HEADER PROTEIN BINDING 21-APR-11 3RMR TITLE CRYSTAL STRUCTURE OF HYALOPERONOSPORA ARABIDOPSIDIS ATR1 EFFECTOR TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: AVIRULENCE PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: ATR1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYALOPERONOSPORA PARASITICA; SOURCE 3 ORGANISM_TAXID: 123356; SOURCE 4 GENE: ATR1, ATR1NDWSB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA DE3 KEYWDS EFFECTOR, RPP1-RECOGNIZED, ALPHA-HELICAL, W-MOTIF, SEAHORSE, KEYWDS 2 VIRULENCE, RPP1, R-PROTEIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.CHOU,K.V.KRASILEVA,J.M.HOLTON,B.J.STASKAWICZ,T.ALBER REVDAT 3 17-JUL-19 3RMR 1 REMARK LINK REVDAT 2 08-NOV-17 3RMR 1 REMARK REVDAT 1 20-JUL-11 3RMR 0 JRNL AUTH S.CHOU,K.V.KRASILEVA,J.M.HOLTON,A.STEINBRENNER,T.ALBER, JRNL AUTH 2 B.J.STASKAWICZ JRNL TITL THE HYALOPERONOSPORA ARABIDOPSIDIS ATR1 EFFECTOR HAS JRNL TITL 2 DISTRIBUTED RECOGNITION SURFACES AND A STRUCTURAL SUBDOMAIN JRNL TITL 3 CONSERVED ACROSS OOMYCETE SPECIES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 55573 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 62.3721 - 6.2413 0.99 3113 167 0.2202 0.2200 REMARK 3 2 6.2413 - 4.9546 0.99 2932 152 0.2136 0.2399 REMARK 3 3 4.9546 - 4.3285 1.00 2858 169 0.1821 0.1993 REMARK 3 4 4.3285 - 3.9328 1.00 2856 148 0.1759 0.2258 REMARK 3 5 3.9328 - 3.6509 0.99 2812 156 0.1891 0.2301 REMARK 3 6 3.6509 - 3.4357 0.99 2799 137 0.2172 0.2487 REMARK 3 7 3.4357 - 3.2636 0.99 2776 151 0.2272 0.2688 REMARK 3 8 3.2636 - 3.1216 0.99 2771 145 0.2364 0.3107 REMARK 3 9 3.1216 - 3.0014 0.97 2741 128 0.2417 0.2809 REMARK 3 10 3.0014 - 2.8978 0.97 2726 130 0.2355 0.2875 REMARK 3 11 2.8978 - 2.8072 0.97 2720 131 0.2419 0.2713 REMARK 3 12 2.8072 - 2.7270 0.96 2660 139 0.2461 0.3174 REMARK 3 13 2.7270 - 2.6552 0.95 2632 150 0.2566 0.3507 REMARK 3 14 2.6552 - 2.5904 0.94 2602 160 0.2666 0.3268 REMARK 3 15 2.5904 - 2.5315 0.93 2576 150 0.2763 0.3315 REMARK 3 16 2.5315 - 2.4776 0.91 2535 138 0.2914 0.3779 REMARK 3 17 2.4776 - 2.4281 0.90 2515 109 0.3031 0.4171 REMARK 3 18 2.4281 - 2.3823 0.84 2328 135 0.3117 0.3338 REMARK 3 19 2.3823 - 2.3397 0.74 2019 102 0.3225 0.3517 REMARK 3 20 2.3397 - 2.3001 0.66 1806 99 0.3123 0.3343 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 47.45 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.12630 REMARK 3 B22 (A**2) : -2.12630 REMARK 3 B33 (A**2) : 4.25270 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 6007 REMARK 3 ANGLE : 1.022 7688 REMARK 3 CHIRALITY : 0.072 852 REMARK 3 PLANARITY : 0.004 992 REMARK 3 DIHEDRAL : 16.232 2024 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RMR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000065123. