8 ? ? "O5'" E DC 8 ? ? 85.97 104.00 -18.03 1.90 Y 9 1 "O3'" E DC 7 ? ? P E DC 8 ? ? OP2 E DC 8 ? ? 91.50 105.20 -13.70 2.20 Y 10 1 "O3'" E DC 7 ? ? P E DC 8 ? ? OP1 E DC 8 ? ? 83.63 105.20 -21.57 2.20 Y 11 1 "O4'" E DC 8 ? ? "C1'" E DC 8 ? ? N1 E DC 8 ? ? 114.11 108.30 5.81 0.30 N 12 1 "O4'" E DA 9 ? ? "C1'" E DA 9 ? ? N9 E DA 9 ? ? 110.89 108.30 2.59 0.30 N 13 1 "O4'" E DC 10 ? ? "C1'" E DC 10 ? ? N1 E DC 10 ? ? 110.84 108.30 2.54 0.30 N 14 1 "C3'" E DC 10 ? ? "O3'" E DC 10 ? ? P E DC 11 ? ? 128.05 119.70 8.35 1.20 Y 15 1 "O3'" E DC 10 ? ? P E DC 11 ? ? "O5'" E DC 11 ? ? 87.34 104.00 -16.66 1.90 Y 16 1 "O3'" E DC 10 ? ? P E DC 11 ? ? OP1 E DC 11 ? ? 79.28 105.20 -25.92 2.20 Y 17 1 OP1 E DC 11 ? ? P E DC 11 ? ? OP2 E DC 11 ? ? 129.15 119.60 9.55 1.50 N 18 1 "O5'" E DC 11 ? ? P E DC 11 ? ? OP1 E DC 11 ? ? 118.98 110.70 8.28 1.20 N 19 1 "O4'" E DC 11 ? ? "C1'" E DC 11 ? ? N1 E DC 11 ? ? 110.59 108.30 2.29 0.30 N 20 1 "O3'" E DC 11 ? ? P E DA 12 ? ? "O5'" E DA 12 ? ? 81.79 104.00 -22.21 1.90 Y 21 1 "O3'" E DC 11 ? ? P E DA 12 ? ? OP2 E DA 12 ? ? 87.67 105.20 -17.53 2.20 Y 22 1 OP1 E DA 12 ? ? P E DA 12 ? ? OP2 E DA 12 ? ? 129.23 119.60 9.63 1.50 N 23 1 "O5'" E DA 12 ? ? P E DA 12 ? ? OP2 E DA 12 ? ? 119.72 110.70 9.02 1.20 N 24 1 "O4'" E DA 12 ? ? "C1'" E DA 12 ? ? N9 E DA 12 ? ? 103.18 108.00 -4.82 0.70 N 25 1 "O4'" E DA 13 ? ? "C1'" E DA 13 ? ? N9 E DA 13 ? ? 110.44 108.30 2.14 0.30 N 26 1 "C3'" E DA 13 ? ? "O3'" E DA 13 ? ? P E DT 14 ? ? 127.89 119.70 8.19 1.20 Y 27 1 "O4'" F DT 4 ? ? "C1'" F DT 4 ? ? N1 F DT 4 ? ? 110.80 108.30 2.50 0.30 N 28 1 "C3'" F DT 7 ? ? "O3'" F DT 7 ? ? P F DG 8 ? ? 127.39 119.70 7.69 1.20 Y 29 1 "O3'" F DT 7 ? ? P F DG 8 ? ? "O5'" F DG 8 ? ? 81.17 104.00 -22.83 1.90 Y 30 1 "O3'" F DT 7 ? ? P F DG 8 ? ? OP2 F DG 8 ? ? 91.68 105.20 -13.52 2.20 Y 31 1 "O3'" F DT 7 ? ? P F DG 8 ? ? OP1 F DG 8 ? ? 84.85 105.20 -20.35 2.20 Y 32 1 "O5'" F DG 8 ? ? P F DG 8 ? ? OP1 F DG 8 ? ? 118.61 110.70 7.91 1.20 N 33 1 "C1'" F DG 8 ? ? "O4'" F DG 8 ? ? "C4'" F DG 8 ? ? 103.41 110.10 -6.69 1.00 N 34 1 "O4'" F DG 8 ? ? "C1'" F DG 8 ? ? N9 F DG 8 ? ? 115.09 108.30 6.79 0.30 N 35 1 "C3'" F DG 8 ? ? "O3'" F DG 8 ? ? P F DG 9 ? ? 129.18 119.70 9.48 1.20 Y 36 1 "O3'" F DG 8 ? ? P F DG 9 ? ? OP2 F DG 9 ? ? 87.80 105.20 -17.40 2.20 Y 37 1 "O3'" F DG 8 ? ? P F DG 9 ? ? OP1 F DG 9 ? ? 86.02 105.20 -19.18 2.20 Y 38 1 OP1 F DG 9 ? ? P F DG 9 ? ? OP2 F DG 9 ? ? 130.42 119.60 10.82 1.50 N 39 1 "O4'" F DG 9 ? ? "C1'" F DG 9 ? ? N9 F DG 9 ? ? 111.65 108.30 3.35 0.30 N 40 1 "O3'" F DT 10 ? ? P F DC 11 ? ? "O5'" F DC 11 ? ? 85.91 104.00 -18.09 1.90 Y 41 1 "O3'" F DT 10 ? ? P F DC 11 ? ? OP2 F DC 11 ? ? 91.21 105.20 -13.99 2.20 Y 42 1 "O3'" F DT 10 ? ? P F DC 11 ? ? OP1 F DC 11 ? ? 82.46 105.20 -22.74 2.20 Y 43 1 "O4'" F DC 11 ? ? "C1'" F DC 11 ? ? N1 F DC 11 ? ? 110.72 108.30 2.42 0.30 N 44 1 "O4'" G DT 1 ? ? "C1'" G DT 1 ? ? N1 G DT 1 ? ? 112.16 108.30 3.86 0.30 N 45 1 "C3'" G DG 5 ? ? "O3'" G DG 5 ? ? P G DA 6 ? ? 127.14 119.70 7.44 1.20 Y 46 1 "O3'" G DG 5 ? ? P G DA 6 ? ? "O5'" G DA 6 ? ? 84.54 104.00 -19.46 1.90 Y 47 1 "O3'" G DG 5 ? ? P G DA 6 ? ? OP1 G DA 6 ? ? 84.63 105.20 -20.57 2.20 Y 48 1 "C1'" G DC 7 ? ? "O4'" G DC 7 ? ? "C4'" G DC 7 ? ? 101.04 110.10 -9.06 1.00 N 49 1 "C3'" G DC 7 ? ? "C2'" G DC 7 ? ? "C1'" G DC 7 ? ? 