HEADER OXIDOREDUCTASE 22-APR-11 3RNF TITLE STRUCTURE OF THE TOLUENE/O-XYLENE MONOOXYGENASE HYDROXYLASE TITLE 2 T201S/V271A DOUBLE MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLUENE O-XYLENE MONOOXYGENASE COMPONENT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TOLUENE/O-XYLENE MONOOXYGENASE HYDROXYLASE ALPHA SUBUNIT; COMPND 5 EC: 1.14.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TOLUENE O-XYLENE MONOOXYGENASE COMPONENT; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: TOLUENE/O-XYLENE MONOOXYGENASE HYDROXYLASE BETA SUBUNIT; COMPND 12 EC: 1.14.-.-; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: TOLUENE O-XYLENE MONOOXYGENASE COMPONENT; COMPND 16 CHAIN: C; COMPND 17 SYNONYM: TOLUENE/O-XYLENE MONOOXYGENASE HYDROXYLASE GAMMA SUBUNIT; COMPND 18 EC: 1.14.-.-; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP. OX1; SOURCE 3 ORGANISM_TAXID: 320855; SOURCE 4 GENE: TOUA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP. OX1; SOURCE 9 ORGANISM_TAXID: 320855; SOURCE 10 GENE: TOUE; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP. OX1; SOURCE 15 ORGANISM_TAXID: 320855; SOURCE 16 GENE: TOUB; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TOLUENE, HYDROXYLASE, FOUR-HELIX BUNDLE, DIIRON, OXYGEN PATHWAY, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.GUCINSKI,W.J.SONG,S.J.LIPPARD,M.H.SAZINSKY REVDAT 5 13-SEP-23 3RNF 1 REMARK SEQADV LINK REVDAT 4 23-AUG-17 3RNF 1 REMARK REVDAT 3 21-SEP-11 3RNF 1 JRNL REVDAT 2 07-SEP-11 3RNF 1 JRNL REVDAT 1 17-AUG-11 3RNF 0 JRNL AUTH W.J.SONG,G.GUCINSKI,M.H.SAZINSKY,S.J.LIPPARD JRNL TITL TRACKING A DEFINED ROUTE FOR O2 MIGRATION IN A JRNL TITL 2 DIOXYGEN-ACTIVATING DIIRON ENZYME. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 14795 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21859951 JRNL DOI 10.1073/PNAS.1106514108 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 63335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3372 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4610 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 262 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7353 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 548 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.16000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.180 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7581 ; 0.024 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10291 ; 1.816 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 896 ; 6.100 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 398 ;34.754 ;23.869 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1242 ;15.295 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 55 ;20.620 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1055 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5926 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4487 ; 1.045 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7214 ; 1.905 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3094 ; 3.456 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3077 ; 5.259 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3RNF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000065146. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM, MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66756 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 45.835 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31700 REMARK 200 FOR SHELL : 6.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2INC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 2.1 MM AMMONIUM SULFATE, REMARK 280 2% PEG400, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.79000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.58000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.58000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.79000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -22.79000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 493 REMARK 465 LYS A 494 REMARK 465 THR A 495 REMARK 465 ASN A 496 REMARK 465 ALA A 497 REMARK 465 ALA A 498 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 GLN B 4 REMARK 465 GLN B 5 REMARK 465 PRO B 6 REMARK 465 GLU B 7 REMARK 465 MET C 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 19 NH2 ARG B 203 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 107 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 15 73.38 -100.26 REMARK 500 SER A 152 156.66 179.08 REMARK 500 PHE A 200 -51.73 -129.92 REMARK 500 TYR A 279 -34.13 -139.43 REMARK 500 GLU A 326 -53.83 -129.17 REMARK 500 THR A 368 -84.53 -110.43 REMARK 500 MET A 399 -65.98 -93.02 REMARK 500 HIS A 406 -166.87 -175.29 REMARK 500 ASN A 413 36.85 -148.83 REMARK 500 ASP A 440 60.60 -152.54 REMARK 500 ARG B 22 -55.93 75.57 REMARK 500 ARG B 44 75.76 -156.85 REMARK 500 CYS B 62 -65.24 -107.28 REMARK 500 TYR B 125 -63.36 -100.78 REMARK 500 ARG C 12 -0.92 67.59 REMARK 500 SER C 38 -49.66 -131.32 REMARK 500 PRO C 45 151.83 -50.00 REMARK 500 THR C 76 -1.70 83.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 104 OE1 REMARK 620 2 GLU A 134 OE1 90.7 REMARK 620 3 HIS A 137 ND1 107.0 90.8 REMARK 620 4 EDO A 499 O2 86.1 91.5 166.7 REMARK 620 5 HOH A 607 O 82.8 173.2 92.9 86.2 REMARK 620 6 HOH A 748 O 161.5 100.2 88.0 78.7 85.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 134 OE2 REMARK 620 2 GLU A 197 OE2 85.2 REMARK 620 3 GLU A 231 OE2 168.0 85.4 REMARK 620 4 HIS A 234 NE2 85.3 90.6 87.3 REMARK 620 5 EDO A 499 O2 83.1 99.5 105.9 163.8 REMARK 620 6 HOH A 748 O 101.8 172.0 88.2 93.9 77.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RN9 RELATED DB: PDB REMARK 900 STRUCTURE OF THE TOLUENE/O-XYLENE MONOOXYGENASE HYDROXYLASE T201S/ REMARK 900 L272E DOUBLE MUTANT REMARK 900 RELATED ID: 3RNA RELATED DB: PDB REMARK 900 STRUCTURE OF THE TOLUENE/O-XYLENE MONOOXYGENASE HYDROXYLASE T201S/ REMARK 900 I100W DOUBLE MUTANT REMARK 900 RELATED ID: 3RNB RELATED DB: PDB REMARK 900 STRUCTURE OF THE TOLUENE/O-XYLENE MONOOXYGENASE HYDROXYLASE T201S/ REMARK 900 F176W DOUBLE MUTANT REMARK 900 RELATED ID: 3RNC RELATED DB: PDB REMARK 900 STRUCTURE OF THE