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0722, 1.0631, 1.11587 REMARK 200 MONOCHROMATOR : KHOZU DOUBLE FLAT CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ELVES, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : ELVES, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57939 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.268 REMARK 200 RESOLUTION RANGE LOW (A) : 103.431 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 15.50 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 35.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 15.60 REMARK 200 R MERGE FOR SHELL (I) : 0.72900 REMARK 200 R SYM FOR SHELL (I) : 0.72900 REMARK 200 FOR SHELL : 4.375 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHENIX AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTAL GROWTH IN 1.6 M MAGNESIUM REMARK 280 SULFATE, 0.1 M MES, PH 6.5. 1:20000 SEEDING IN 1.2 M MAGNESIUM REMARK 280 SULFATE, 0.01% ACETONITRILE, 0.1 M MES, PH 5.0. DEHYDRATION IN REMARK 280 1.5 M MAGNESIUM SULFATE, 0.1 M MES, PH 5.0 FOR 2 HOURS, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.19067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 208.38133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 156.28600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 260.47667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.09533 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 104.19067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 208.38133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 260.47667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 156.28600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 52.09533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 61650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -179.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -59.71600 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 103.43115 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 52.09533 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 0.500000 0.866025 0.000000 -59.71600 REMARK 350 BIOMT2 1 0.866025 -0.500000 0.000000 103.43115 REMARK 350 BIOMT3 1 0.000000 0.000000 -1.000000 52.09533 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 337 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 346 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 367 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 52 REMARK 465 GLN A 53 REMARK 465 THR A 54 REMARK 465 ALA A 55 REMARK 465 LEU A 56 REMARK 465 ASP A 57 REMARK 465 ASP A 58 REMARK 465 ASP A 59 REMARK 465 GLU A 60 REMARK 465 GLU A 61 REMARK 465 ARG A 62 REMARK 465 SER A 279 REMARK 465 GLU A 280 REMARK 465 ASP A 281 REMARK 465 TYR A 282 REMARK 465 ALA A 283 REMARK 465 ILE A 284 REMARK 465 ARG A 285 REMARK 465 GLY A 286 REMARK 465 ALA A 287 REMARK 465 ARG A 288 REMARK 465 ASN A 289 REMARK 465 HIS A 290 REMARK 465 VAL A 312 REMARK 465 ALA B 52 REMARK 465 GLN B 53 REMARK 465 THR B 54 REMARK 465 ALA B 55 REMARK 465 LEU