96.60 102.40 -5.80 0.80 N 50 1 "O4'" G DC 7 ? ? "C1'" G DC 7 ? ? N1 G DC 7 ? ? 118.43 108.30 10.13 0.30 N 51 1 "C3'" G DC 7 ? ? "O3'" G DC 7 ? ? P G DC 8 ? ? 128.43 119.70 8.73 1.20 Y 52 1 "O3'" G DC 7 ? ? P G DC 8 ? ? "O5'" G DC 8 ? ? 79.17 104.00 -24.83 1.90 Y 53 1 "O3'" G DC 7 ? ? P G DC 8 ? ? OP1 G DC 8 ? ? 88.85 105.20 -16.35 2.20 Y 54 1 "O5'" G DC 8 ? ? P G DC 8 ? ? OP1 G DC 8 ? ? 118.41 110.70 7.71 1.20 N 55 1 "O4'" G DC 8 ? ? "C1'" G DC 8 ? ? N1 G DC 8 ? ? 111.12 108.30 2.82 0.30 N 56 1 "O3'" G DC 10 ? ? P G DC 11 ? ? "O5'" G DC 11 ? ? 85.65 104.00 -18.35 1.90 Y 57 1 "O3'" G DC 10 ? ? P G DC 11 ? ? OP2 G DC 11 ? ? 89.89 105.20 -15.31 2.20 Y 58 1 "O3'" G DC 10 ? ? P G DC 11 ? ? OP1 G DC 11 ? ? 83.73 105.20 -21.47 2.20 Y 59 1 "O4'" G DC 11 ? ? "C1'" G DC 11 ? ? N1 G DC 11 ? ? 113.48 108.30 5.18 0.30 N 60 1 "O3'" G DC 11 ? ? P G DA 12 ? ? "O5'" G DA 12 ? ? 87.12 104.00 -16.88 1.90 Y 61 1 "O3'" G DC 11 ? ? P G DA 12 ? ? OP2 G DA 12 ? ? 87.71 105.20 -17.49 2.20 Y 62 1 "O3'" G DC 11 ? ? P G DA 12 ? ? OP1 G DA 12 ? ? 86.73 105.20 -18.47 2.20 Y 63 1 "C3'" H DT 3 ? ? "O3'" H DT 3 ? ? P H DT 4 ? ? 127.08 119.70 7.38 1.20 Y 64 1 "O4'" H DT 4 ? ? "C1'" H DT 4 ? ? N1 H DT 4 ? ? 111.40 108.30 3.10 0.30 N 65 1 "O4'" H DT 7 ? ? "C1'" H DT 7 ? ? N1 H DT 7 ? ? 112.66 108.30 4.36 0.30 N 66 1 "C3'" H DT 7 ? ? "O3'" H DT 7 ? ? P H DG 8 ? ? 129.78 119.70 10.08 1.20 Y 67 1 "O3'" H DT 7 ? ? P H DG 8 ? ? "O5'" H DG 8 ? ? 85.51 104.00 -18.49 1.90 Y 68 1 "O3'" H DT 7 ? ? P H DG 8 ? ? OP2 H DG 8 ? ? 82.75 105.20 -22.45 2.20 Y 69 1 "O3'" H DT 7 ? ? P H DG 8 ? ? OP1 H DG 8 ? ? 89.15 105.20 -16.05 2.20 Y 70 1 "C1'" H DG 8 ? ? "O4'" H DG 8 ? ? "C4'" H DG 8 ? ? 102.73 110.10 -7.37 1.00 N 71 1 "O4'" H DG 8 ? ? "C1'" H DG 8 ? ? N9 H DG 8 ? ? 115.37 108.30 7.07 0.30 N 72 1 "C3'" H DG 8 ? ? "O3'" H DG 8 ? ? P H DG 9 ? ? 129.76 119.70 10.06 1.20 Y 73 1 "O3'" H DG 8 ? ? P H DG 9 ? ? "O5'" H DG 9 ? ? 89.99 104.00 -14.01 1.90 Y 74 1 "O3'" H DG 8 ? ? P H DG 9 ? ? OP2 H DG 9 ? ? 82.26 105.20 -22.94 2.20 Y 75 1 "O3'" H DG 8 ? ? P H DG 9 ? ? OP1 H DG 9 ? ? 87.65 105.20 -17.55 2.20 Y 76 1 OP1 H DG 9 ? ? P H DG 9 ? ? OP2 H DG 9 ? ? 130.75 119.60 11.15 1.50 N 77 1 "O4'" H DT 10 ? ? "C1'" H DT 10 ? ? N1 H DT 10 ? ? 111.21 108.30 2.91 0.30 N 78 1 "O3'" H DT 10 ? ? P H DC 11 ? ? "O5'" H DC 11 ? ? 86.46 104.00 -17.54 1.90 Y 79 1 "O3'" H DT 10 ? ? P H DC 11 ? ? OP2 H DC 11 ? ? 91.30 105.20 -13.90 2.20 Y 80 1 "O3'" H DT 10 ? ? P H DC 11 ? ? OP1 H DC 11 ? ? 81.07 105.20 -24.13 2.20 Y 81 1 OP1 H DC 11 ? ? P H DC 11 ? ? OP2 H DC 11 ? ? 130.27 119.60 10.67 1.50 N 82 1 "O5'" H DC 11 ? ? P H DC 11 ? ? OP1 H DC 11 ? ? 119.24 110.70 8.54 1.20 N 83 1 "O4'" H DA 12 ? ? "C1'" H DA 12 ? ? N9 H DA 12 ? ? 111.49 108.30 3.19 0.30 N 84 1 "C3'" H DA 12 ? ? "O3'" H DA 12 ? ? P H DT 13 ? ? 129.05 119.70 9.35 1.20 Y 85 1 "O4'" H DT 13 ? ? "C1'" H DT 13 ? ? N1 H DT 13 ? ? 110.86 108.30 2.56 0.30 N 86 1 "O4'" H DT 14 ? ? "C1'" H DT 14 ? ? N1 H DT 14 ? ? 110.28 108.30 1.98 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 22 ? ? -93.37 -96.95 2 1 ALA A 76 ? ? -59.67 10.15 3 1 LEU C 11 ? ? -74.37 -162.51 4 1 ASP C 22 ? ? -95.99 -90.53 5 1 SER C 45 ? ? 