TOLUENE/O-XYLENE MONOOXYGENASE HYDROXYLASE T201S/ REMARK 900 I100A DOUBLE MUTANT REMARK 900 RELATED ID: 3RNE RELATED DB: PDB REMARK 900 STRUCTURE OF THE TOLUENE/O-XYLENE MONOOXYGENASE HYDROXYLASE T201S/ REMARK 900 I276E DOUBLE MUTANT REMARK 900 RELATED ID: 3RNG RELATED DB: PDB REMARK 900 STRUCTURE OF THE TOLUENE/O-XYLENE MONOOXYGENASE HYDROXYLASE T201S/ REMARK 900 W167E DOUBLE MUTANT DBREF 3RNF A 1 498 UNP Q6IV66 Q6IV66_9PSED 1 498 DBREF 3RNF B 1 330 UNP Q6IV62 Q6IV62_9PSED 1 330 DBREF 3RNF C 1 86 UNP Q6IV65 Q6IV65_9PSED 1 86 SEQADV 3RNF SER A 201 UNP Q6IV66 THR 201 ENGINEERED MUTATION SEQADV 3RNF ALA A 271 UNP Q6IV66 VAL 271 ENGINEERED MUTATION SEQADV 3RNF LYS A 445 UNP Q6IV66 GLU 445 ENGINEERED MUTATION SEQRES 1 A 498 MET SER MET LEU LYS ARG GLU ASP TRP TYR ASP LEU THR SEQRES 2 A 498 ARG THR THR ASN TRP THR PRO LYS TYR VAL THR GLU ASN SEQRES 3 A 498 GLU LEU PHE PRO GLU GLU MET SER GLY ALA ARG GLY ILE SEQRES 4 A 498 SER MET GLU ALA TRP GLU LYS TYR ASP GLU PRO TYR LYS SEQRES 5 A 498 ILE THR TYR PRO GLU TYR VAL SER ILE GLN ARG GLU LYS SEQRES 6 A 498 ASP SER GLY ALA TYR SER ILE LYS ALA ALA LEU GLU ARG SEQRES 7 A 498 ASP GLY PHE VAL ASP ARG ALA ASP PRO GLY TRP VAL SER SEQRES 8 A 498 THR MET GLN LEU HIS PHE GLY ALA ILE ALA LEU GLU GLU SEQRES 9 A 498 TYR ALA ALA SER THR ALA GLU ALA ARG MET ALA ARG PHE SEQRES 10 A 498 ALA LYS ALA PRO GLY ASN ARG ASN MET ALA THR PHE GLY SEQRES 11 A 498 MET MET ASP GLU ASN ARG HIS GLY GLN ILE GLN LEU TYR SEQRES 12 A 498 PHE PRO TYR ALA ASN VAL LYS ARG SER ARG LYS TRP ASP SEQRES 13 A 498 TRP ALA HIS LYS ALA ILE HIS THR ASN GLU TRP ALA ALA SEQRES 14 A 498 ILE ALA ALA ARG SER PHE PHE ASP ASP MET MET MET THR SEQRES 15 A 498 ARG ASP SER VAL ALA VAL SER ILE MET LEU THR PHE ALA SEQRES 16 A 498 PHE GLU THR GLY PHE SER ASN MET GLN PHE LEU GLY LEU SEQRES 17 A 498 ALA ALA ASP ALA ALA GLU ALA GLY ASP HIS THR PHE ALA SEQRES 18 A 498 SER LEU ILE SER SER ILE GLN THR ASP GLU SER ARG HIS SEQRES 19 A 498 ALA GLN GLN GLY GLY PRO SER LEU LYS ILE LEU VAL GLU SEQRES 20 A 498 ASN GLY LYS LYS ASP GLU ALA GLN GLN MET VAL ASP VAL SEQRES 21 A 498 ALA ILE TRP ARG SER TRP LYS LEU PHE SER ALA LEU THR SEQRES 22 A 498 GLY PRO ILE MET ASP TYR TYR THR PRO LEU GLU SER ARG SEQRES 23 A 498 ASN GLN SER PHE LYS GLU PHE MET LEU GLU TRP ILE VAL SEQRES 24 A 498 ALA GLN PHE GLU ARG GLN LEU LEU ASP LEU GLY LEU ASP SEQRES 25 A 498 LYS PRO TRP TYR TRP ASP GLN PHE MET GLN ASP LEU ASP SEQRES 26 A 498 GLU THR HIS HIS GLY MET HIS LEU GLY VAL TRP TYR TRP SEQRES 27 A 498 ARG PRO THR VAL TRP TRP ASP PRO ALA ALA GLY VAL SER SEQRES 28 A 498 PRO GLU GLU ARG GLU TRP LEU GLU GLU LYS TYR PRO GLY SEQRES 29 A 498 TRP ASN ASP THR TRP GLY GLN CYS TRP ASP VAL ILE THR SEQRES 30 A 498 ASP ASN LEU VAL ASN GLY LYS PRO GLU LEU THR VAL PRO SEQRES 31 A 498 GLU THR LEU PRO THR ILE CYS ASN MET CYS ASN LEU PRO SEQRES 32 A 498 ILE ALA HIS THR PRO GLY ASN LYS TRP ASN VAL LYS ASP SEQRES 33 A 498 TYR GLN LEU GLU TYR GLU GLY ARG LEU TYR HIS PHE GLY SEQRES 34 A 498 SER GLU ALA ASP ARG TRP CYS PHE GLN ILE ASP PRO GLU SEQRES 35 A 498 ARG TYR LYS ASN HIS THR