B 56 REMARK 465 ASP B 57 REMARK 465 ASP B 58 REMARK 465 ASP B 59 REMARK 465 GLU B 60 REMARK 465 GLU B 61 REMARK 465 ARG B 62 REMARK 465 TRP B 63 REMARK 465 PRO B 64 REMARK 465 PHE B 65 REMARK 465 GLY B 66 REMARK 465 PRO B 67 REMARK 465 VAL B 83 REMARK 465 SER B 84 REMARK 465 LEU B 85 REMARK 465 ASP B 281 REMARK 465 TYR B 282 REMARK 465 ALA B 283 REMARK 465 ILE B 284 REMARK 465 ARG B 285 REMARK 465 GLY B 286 REMARK 465 ALA B 287 REMARK 465 ARG B 288 REMARK 465 ASN B 289 REMARK 465 VAL B 312 REMARK 465 ALA C 52 REMARK 465 GLN C 53 REMARK 465 THR C 54 REMARK 465 ALA C 55 REMARK 465 LEU C 56 REMARK 465 ASP C 57 REMARK 465 ASP C 58 REMARK 465 ASP C 59 REMARK 465 GLU C 60 REMARK 465 GLU C 61 REMARK 465 ARG C 62 REMARK 465 TRP C 63 REMARK 465 PRO C 64 REMARK 465 PHE C 65 REMARK 465 GLY C 66 REMARK 465 LEU C 85 REMARK 465 ASN C 86 REMARK 465 ALA C 283 REMARK 465 ILE C 284 REMARK 465 ARG C 285 REMARK 465 GLY C 286 REMARK 465 ALA C 287 REMARK 465 ARG C 288 REMARK 465 ASN C 289 REMARK 465 VAL C 312 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 63 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 63 CZ3 CH2 REMARK 470 PRO A 64 CG CD REMARK 470 GLU A 75 CG CD OE1 OE2 REMARK 470 ASP A 87 CG OD1 OD2 REMARK 470 GLU A 249 CG CD OE1 OE2 REMARK 470 LYS A 262 CG CD CE NZ REMARK 470 ARG A 271 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 292 CG CD OE1 OE2 REMARK 470 LYS A 293 CG CD CE NZ REMARK 470 LEU A 296 CG CD1 CD2 REMARK 470 GLU A 300 CG CD OE1 OE2 REMARK 470 GLU B 75 CG CD OE1 OE2 REMARK 470 ARG B 82 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 86 CG OD1 ND2 REMARK 470 GLU B 88 CG CD OE1 OE2 REMARK 470 LYS B 92 CG CD CE NZ REMARK 470 ARG B 145 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 239 CG CD OE1 OE2 REMARK 470 PRO B 241 CG CD REMARK 470 ARG B 246 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 261 CG CD OE1 NE2 REMARK 470 LYS B 262 CG CD CE NZ REMARK 470 ARG B 271 CG CD NE CZ NH1 NH2 REMARK 470 SER B 278 OG REMARK 470 GLU B 279 CG CD OE1 OE2 REMARK 470 HIS B 290 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 292 CG CD OE1 OE2 REMARK 470 LYS B 293 CG CD CE NZ REMARK 470 LEU B 296 CG CD1 CD2 REMARK 470 GLU B 300 CG CD OE1 OE2 REMARK 470 SER B 311 OG REMARK 470 PRO C 67 CG CD REMARK 470 ARG C 82 CG CD NE CZ NH1 NH2 REMARK 470 VAL C 83 CG1 CG2 REMARK 470 SER C 84 OG REMARK 470 ASP C 87 CG OD1 OD2 REMARK 470 GLU C 88 CG CD OE1 OE2 REMARK 470 LYS C 92 CG CD CE NZ REMARK 470 ARG C 246 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 261 CG CD OE1 NE2 REMARK 470 GLU C 279 CG CD OE1 OE2 REMARK 470 GLU C 300 CG CD OE1 OE2 REMARK 470 SER C 311 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 350 O HOH C 352 1.83 REMARK 500 O HOH C 324 O HOH C 351 1.90 REMARK 500 O GLU B 279 O HOH B 383 2.00 REMARK 500 OD2 ASP B 124 O HOH B 401 2.06 REMARK 500 OG1 THR A 137 O