34.53 58.58 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 12 ? CD ? A LYS 12 CD 2 1 Y 1 A LYS 12 ? CE ? A LYS 12 CE 3 1 Y 1 A LYS 12 ? NZ ? A LYS 12 NZ 4 1 Y 1 A LYS 16 ? CE ? A LYS 16 CE 5 1 Y 1 A LYS 16 ? NZ ? A LYS 16 NZ 6 1 Y 1 C ARG 9 ? CG ? B ARG 9 CG 7 1 Y 1 C ARG 9 ? CD ? B ARG 9 CD 8 1 Y 1 C ARG 9 ? NE ? B ARG 9 NE 9 1 Y 1 C ARG 9 ? CZ ? B ARG 9 CZ 10 1 Y 1 C ARG 9 ? NH1 ? B ARG 9 NH1 11 1 Y 1 C ARG 9 ? NH2 ? B ARG 9 NH2 12 1 Y 1 C LYS 12 ? CG ? B LYS 12 CG 13 1 Y 1 C LYS 12 ? CD ? B LYS 12 CD 14 1 Y 1 C LYS 12 ? CE ? B LYS 12 CE 15 1 Y 1 C LYS 12 ? NZ ? B LYS 12 NZ 16 1 Y 1 C LYS 16 ? CG ? B LYS 16 CG 17 1 Y 1 C LYS 16 ? CD ? B LYS 16 CD 18 1 Y 1 C LYS 16 ? CE ? B LYS 16 CE 19 1 Y 1 C LYS 16 ? NZ ? B LYS 16 NZ 20 1 Y 1 C LYS 31 ? NZ ? B LYS 31 NZ 21 1 Y 1 C LYS 47 ? CD ? B LYS 47 CD 22 1 Y 1 C LYS 47 ? CE ? B LYS 47 CE 23 1 Y 1 C LYS 47 ? NZ ? B LYS 47 NZ 24 1 Y 1 E DT 1 ? "O5'" ? C DT 1 "O5'" 25 1 Y 1 G DT 1 ? "O5'" ? E DT 1 "O5'" # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ILE 79 ? A ILE 79 3 1 Y 1 A ASN 80 ? A ASN 80 4 1 Y 1 A LEU 81 ? A LEU 81 5 1 Y 1 A GLU 82 ? A GLU 82 6 1 Y 1 A HIS 83 ? A HIS 83 7 1 Y 1 A HIS 84 ? A HIS 84 8 1 Y 1 A HIS 85 ? A HIS 85 9 1 Y 1 A HIS 86 ? A HIS 86 10 1 Y 1 A HIS 87 ? A HIS 87 11 1 Y 1 A HIS 88 ? A HIS 88 12 1 Y 1 C MET 1 ? B MET 1 13 1 Y 1 C PRO 13 ? B PRO 13 14 1 Y 1 C SER 14 ? B SER 14 15 1 Y 1 C ILE 79 ? B ILE 79 16 1 Y 1 C ASN 80 ? B ASN 80 17 1 Y 1 C LEU 81 ? B LEU 81 18 1 Y 1 C GLU 82 ? B GLU 82 19 1 Y 1 C HIS 83 ? B HIS 83 20 1 Y 1 C HIS 84 ? B HIS 84 21 1 Y 1 C HIS 85 ? B HIS 85 22 1 Y 1 C HIS 86 ? B HIS 86 23 1 Y 1 C HIS 87 ? B HIS 87 24 1 Y 1 C HIS 88 ? B HIS 88 25 1 Y 1 E DA 15 ? C DA 15 26 1 Y 1 F DT 1 ? D DT 1 27 1 Y 1 F DA 15 ? D DA 15 28 1 Y 1 H DT 1 ? F DT 1 29 1 Y 1 H DA 15 ? F DA 15 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 HIS N N N N 266 HIS CA C N S 267 HIS C C N N 268 HIS O O N N 269 HIS CB C N N 270 HIS CG C Y N 271 HIS ND1 N Y N 272 HIS CD2 C Y N 273 HIS CE1 C Y N 274 HIS NE2 N Y N 275 HIS OXT O N N 276 HIS H H N N 277 HIS H2 H N N 278 HIS HA H N N 279 HIS HB2 H N N 280 HIS HB3 H N N 281 HIS HD1 H N N 282 HIS HD2 H N N 283 HIS HE1 H N N 284 HIS HE2 H N N 285 HIS HXT H N N 286 HOH O O N N 287 HOH H1 H N N 288 HOH H2 H N N 289 ILE N N N N 290 ILE CA C N S 291 ILE C C N N 292 ILE O O N N 293 ILE CB C N S 294 ILE CG1 C N N 295 ILE CG2 C N N 296 ILE CD1 C N N 297 ILE OXT O N N 298 ILE H H N N 299 ILE H2 H N N 300 ILE HA H N N 301 ILE HB H N N 302 ILE HG12 H N N 303 ILE HG13 H N N 304 ILE HG21 H N N 305 ILE HG22 H N N 306 ILE HG23 H N N 307 ILE HD11 H N N 308 ILE HD12 H N N 309 ILE HD13 H N N 310 ILE HXT H N N 311 LEU N N N N 312 LEU CA C N S 313 LEU C C N N 314 LEU O O N N 315 LEU CB C N N 316 LEU CG C N N 317 LEU CD1 C N N 318 LEU CD2 C N N 319 LEU OXT O N N 320 LEU H H N N 321 LEU H2 H N N 322 LEU HA H N N 323 LEU HB2 H N N 324 LEU HB3 H N N 325 LEU HG H N N 326 LEU HD11 H N N 327 LEU HD12 H N N 328 LEU HD13 H N N 329 LEU HD21 H N N 330 LEU HD22 H N N 331 LEU HD23 H N N 332 LEU HXT H N N 333 LYS N N N N 334 LYS CA C N S 335 LYS C C N N 336 LYS O O N N 337 LYS CB C N N 338 LYS CG C N N 339 LYS CD C N N 340 LYS CE C N N 341 LYS NZ N N N 342 LYS OXT O N N 343 LYS H H N N 344 LYS H2 H N N 345 LYS HA H N N 346 LYS HB2 H N N 347 LYS HB3 H N N 348 