ASN LEU VAL ASP ARG PHE LEU SEQRES 36 A 498 LYS GLY GLU ILE GLN PRO ALA ASP LEU ALA GLY ALA LEU SEQRES 37 A 498 MET TYR MET SER LEU GLU PRO GLY VAL MET GLY ASP ASP SEQRES 38 A 498 ALA HIS ASP TYR GLU TRP VAL LYS ALA TYR GLN LYS LYS SEQRES 39 A 498 THR ASN ALA ALA SEQRES 1 B 330 MET SER GLU GLN GLN PRO GLU ALA LEU LYS PRO LEU LYS SEQRES 2 B 330 THR TRP SER HIS LEU ALA GLY ASN ARG ARG ARG PRO SER SEQRES 3 B 330 GLU TYR GLU VAL VAL SER THR ASN LEU HIS TYR PHE THR SEQRES 4 B 330 ASP ASN PRO GLU ARG PRO TRP GLU LEU ASP SER ASN LEU SEQRES 5 B 330 PRO MET GLN THR TRP TYR LYS LYS TYR CYS PHE ASP SER SEQRES 6 B 330 PRO LEU LYS HIS ASP ASP TRP ASN ALA PHE ARG ASP PRO SEQRES 7 B 330 ASP GLN LEU VAL TYR ARG THR TYR ASN LEU LEU GLN ASP SEQRES 8 B 330 GLY GLN GLU SER TYR VAL GLN GLY LEU PHE ASP GLN LEU SEQRES 9 B 330 ASN ASP ARG GLY HIS ASP GLN MET LEU THR ARG GLU TRP SEQRES 10 B 330 VAL GLU THR LEU ALA ARG PHE TYR THR PRO ALA ARG TYR SEQRES 11 B 330 LEU PHE HIS ALA LEU GLN MET GLY SER VAL TYR ILE HIS SEQRES 12 B 330 GLN ILE ALA PRO ALA SER THR ILE THR ASN CYS ALA THR SEQRES 13 B 330 TYR GLU THR ALA ASP HIS LEU ARG TRP LEU THR HIS THR SEQRES 14 B 330 ALA TYR ARG THR ARG GLU LEU ALA ASN CYS TYR PRO ASP SEQRES 15 B 330 VAL GLY PHE GLY LYS ARG GLU ARG ASP VAL TRP GLU ASN SEQRES 16 B 330 ASP PRO ALA TRP GLN GLY PHE ARG GLU LEU ILE GLU LYS SEQRES 17 B 330 ALA LEU ILE ALA TRP ASP TRP GLY GLU ALA PHE THR ALA SEQRES 18 B 330 ILE ASN LEU VAL THR LYS PRO ALA VAL GLU GLU ALA LEU SEQRES 19 B 330 LEU GLN GLN LEU GLY SER LEU ALA GLN SER GLU GLY ASP SEQRES 20 B 330 THR LEU LEU GLY LEU LEU ALA GLN ALA GLN LYS ARG ASP SEQRES 21 B 330 ALA GLU ARG HIS ARG ARG TRP SER SER ALA LEU VAL LYS SEQRES 22 B 330 MET ALA LEU GLU LYS GLU GLY ASN ARG GLU VAL LEU GLN SEQRES 23 B 330 LYS TRP VAL ALA LYS TRP GLU PRO LEU ALA ASP LYS ALA SEQRES 24 B 330 ILE GLU ALA TYR CYS SER ALA LEU PRO ASP GLY GLU ASN SEQRES 25 B 330 ALA ILE VAL GLU ALA LYS SER ALA SER ARG TYR VAL ARG SEQRES 26 B 330 GLN MET MET GLY LEU SEQRES 1 C 86 MET ALA THR PHE PRO ILE MET SER ASN PHE GLU ARG ASP SEQRES 2 C 86 PHE VAL ILE GLN LEU VAL PRO VAL ASP THR GLU ASP THR SEQRES 3 C 86 MET ASP GLN VAL ALA GLU LYS CYS ALA TYR HIS SER ILE SEQRES 4 C 86 ASN ARG ARG VAL HIS PRO GLN PRO GLU LYS ILE LEU ARG SEQRES 5 C 86 VAL ARG ARG HIS GLU ASP GLY THR LEU PHE PRO ARG GLY SEQRES 6 C 86 MET ILE VAL SER ASP ALA GLY LEU ARG PRO THR GLU THR SEQRES 7 C 86 LEU ASP ILE ILE PHE MET ASP ASN HET EDO A 499 4 HET FE A 500 1 HET FE A 501 1 HET 1PE A 502 16 HETNAM EDO 1,2-ETHANEDIOL HETNAM FE FE (III) ION HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 4 EDO C2 H6 O2 FORMUL 5 FE 2(FE 3+) FORMUL 7 1PE C10 H22 O6 FORMUL 8 HOH *548(H2 O) HELIX 1 1 LYS A 5 ARG A 14 1 10 HELIX 2 2 THR A 24 PHE A 29 1 6 HELIX 3 3 PRO A 30 GLY A 35 1 6 HELIX 4 4 SER A 40 GLU A 45 1 6 HELIX 5 5 THR A 54 GLU A 77 1 24 HELIX 6 6 ARG A 78 ARG A 84 5 7 HELIX 7 7 ASP A 86 ALA A 118 1 33 HELIX 8 8 ALA A 120 ALA A 147 1 28 HELIX 9 9 SER A 152 TRP A 155 5 4 HELIX 10 10 ASP A 156 ALA A 161 1 6 HELIX 11 11 ILE A 162 THR A 164 5 3 