HOH A 372 2.07 REMARK 500 O HOH B 374 O HOH B 375 2.12 REMARK 500 OH TYR C 222 O HOH C 362 2.12 REMARK 500 O HOH A 347 O HOH A 404 2.13 REMARK 500 O HOH A 364 O HOH A 368 2.13 REMARK 500 O HOH A 318 O HOH A 324 2.15 REMARK 500 O HOH C 333 O HOH C 349 2.17 REMARK 500 NE2 GLN C 277 N LEU C 294 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 369 O HOH C 374 12565 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 64 N - CA - CB ANGL. DEV. = 7.5 DEGREES REMARK 500 PRO C 67 N - CA - CB ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 84 -103.49 69.86 REMARK 500 LEU A 85 -130.27 52.24 REMARK 500 ALA A 118 80.27 -154.73 REMARK 500 SER A 139 160.68 70.24 REMARK 500 GLU A 210 -1.41 82.32 REMARK 500 TYR A 310 69.22 -101.36 REMARK 500 ASP B 87 -70.82 63.18 REMARK 500 ALA B 118 83.76 -162.00 REMARK 500 SER B 139 165.26 80.69 REMARK 500 GLU B 210 2.18 82.92 REMARK 500 ASP B 242 55.15 -93.37 REMARK 500 GLN B 263 60.15 60.42 REMARK 500 TYR B 276 4.66 -64.58 REMARK 500 SER B 278 149.17 -177.34 REMARK 500 SER C 68 -177.26 -67.84 REMARK 500 ALA C 118 80.27 -156.18 REMARK 500 SER C 139 160.58 79.36 REMARK 500 GLU C 210 -4.16 82.03 REMARK 500 SER C 295 155.97 -47.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 85 ASN A 86 -126.34 REMARK 500 REMARK 500 REMARK: NULL DBREF 3RMR A 52 312 UNP Q4VKJ6 Q4VKJ6_9STRA 52 311 DBREF 3RMR B 52 312 UNP Q4VKJ6 Q4VKJ6_9STRA 52 311 DBREF 3RMR C 52 312 UNP Q4VKJ6 Q4VKJ6_9STRA 52 311 SEQRES 1 A 260 ALA GLN THR ALA LEU ASP ASP ASP GLU GLU ARG TRP PRO SEQRES 2 A 260 PHE GLY PRO SER ALA VAL GLU ALA LEU ILE GLU THR ILE SEQRES 3 A 260 ASP ARG HIS GLY ARG VAL SER LEU ASN ASP GLU ALA LYS SEQRES 4 A 260 MSE LYS LYS VAL VAL ARG THR TRP LYS LYS LEU ILE GLU SEQRES 5 A 260 ARG ASP ASP LEU ILE GLY GLU ILE GLY LYS HIS TYR PHE SEQRES 6 A 260 GLU ALA PRO GLY PRO LEU HIS ASP THR TYR ASP GLU ALA SEQRES 7 A 260 LEU ALA THR ARG LEU VAL THR THR TYR SER ASP ARG GLY SEQRES 8 A 260 VAL ALA ARG ALA ILE LEU HIS THR ARG PRO SER ASP PRO SEQRES 9 A 260 LEU SER LYS LYS ALA GLY GLN ALA HIS ARG LEU GLU GLU SEQRES 10 A 260 ALA VAL ALA SER LEU TRP LYS GLY ARG GLY TYR THR SER SEQRES 11 A 260 ASP ASN VAL VAL SER SER ILE ALA THR GLY HIS ASP VAL SEQRES 12 A 260 ASP PHE PHE ALA PRO THR ALA PHE THR PHE LEU VAL LYS SEQRES 13 A 260 CYS VAL GLU SER GLU ASP ASP ALA ASN ASN ALA ILE PHE SEQRES 14 A 260 GLU TYR PHE GLY SER ASN PRO SER ARG TYR PHE SER ALA SEQRES 15 A 260 VAL LEU HIS ALA MSE GLU LYS PRO ASP ALA ASP SER ARG SEQRES 16 A 260 VAL LEU GLU SER SER LYS LYS TRP MSE PHE GLN CYS TYR SEQRES 17 A 260 ALA GLN LYS GLN PHE PRO THR PRO VAL PHE GLU ARG THR SEQRES 18 A 260 LEU ALA ALA TYR GLN SER GLU ASP TYR ALA ILE ARG GLY SEQRES 19 A 260 ALA ARG ASN HIS TYR GLU LYS LEU SER LEU SER GLN ILE SEQRES 20 A 260 GLU GLU LEU VAL GLU GLU TYR SER ARG ILE TYR SER VAL SEQRES 1 B 260 ALA GLN THR ALA LEU ASP ASP ASP GLU GLU ARG