LYS HG2 H N N 349 LYS HG3 H N N 350 LYS HD2 H N N 351 LYS HD3 H N N 352 LYS HE2 H N N 353 LYS HE3 H N N 354 LYS HZ1 H N N 355 LYS HZ2 H N N 356 LYS HZ3 H N N 357 LYS HXT H N N 358 MET N N N N 359 MET CA C N S 360 MET C C N N 361 MET O O N N 362 MET CB C N N 363 MET CG C N N 364 MET SD S N N 365 MET CE C N N 366 MET OXT O N N 367 MET H H N N 368 MET H2 H N N 369 MET HA H N N 370 MET HB2 H N N 371 MET HB3 H N N 372 MET HG2 H N N 373 MET HG3 H N N 374 MET HE1 H N N 375 MET HE2 H N N 376 MET HE3 H N N 377 MET HXT H N N 378 PHE N N N N 379 PHE CA C N S 380 PHE C C N N 381 PHE O O N N 382 PHE CB C N N 383 PHE CG C Y N 384 PHE CD1 C Y N 385 PHE CD2 C Y N 386 PHE CE1 C Y N 387 PHE CE2 C Y N 388 PHE CZ C Y N 389 PHE OXT O N N 390 PHE H H N N 391 PHE H2 H N N 392 PHE HA H N N 393 PHE HB2 H N N 394 PHE HB3 H N N 395 PHE HD1 H N N 396 PHE HD2 H N N 397 PHE HE1 H N N 398 PHE HE2 H N N 399 PHE HZ H N N 400 PHE HXT H N N 401 PRO N N N N 402 PRO CA C N S 403 PRO C C N N 404 PRO O O N N 405 PRO CB C N N 406 PRO CG C N N 407 PRO CD C N N 408 PRO OXT O N N 409 PRO H H N N 410 PRO HA H N N 411 PRO HB2 H N N 412 PRO HB3 H N N 413 PRO HG2 H N N 414 PRO HG3 H N N 415 PRO HD2 H N N 416 PRO HD3 H N N 417 PRO HXT H N N 418 SER N N N N 419 SER CA C N S 420 SER C C N N 421 SER O O N N 422 SER CB C N N 423 SER OG O N N 424 SER OXT O N N 425 SER H H N N 426 SER H2 H N N 427 SER HA H N N 428 SER HB2 H N N 429 SER HB3 H N N 430 SER HG H N N 431 SER HXT H N N 432 THR N N N N 433 THR CA C N S 434 THR C C N N 435 THR O O N N 436 THR CB C N R 437 THR OG1 O N N 438 THR CG2 C N N 439 THR OXT O N N 440 THR H H N N 441 THR H2 H N N 442 THR HA H N N 443 THR HB H N N 444 THR HG1 H N N 445 THR HG21 H N N 446 THR HG22 H N N 447 THR HG23 H N N 448 THR HXT H N N 449 TRP N N N N 450 TRP CA C N S 451 TRP C C N N 452 TRP O O N N 453 TRP CB C N N 454 TRP CG C Y N 455 TRP CD1 C Y N 456 TRP CD2 C Y N 457 TRP NE1 N Y N 458 TRP CE2 C Y N 459 TRP CE3 C Y N 460 TRP CZ2 C Y N 461 TRP CZ3 C Y N 462 TRP CH2 C Y N 463 TRP OXT O N N 464 TRP H H N N 465 TRP H2 H N N 466 TRP HA H N N 467 TRP HB2 H N N 468 TRP HB3 H N N 469 TRP HD1 H N N 470 TRP HE1 H N N 471 TRP HE3 H N N 472 TRP HZ2 H N N 473 TRP HZ3 H N N 474 TRP HH2 H N N 475 TRP HXT H N N 476 TYR N N N N 477 TYR CA C N S 478 TYR C C N N 479 TYR O O N N 480 TYR CB C N N 481 TYR CG C Y N 482 TYR CD1 C Y N 483 TYR CD2 C Y N 484 TYR CE1 C Y N 485 TYR CE2 C Y N 486 TYR CZ C Y N 487 TYR OH O N N 488 TYR OXT O N N 489 TYR H H N N 490 TYR H2 H N N 491 TYR HA H N N 492 TYR HB2 H N N 493 TYR HB3 H N N 494 TYR HD1 H N N 495 TYR HD2 H N N 496 TYR HE1 H N N 497 TYR HE2 H N N 498 TYR HH H N N 499 TYR HXT H N N 500 VAL N N N N 501 VAL CA C N S 502 VAL C C N N 503 VAL O O N N 504 VAL CB C N N 505 VAL CG1 C N N 506 VAL CG2 C N N 507 VAL OXT O N N 508 VAL H H N N 509 VAL H2 H N N 510 VAL HA H N N 511 VAL HB H N N 512 VAL HG11 H N N 513 VAL HG12 H N N 514 VAL HG13 H N N 515 VAL HG21 H N N 516 VAL HG22 H N N 517 VAL HG23 H N N 518 VAL HXT H N N 519 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HIS N CA sing N N 265 HIS N H sing N N 266 HIS N H2 sing N N 267 HIS CA C sing N N 268 HIS CA CB sing N N 269 HIS CA HA sing N N 270 HIS C O doub N N 271 HIS C OXT sing N N 272 HIS CB CG sing N N 273 HIS CB HB2 