HELIX 12 12 GLU A 166 MET A 180 1 15 HELIX 13 13 ASP A 184 LEU A 192 1 9 HELIX 14 14 PHE A 200 ALA A 215 1 16 HELIX 15 15 ASP A 217 THR A 229 1 13 HELIX 16 16 ASP A 230 GLN A 236 1 7 HELIX 17 17 GLN A 237 ASN A 248 1 12 HELIX 18 18 LYS A 250 THR A 273 1 24 HELIX 19 19 THR A 273 TYR A 280 1 8 HELIX 20 20 PRO A 282 ARG A 286 5 5 HELIX 21 21 SER A 289 ILE A 298 1 10 HELIX 22 22 ILE A 298 LEU A 309 1 12 HELIX 23 23 TYR A 316 LEU A 324 1 9 HELIX 24 24 GLU A 326 TRP A 338 1 13 HELIX 25 25 ARG A 339 VAL A 342 5 4 HELIX 26 26 SER A 351 TYR A 362 1 12 HELIX 27 27 THR A 368 ASN A 382 1 15 HELIX 28 28 LYS A 384 VAL A 389 5 6 HELIX 29 29 PRO A 408 TRP A 412 5 5 HELIX 30 30 SER A 430 ILE A 439 1 10 HELIX 31 31 ASP A 440 LYS A 445 1 6 HELIX 32 32 ASN A 449 GLY A 457 1 9 HELIX 33 33 ASP A 463 MET A 471 1 9 HELIX 34 34 TYR A 485 GLN A 492 5 8 HELIX 35 35 TRP B 15 ALA B 19 5 5 HELIX 36 36 SER B 26 THR B 33 1 8 HELIX 37 37 TYR B 37 ASN B 41 5 5 HELIX 38 38 LEU B 52 CYS B 62 1 11 HELIX 39 39 ASP B 71 PHE B 75 5 5 HELIX 40 40 VAL B 82 ARG B 107 1 26 HELIX 41 41 HIS B 109 LEU B 113 5 5 HELIX 42 42 THR B 114 TYR B 125 1 12 HELIX 43 43 PRO B 127 ALA B 146 1 20 HELIX 44 44 ALA B 148 TYR B 180 1 33 HELIX 45 45 ARG B 188 ASP B 196 1 9 HELIX 46 46 ASP B 196 LEU B 210 1 15 HELIX 47 47 ASP B 214 LEU B 224 1 11 HELIX 48 48 VAL B 225 LEU B 235 1 11 HELIX 49 49 LEU B 235 GLU B 245 1 11 HELIX 50 50 ASP B 247 LEU B 276 1 30 HELIX 51 51 GLY B 280 ALA B 306 1 27 HELIX 52 52 ASP B 309 MET B 327 1 19 HELIX 53 53 THR C 26 TYR C 36 1 11 HELIX 54 54 ILE C 67 ALA C 71 5 5 SHEET 1 A 2 LEU A 419 TYR A 421 0 SHEET 2 A 2 ARG A 424 TYR A 426 -1 O TYR A 426 N LEU A 419 SHEET 1 B 5 ILE C 16 ASP C 22 0 SHEET 2 B 5 THR C 3 PHE C 10 -1 N SER C 8 O GLN C 17 SHEET 3 B 5 THR C 78 MET C 84 1 O LEU C 79 N MET C 7 SHEET 4 B 5 ILE C 50 ARG C 55 -1 N ILE C 50 O MET C 84 SHEET 5 B 5 LEU C 61 PHE C 62 -1 O PHE C 62 N VAL C 53 LINK OE1 GLU A 104 FE FE A 500 1555 1555 2.07 LINK OE1 GLU A 134 FE FE A 500 1555 1555 2.08 LINK OE2 GLU A 134 FE FE A 501 1555 1555 2.15 LINK ND1 HIS A 137 FE FE A 500 1555 1555 2.15 LINK OE2 GLU A 197 FE FE A 501 1555 1555 2.02 LINK OE2 GLU A 231 FE FE A 501 1555 1555 2.22 LINK NE2 HIS A 234 FE FE A 501 1555 1555 2.21 LINK O2 EDO A 499 FE FE A 500 1555 1555 2.23 LINK O2 EDO A 499 FE FE A 501 1555 1555 2.27 LINK FE FE A 500 O HOH A 607 1555 1555 2.10 LINK FE FE A 500 O HOH A 748 1555 1555 2.01 LINK FE FE A 501 O HOH A 748 1555 1555 2.01 CISPEP 1 GLN A 460 PRO A 461 0 -7.38 SITE 1 AC1 9 GLU A 104 GLU A 134 PHE A 196 GLU A 197 SITE 2 AC1 9 GLU A 231 FE A 500 FE A 501 HOH A 607 SITE 3 AC1 9 HOH A 748 SITE 1 AC2 7 GLU A 104 GLU A 134 HIS A 137 EDO A 499 SITE 2 AC2 7 FE A 501 HOH A 607 HOH A 748 SITE 1 AC3 7 GLU A 134 GLU A 197 GLU A 231 HIS A 234 SITE 2 AC3 7 EDO A 499 FE A 500 HOH A 748 SITE 1 AC4 4 TRP A 167 THR A 341 LEU A 393 PRO A 394 CRYST1 183.340 183.340 68.370 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005454 0.003149 0.000000 0.00000 SCALE2 0.000000 0.006298 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014626 0.00000