TRP PRO SEQRES 2 B 260 PHE GLY PRO SER ALA VAL GLU ALA LEU ILE GLU THR ILE SEQRES 3 B 260 ASP ARG HIS GLY ARG VAL SER LEU ASN ASP GLU ALA LYS SEQRES 4 B 260 MSE LYS LYS VAL VAL ARG THR TRP LYS LYS LEU ILE GLU SEQRES 5 B 260 ARG ASP ASP LEU ILE GLY GLU ILE GLY LYS HIS TYR PHE SEQRES 6 B 260 GLU ALA PRO GLY PRO LEU HIS ASP THR TYR ASP GLU ALA SEQRES 7 B 260 LEU ALA THR ARG LEU VAL THR THR TYR SER ASP ARG GLY SEQRES 8 B 260 VAL ALA ARG ALA ILE LEU HIS THR ARG PRO SER ASP PRO SEQRES 9 B 260 LEU SER LYS LYS ALA GLY GLN ALA HIS ARG LEU GLU GLU SEQRES 10 B 260 ALA VAL ALA SER LEU TRP LYS GLY ARG GLY TYR THR SER SEQRES 11 B 260 ASP ASN VAL VAL SER SER ILE ALA THR GLY HIS ASP VAL SEQRES 12 B 260 ASP PHE PHE ALA PRO THR ALA PHE THR PHE LEU VAL LYS SEQRES 13 B 260 CYS VAL GLU SER GLU ASP ASP ALA ASN ASN ALA ILE PHE SEQRES 14 B 260 GLU TYR PHE GLY SER ASN PRO SER ARG TYR PHE SER ALA SEQRES 15 B 260 VAL LEU HIS ALA MSE GLU LYS PRO ASP ALA ASP SER ARG SEQRES 16 B 260 VAL LEU GLU SER SER LYS LYS TRP MSE PHE GLN CYS TYR SEQRES 17 B 260 ALA GLN LYS GLN PHE PRO THR PRO VAL PHE GLU ARG THR SEQRES 18 B 260 LEU ALA ALA TYR GLN SER GLU ASP TYR ALA ILE ARG GLY SEQRES 19 B 260 ALA ARG ASN HIS TYR GLU LYS LEU SER LEU SER GLN ILE SEQRES 20 B 260 GLU GLU LEU VAL GLU GLU TYR SER ARG ILE TYR SER VAL SEQRES 1 C 260 ALA GLN THR ALA LEU ASP ASP ASP GLU GLU ARG TRP PRO SEQRES 2 C 260 PHE GLY PRO SER ALA VAL GLU ALA LEU ILE GLU THR ILE SEQRES 3 C 260 ASP ARG HIS GLY ARG VAL SER LEU ASN ASP GLU ALA LYS SEQRES 4 C 260 MSE LYS LYS VAL VAL ARG THR TRP LYS LYS LEU ILE GLU SEQRES 5 C 260 ARG ASP ASP LEU ILE GLY GLU ILE GLY LYS HIS TYR PHE SEQRES 6 C 260 GLU ALA PRO GLY PRO LEU HIS ASP THR TYR ASP GLU ALA SEQRES 7 C 260 LEU ALA THR ARG LEU VAL THR THR TYR SER ASP ARG GLY SEQRES 8 C 260 VAL ALA ARG ALA ILE LEU HIS THR ARG PRO SER ASP PRO SEQRES 9 C 260 LEU SER LYS LYS ALA GLY GLN ALA HIS ARG LEU GLU GLU SEQRES 10 C 260 ALA VAL ALA SER LEU TRP LYS GLY ARG GLY TYR THR SER SEQRES 11 C 260 ASP ASN VAL VAL SER SER ILE ALA THR GLY HIS ASP VAL SEQRES 12 C 260 ASP PHE PHE ALA PRO THR ALA PHE THR PHE LEU VAL LYS SEQRES 13 C 260 CYS VAL GLU SER GLU ASP ASP ALA ASN ASN ALA ILE PHE SEQRES 14 C 260 GLU TYR PHE GLY SER ASN PRO SER ARG TYR PHE SER ALA SEQRES 15 C 260 VAL LEU HIS ALA MSE GLU LYS PRO ASP ALA ASP SER ARG SEQRES 16 C 260 VAL LEU GLU SER SER LYS LYS TRP MSE PHE GLN CYS TYR SEQRES 17 C 260 ALA GLN LYS GLN PHE PRO THR PRO VAL PHE GLU ARG THR SEQRES 18 C 260 LEU ALA ALA TYR GLN SER GLU ASP TYR ALA ILE ARG GLY SEQRES 19 C 260 ALA ARG ASN HIS TYR GLU LYS LEU SER LEU SER GLN ILE SEQRES 20 C 260 GLU GLU LEU VAL GLU GLU TYR SER ARG ILE TYR SER VAL MODRES 3RMR MSE A 91 MET SELENOMETHIONINE MODRES 3RMR MSE A 238 MET SELENOMETHIONINE MODRES 3RMR MSE A 255 MET SELENOMETHIONINE MODRES 3RMR MSE B 91 MET SELENOMETHIONINE MODRES 3RMR MSE B 238 MET SELENOMETHIONINE