sing N N 274 HIS CB HB3 sing N N 275 HIS CG ND1 sing Y N 276 HIS CG CD2 doub Y N 277 HIS ND1 CE1 doub Y N 278 HIS ND1 HD1 sing N N 279 HIS CD2 NE2 sing Y N 280 HIS CD2 HD2 sing N N 281 HIS CE1 NE2 sing Y N 282 HIS CE1 HE1 sing N N 283 HIS NE2 HE2 sing N N 284 HIS OXT HXT sing N N 285 HOH O H1 sing N N 286 HOH O H2 sing N N 287 ILE N CA sing N N 288 ILE N H sing N N 289 ILE N H2 sing N N 290 ILE CA C sing N N 291 ILE CA CB sing N N 292 ILE CA HA sing N N 293 ILE C O doub N N 294 ILE C OXT sing N N 295 ILE CB CG1 sing N N 296 ILE CB CG2 sing N N 297 ILE CB HB sing N N 298 ILE CG1 CD1 sing N N 299 ILE CG1 HG12 sing N N 300 ILE CG1 HG13 sing N N 301 ILE CG2 HG21 sing N N 302 ILE CG2 HG22 sing N N 303 ILE CG2 HG23 sing N N 304 ILE CD1 HD11 sing N N 305 ILE CD1 HD12 sing N N 306 ILE CD1 HD13 sing N N 307 ILE OXT HXT sing N N 308 LEU N CA sing N N 309 LEU N H sing N N 310 LEU N H2 sing N N 311 LEU CA C sing N N 312 LEU CA CB sing N N 313 LEU CA HA sing N N 314 LEU C O doub N N 315 LEU C OXT sing N N 316 LEU CB CG sing N N 317 LEU CB HB2 sing N N 318 LEU CB HB3 sing N N 319 LEU CG CD1 sing N N 320 LEU CG CD2 sing N N 321 LEU CG HG sing N N 322 LEU CD1 HD11 sing N N 323 LEU CD1 HD12 sing N N 324 LEU CD1 HD13 sing N N 325 LEU CD2 HD21 sing N N 326 LEU CD2 HD22 sing N N 327 LEU CD2 HD23 sing N N 328 LEU OXT HXT sing N N 329 LYS N CA sing N N 330 LYS N H sing N N 331 LYS N H2 sing N N 332 LYS CA C sing N N 333 LYS CA CB sing N N 334 LYS CA HA sing N N 335 LYS C O doub N N 336 LYS C OXT sing N N 337 LYS CB CG sing N N 338 LYS CB HB2 sing N N 339 LYS CB HB3 sing N N 340 LYS CG CD sing N N 341 LYS CG HG2 sing N N 342 LYS CG HG3 sing N N 343 LYS CD CE sing N N 344 LYS CD HD2 sing N N 345 LYS CD HD3 sing N N 346 LYS CE NZ sing N N 347 LYS CE HE2 sing N N 348 LYS CE HE3 sing N N 349 LYS NZ HZ1 sing N N 350 LYS NZ HZ2 sing N N 351 LYS NZ HZ3 sing N N 352 LYS OXT HXT sing N N 353 MET N CA sing N N 354 MET N H sing N N 355 MET N H2 sing N N 356 MET CA C sing N N 357 MET CA CB sing N N 358 MET CA HA sing N N 359 MET C O doub N N 360 MET C OXT sing N N 361 MET CB CG sing N N 362 MET CB HB2 sing N N 363 MET CB HB3 sing N N 364 MET CG SD sing N N 365 MET CG HG2 sing N N 366 MET CG HG3 sing N N 367 MET SD CE sing N N 368 MET CE HE1 sing N N 369 MET CE HE2 sing N N 370 MET CE HE3 sing N N 371 MET OXT HXT sing N N 372 PHE N CA sing N N 373 PHE N H sing N N 374 PHE N H2 sing N N 375 PHE CA C sing N N 376 PHE CA CB sing N N 377 PHE CA HA sing N N 378 PHE C O doub N N 379 PHE C OXT sing N N 380 PHE CB CG sing N N 381 PHE CB HB2 sing N N 382 PHE CB HB3 sing N N 383 PHE CG CD1 doub Y N 384 PHE CG CD2 sing Y N 385 PHE CD1 CE1 sing Y N 386 PHE CD1 HD1 sing N N 387 PHE CD2 CE2 doub Y N 388 PHE CD2 HD2 sing N N 389 PHE CE1 CZ doub Y N 390 PHE CE1 HE1 sing N N 391 PHE CE2 CZ sing Y N 392 PHE CE2 HE2 sing N N 393 PHE CZ HZ sing N N 394 PHE OXT HXT sing N N 395 PRO N CA sing N N 396 PRO N CD sing N N 397 PRO N H sing N N 398 PRO CA C sing N N 399 PRO CA CB sing N N 400 PRO CA HA sing N N 401 PRO C O doub N N 402 PRO C OXT sing N N 403 PRO CB CG sing N N 404 PRO CB HB2 sing N N 405 PRO CB HB3 sing N N 406 PRO CG CD sing N N 407 PRO CG HG2 sing N N 408 PRO CG HG3 sing N N 409 PRO CD HD2 sing N N 410 PRO CD HD3 sing N N 411 PRO OXT HXT sing N N 412 SER N CA sing N N 413 SER N H sing N N 414 SER N H2 sing N N 415 SER CA C sing N N 416 SER CA CB sing N N 417 SER CA HA sing N N 418 SER C O doub N N 419 SER C OXT sing N N 420 SER CB OG sing N N 421 SER CB HB2 sing N N 422 SER CB HB3 sing N N 423 SER OG HG sing N N 424 SER OXT HXT sing N N 425 THR N CA sing N N 426 THR N H sing N N 427 THR N H2 sing N N 428 THR CA C sing N N 429 THR CA CB sing N N 430 THR CA HA sing N N 431 THR C O doub N N 432 THR C OXT sing N N 433 THR CB OG1 sing N N 434 THR CB CG2 sing N N 435 THR CB HB sing N N 436 THR OG1 HG1 sing N N 437 THR CG2 HG21 sing N N 438 THR CG2 HG22 sing N N 439 THR CG2 HG23 sing N N 440 THR OXT HXT sing N N 441 TRP N CA sing N N 442 TRP N H sing N N 443 TRP N H2 sing N N 444 TRP CA C sing N N 445 TRP CA CB sing N N 446 TRP CA HA sing N N 447 TRP C O doub N N 448 TRP C OXT sing N N 449 TRP CB CG sing N N 450 TRP CB HB2 sing N N 451 TRP CB HB3 sing N N 452 TRP CG CD1 doub Y N 453 TRP CG CD2 sing Y N 454 TRP CD1 NE1 sing Y N 455 TRP CD1 HD1 sing N N 456 TRP CD2 CE2 doub Y N 457 TRP CD2 CE3 sing Y N 458 TRP NE1 CE2 sing Y N 459 TRP NE1 HE1 sing N N 460 TRP CE2 CZ2 sing Y N 461 TRP CE3 CZ3 doub Y N 462 TRP CE3 HE3 sing N N 463 TRP CZ2 CH2 doub Y N 464 TRP CZ2 HZ2 sing N N 465 TRP CZ3 CH2 sing Y N 466 TRP CZ3 HZ3 sing N N 467 TRP CH2 HH2 sing N N 468 TRP OXT HXT sing N N 469 TYR N CA sing N N 470 TYR N H sing N N 471 TYR N H2 sing N N 472 TYR CA C sing N N 473 TYR CA CB sing N N 474 TYR CA HA sing N N 475 TYR C O doub N N 476 TYR C OXT sing N N 477 TYR CB CG sing N N 478 TYR CB HB2 sing N N 479 TYR CB HB3 sing N N 480 TYR CG CD1 doub Y N 481 TYR CG CD2 sing Y N 482 TYR CD1 CE1 sing Y N 483 TYR CD1 HD1 sing N N 484 TYR CD2 CE2 doub Y N 485 TYR CD2 HD2 sing N N 486 TYR CE1 CZ doub Y N 487 TYR CE1 HE1 sing N N 488 TYR CE2 CZ sing Y N 489 TYR CE2 HE2 sing N N 490 TYR CZ OH sing N N 491 TYR OH HH sing N N 492 TYR OXT HXT sing N N 493 VAL N CA sing N N 494 VAL N H sing N N 495 VAL N H2 sing N N 496 VAL CA C sing N N 497 VAL CA CB sing N N 498 VAL CA HA sing N N 499 VAL C O doub N N 500 VAL C OXT sing N N 501 VAL CB CG1 sing N N 502 VAL CB CG2 sing N N 503 VAL CB HB sing N N 504 VAL CG1 HG11 sing N N 505 VAL CG1 HG12 sing N N 506 VAL CG1 HG13 sing N N 507 VAL CG2 HG21 sing N N 508 VAL CG2 HG22 sing N N 509 VAL CG2 HG23 sing N N 510 VAL OXT HXT sing N N 511 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3RMP 'double helix' 3RMP 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DA 2 1_555 D DT 14 1_555 1.005 0.027 0.643 8.282 -14.470 1.880 1 E_DA2:DT14_F E 2 ? F 14 ? 20 1 1 C DA 3 1_555 D DT 13 1_555 0.373 0.081 0.302 2.799 -22.945 -9.599 2 E_DA3:DT13_F E 3 ? F 13 ? 20 1 1 C DT 4 1_555 D DA 12 1_555 -0.068 0.051 0.217 -4.518 -20.108 5.985 3 E_DT4:DA12_F E 4 ? F 12 ? 20 1 1 C DG 5 1_555 D DC 11 1_555 -0.003 -0.160 -0.679 -9.320 -1.469 -0.285 4 E_DG5:DC11_F E 5 ? F 11 ? 19 1 1 C DA 6 1_555 D DT 10 1_555 0.211 -0.261 -0.450 0.071 -4.720 2.919 5 E_DA6:DT10_F E 6 ? F 10 ? 20 1 1 C DC 7 1_555 D DG 9 1_555 0.018 0.104 0.176 7.499 -16.227 2.657 6 E_DC7:DG9_F E 7 ? F 9 ? 19 1 1 C DC 8 1_555 D DG 8 1_555 0.354 -0.390 -0.631 3.178 -12.524 1.190 7 E_DC8:DG8_F E 8 ? F 8 ? 