MODRES 3RMR MSE B 255 MET SELENOMETHIONINE MODRES 3RMR MSE C 91 MET SELENOMETHIONINE MODRES 3RMR MSE C 238 MET SELENOMETHIONINE MODRES 3RMR MSE C 255 MET SELENOMETHIONINE HET MSE A 91 8 HET MSE A 238 8 HET MSE A 255 8 HET MSE B 91 8 HET MSE B 238 8 HET MSE B 255 8 HET MSE C 91 8 HET MSE C 238 8 HET MSE C 255 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 4 HOH *365(H2 O) HELIX 1 1 SER A 68 VAL A 83 1 16 HELIX 2 2 ASN A 86 ARG A 104 1 19 HELIX 3 3 LEU A 107 ALA A 118 1 12 HELIX 4 4 TYR A 126 ARG A 151 1 26 HELIX 5 5 LYS A 159 GLY A 178 1 20 HELIX 6 6 THR A 180 ALA A 189 1 10 HELIX 7 7 HIS A 192 PHE A 197 5 6 HELIX 8 8 ALA A 198 GLU A 210 1 13 HELIX 9 9 SER A 211 PHE A 223 1 13 HELIX 10 10 ASN A 226 LYS A 240 1 15 HELIX 11 11 ASP A 244 LYS A 262 1 19 HELIX 12 12 PRO A 265 TYR A 276 1 12 HELIX 13 13 SER A 295 TYR A 310 1 16 HELIX 14 14 SER B 68 ARG B 82 1 15 HELIX 15 15 ASP B 87 ARG B 104 1 18 HELIX 16 16 ASP B 106 ALA B 118 1 13 HELIX 17 17 TYR B 126 ARG B 151 1 26 HELIX 18 18 LYS B 159 ARG B 177 1 19 HELIX 19 19 THR B 180 ALA B 189 1 10 HELIX 20 20 HIS B 192 PHE B 197 5 6 HELIX 21 21 ALA B 198 GLU B 210 1 13 HELIX 22 22 SER B 211 PHE B 223 1 13 HELIX 23 23 ASN B 226 GLU B 239 1 14 HELIX 24 24 ASP B 244 LYS B 262 1 19 HELIX 25 25 PRO B 265 TYR B 276 1 12 HELIX 26 26 SER B 295 TYR B 310 1 16 HELIX 27 27 SER C 68 ARG C 82 1 15 HELIX 28 28 ASP C 87 ARG C 104 1 18 HELIX 29 29 ASP C 106 ALA C 118 1 13 HELIX 30 30 TYR C 126 ARG C 151 1 26 HELIX 31 31 LYS C 159 GLY C 178 1 20 HELIX 32 32 THR C 180 ALA C 189 1 10 HELIX 33 33 HIS C 192 PHE C 197 5 6 HELIX 34 34 ALA C 198 GLU C 210 1 13 HELIX 35 35 SER C 211 PHE C 223 1 13 HELIX 36 36 ASN C 226 GLU C 239 1 14 HELIX 37 37 ASP C 244 LYS C 262 1 19 HELIX 38 38 PRO C 265 GLN C 277 1 13 HELIX 39 39 SER C 295 TYR C 310 1 16 LINK C LYS A 90 N MSE A 91 1555 1555 1.34 LINK C MSE A 91 N LYS A 92 1555 1555 1.33 LINK C ALA A 237 N MSE A 238 1555 1555 1.33 LINK C MSE A 238 N GLU A 239 1555 1555 1.34 LINK C TRP A 254 N MSE A 255 1555 1555 1.33 LINK C MSE A 255 N PHE A 256 1555 1555 1.34 LINK C LYS B 90 N MSE B 91 1555 1555 1.34 LINK C ALA B 237 N MSE B 238 1555 1555 1.33 LINK C TRP B 254 N MSE B 255 1555 1555 1.33 LINK C MSE B 255 N PHE B 256 1555 1555 1.34 LINK C LYS C 90 N MSE C 91 1555 1555 1.33 LINK C ALA C 237 N MSE C 238 1555 1555 1.33 LINK C MSE C 238 N GLU C 239 1555 1555 1.33 LINK C TRP C 254 N MSE C 255 1555 1555 1.33 LINK C MSE C 255 N PHE C 256 1555 1555 1.33 LINK C MSE B 91 N LYS B 92 1555 1555 1.33 LINK C MSE B 238 N GLU B 239 1555 1555 1.32 LINK C MSE C 91 N LYS C 92 1555 1555 1.33 CISPEP 1 SER B 278 GLU B 279 0 -8.24 CRYST1 119.432 119.432 312.572 90.00 90.00 120.00 P 61 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008373 0.004834 0.000000 0.00000 SCALE2 0.000000 0.009668 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003199 0.00000