19 1 1 C DA 9 1_555 D DT 7 1_555 0.229 -0.183 -0.254 -4.027 -14.602 2.379 8 E_DA9:DT7_F E 9 ? F 7 ? 20 1 1 C DC 10 1_555 D DG 6 1_555 0.172 -0.102 -0.262 5.839 -1.648 -1.894 9 E_DC10:DG6_F E 10 ? F 6 ? 19 1 1 C DC 11 1_555 D DG 5 1_555 0.325 -0.119 -0.229 7.523 -13.132 5.283 10 E_DC11:DG5_F E 11 ? F 5 ? 19 1 1 C DA 12 1_555 D DT 4 1_555 0.056 -0.033 -0.078 9.432 -10.442 0.567 11 E_DA12:DT4_F E 12 ? F 4 ? 20 1 1 C DA 13 1_555 D DT 3 1_555 0.304 -0.330 -0.112 10.063 -11.042 -3.067 12 E_DA13:DT3_F E 13 ? F 3 ? 20 1 1 C DT 14 1_555 D DA 2 1_555 -0.508 -0.389 -0.062 13.828 -19.248 -3.726 13 E_DT14:DA2_F E 14 ? F 2 ? 20 1 1 E DA 2 1_555 F DT 14 1_555 0.213 -0.249 -0.749 -9.321 -15.811 -3.590 14 G_DA2:DT14_H G 2 ? H 14 ? 20 1 1 E DA 3 1_555 F DT 13 1_555 0.509 -0.013 -0.354 -7.921 -16.183 -0.110 15 G_DA3:DT13_H G 3 ? H 13 ? 20 1 1 E DT 4 1_555 F DA 12 1_555 0.142 -0.029 0.030 -5.268 -7.420 8.179 16 G_DT4:DA12_H G 4 ? H 12 ? 20 1 1 E DG 5 1_555 F DC 11 1_555 -0.280 -0.139 0.004 6.343 -13.866 2.418 17 G_DG5:DC11_H G 5 ? H 11 ? 19 1 1 E DA 6 1_555 F DT 10 1_555 0.104 -0.120 0.228 10.158 -9.257 3.710 18 G_DA6:DT10_H G 6 ? H 10 ? 20 1 1 E DC 7 1_555 F DG 9 1_555 -0.063 0.105 -0.444 20.332 -12.716 -0.047 19 G_DC7:DG9_H G 7 ? H 9 ? 19 1 1 E DC 8 1_555 F DG 8 1_555 0.045 -0.283 0.354 -6.877 -7.631 1.494 20 G_DC8:DG8_H G 8 ? H 8 ? 19 1 1 E DA 9 1_555 F DT 7 1_555 0.316 -0.128 0.170 10.262 -12.877 4.103 21 G_DA9:DT7_H G 9 ? H 7 ? 20 1 1 E DC 10 1_555 F DG 6 1_555 0.481 0.075 -0.351 16.739 -8.700 6.067 22 G_DC10:DG6_H G 10 ? H 6 ? 19 1 1 E DC 11 1_555 F DG 5 1_555 0.555 0.014 -0.652 21.883 -17.899 4.146 23 G_DC11:DG5_H G 11 ? H 5 ? 19 1 1 E DA 12 1_555 F DT 4 1_555 -0.403 -0.175 0.318 3.800 -18.337 5.635 24 G_DA12:DT4_H G 12 ? H 4 ? 20 1 1 E DA 13 1_555 F DT 3 1_555 -0.047 -0.120 0.087 -3.524 -16.301 2.968 25 G_DA13:DT3_H G 13 ? H 3 ? 20 1 1 E DT 14 1_555 F DA 2 1_555 -0.396 0.173 0.312 -3.886 -19.580 9.855 26 G_DT14:DA2_H G 14 ? H 2 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DA 2 1_555 D DT 14 1_555 C DA 3 1_555 D DT 13 1_555 -0.129 -0.879 3.316 0.708 1.768 31.794 -1.926 0.366 3.260 3.223 -1.291 31.849 1 EE_DA2DA3:DT13DT14_FF E 2 ? F 14 ? E 3 ? F 13 ? 1 C DA 3 1_555 D DT 13 1_555 C DT 4 1_555 D DA 12 1_555 1.035 -0.494 3.349 3.532 -0.813 33.526 -0.714 -1.186 3.447 -1.404 -6.101 33.716 2 EE_DA3DT4:DA12DT13_FF E 3 ? F 13 ? E 4 ? F 12 ? 1 C DT 4 1_555 D DA 12 1_555 C DG 5 1_555 D DC 11 1_555 -0.152 0.630 3.488 3.220 6.180 38.446 0.138 0.647 3.520 9.292 -4.842 39.049 3 EE_DT4DG5:DC11DA12_FF E 4 ? F 12 ? E 5 ? F 11 ? 1 C DG 5 1_555 D DC 11 1_555 C DA 6 1_555 D DT 10 1_555 0.209 -0.441 3.033 -2.994 3.427 31.217 -1.397 -0.895 2.937 6.326 5.527 31.539 4 EE_DG5DA6:DT10DC11_FF E 5 ? F 11 ? E 6 ? F 10 ? 1 C DA 6 1_555 D DT 10 1_555 C DC 7 1_555 D DG 9 1_555 0.990 -1.250 3.152 -5.759 0.587 28.349 -2.623 -3.170 2.873 1.183 11.606 28.922 5 EE_DA6DC7:DG9DT10_FF E 6 ? F 10 ? E 7 ? F 9 ? 1 C DC 7 1_555 D DG 9 1_555 C DC 8 1_555 D DG 8 1_555 -1.149 -1.110 3.369 5.139 3.897 32.974 -2.550 2.818 3.014 6.785 -8.947 33.581 6 EE_DC7DC8:DG8DG9_FF E 7 ? F 9 ? E 8 ? F 8 ? 1 C DC 8 1_555 D DG 8 1_555 C DA 9 1_555 D DT 7 1_555 -0.658 -0.747 3.663 -3.241 15.015 23.050 -5.473 0.533 2.739 33.252 7.178 27.642 7 EE_DC8DA9:DT7DG8_FF E 8 ? F 8 ? E 9 ? F 7 ? 1 C DA 9 1_555 D DT 7 1_555 C DC 10 1_555 D DG 6 1_555 0.068 -0.616 3.129 1.871 14.085 29.042 -3.409 0.182 2.565 26.200 -3.480 32.264 8 EE_DA9DC10:DG6DT7_FF E 9 ? F 7 ? E 10 ? F 6 ? 1 C DC 10 1_555 D DG 6 1_555 C DC 11 1_555 D DG 5 1_555 1.044 -0.418 3.263 4.879 8.125 30.815 -2.213 -1.005 3.177 14.856 -8.920 32.206 9 EE_DC10DC11:DG5DG6_FF E 10 ? F 6 ? E 11 ? F 5 ? 1 C DC 11 1_555 D DG 5 1_555 C DA 12 1_555 D DT 4 1_555 -0.673 0.516 3.420 -0.655 6.305 34.368 -0.152 1.016 3.470 10.558 1.098 34.930 10 EE_DC11DA12:DT4DG5_FF E 11 ? F 5 ? E 12 ? F 4 ? 1 C DA 12 1_555 D DT 4 1_555 C DA 13 1_555 D DT 3 1_555 0.146 0.176 3.231 0.467 3.138 35.835 -0.158 -0.170 3.236 5.087 -0.757 35.970 11 EE_DA12DA13:DT3DT4_FF E 12 ? F 4 ? E 13 ? F 3 ? 1 C DA 13 1_555 D DT 3 1_555 C DT 14 1_555 D DA 2 1_555 0.385 -0.519 3.223 -0.135 -2.893 30.979 -0.418 -0.744 3.255 -5.402 0.252 31.111 12 EE_DA13DT14:DA2DT3_FF E 13 ? F 3 ? E 14 ? F 2 ? 1 E DA 2 1_555 F DT 14 1_555 E DA 3 1_555 F DT 13 1_555 0.099 0.173 3.155 -4.877 10.164 35.713 -1.030 -0.779 3.051 16.086 7.718 37.395 13 GG_DA2DA3:DT13DT14_HH G 2 ? H 14 ? G 3 ? H 13 ? 1 E DA 3 1_555 F DT 13 1_555 E DT 4 1_555 F DA 12 1_555 0.380 -0.325 3.254 -0.689 -4.174 31.605 0.168 -0.816 3.260 -7.620 1.257 31.879 14 GG_DA3DT4:DA12DT13_HH G 3 ? H 13 ? G 4 ? H 12 ? 1 E DT 4 1_555 F DA 12 1_555 E DG 5 1_555 F DC 11 1_555 0.109 0.883 3.083 -0.137 10.427 34.960 -0.011 -0.193 3.207 16.897 0.222 36.435 15 GG_DT4DG5:DC11DA12_HH G 4 ? H 12 ? G 5 ? H 11 ? 1 E DG 5 1_555 F DC 11 1_555 E DA 6 1_555 F DT 10 1_555 0.357 -0.489 3.203 -1.608 3.284 32.342 -1.428 -0.909 3.118 5.871 2.875 32.542 16 GG_DG5DA6:DT10DC11_HH G 5 ? H 11 ? G 6 ? H 10 ? 1 E DA 6 1_555 F DT 10 1_555 E DC 7 1_555 F DG 9 1_555 0.951 -1.156 3.109 3.425 5.798 23.935 -4.310 -1.251 2.860 13.639 -8.057 24.851 17 GG_DA6DC7:DG9DT10_HH G 6 ? H 10 ? G 7 ? H 9 ? 1 E DC 7 1_555 F DG 9 1_555 E DC 8 1_555 F DG 8 1_555 -1.046 -1.244 3.976 -8.920 2.062 35.271 -2.349 0.130 4.036 3.334 14.424 36.403 18 GG_DC7DC8:DG8DG9_HH G 7 ? H 9 ? G 8 ? H 8 ? 1 E DC 8 1_555 F DG 8 1_555 E DA 9 1_555 F DT 7 1_555 -0.928 -0.987 2.780 1.496 17.124 27.128 -4.143 1.888 1.803 32.675 -2.855 32.029 19 GG_DC8DA9:DT7DG8_HH G 8 ? H 8 ? G 9 ? H 7 ? 1 E DA 9 1_555 F DT 7 1_555 E DC 10 1_555 F DG 6 1_555 0.434 -0.405 3.127 5.734 2.088 31.640 -1.089 0.204 3.123 3.786 -10.395 32.209 20 GG_DA9DC10:DG6DT7_HH G 9 ? H 7 ? G 10 ? H 6 ? 1 E DC 10 1_555 F DG 6 1_555 E DC 11 1_555 F DG 5 1_555 0.802 -0.086 3.120 7.127 9.796 27.780 -2.112 -0.119 3.028 19.284 -14.030 30.259 21 GG_DC10DC11:DG5DG6_HH G 10 ? H 6 ? G 11 ? H 5 ? 1 E DC 11 1_555 F DG 5 1_555 E DA 12 1_555 F DT 4 1_555 -0.453 0.196 3.808 -5.532 6.511 35.932 -0.731 -0.169 3.811 10.374 8.815 36.901 22 GG_DC11DA12:DT4DG5_HH G 11 ? H 5 ? G 12 ? H 4 ? 1 E DA 12 1_555 F DT 4 1_555 E DA 13 1_555 F DT 3 1_555 -0.165 -0.215 3.358 -1.370 -2.180 39.095 -0.053 0.077 3.369 -3.254 2.044 39.176 23 GG_DA12DA13:DT3DT4_HH G 12 ? H 4 ? G 13 ? H 3 ? 1 E DA 13 1_555 F DT 3 1_555 E DT 14 1_555 F DA 2 1_555 0.060 -0.696 3.215 -1.077 -3.216 33.160 -0.682 -0.283 3.263 -5.617 1.881 33.328 24 GG_DA13DT14:DA2DT3_HH G 13 ? H 3 ? G 14 ? H 2 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3JTZ _pdbx_initial_refinement_model.details 'PDB ENTRY 3JTZ' #