data_3RNK # _entry.id 3RNK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3RNK pdb_00003rnk 10.2210/pdb3rnk/pdb RCSB RCSB065151 ? ? WWPDB D_1000065151 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1NPU . unspecified PDB 3BOV . unspecified PDB 3BP5 . unspecified PDB 3BP6 . unspecified PDB 3RNQ . unspecified # _pdbx_database_status.entry_id 3RNK _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-04-22 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lazar-Molnar, E.' 1 'Ramagopal, U.A.' 2 'Cao, E.' 3 'Nathenson, S.G.' 4 'Almo, S.C.' 5 # _citation.id primary _citation.title 'Crystal structure of the complex between mouse PD-1 mutant and PD-L2 IgV domain' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lazar-Molnar, E.' 1 ? primary 'Ramagopal, U.A.' 2 ? primary 'Cao, E.' 3 ? primary 'Nathenson, S.G.' 4 ? primary 'Almo, S.C.' 5 ? # _cell.length_a 36.057 _cell.length_b 60.246 _cell.length_c 80.087 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3RNK _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3RNK _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Programmed cell death protein 1' 13218.794 1 ? 'C83S, A132L' 'Residues 34-150' ? 2 polymer man 'Programmed cell death 1 ligand 2' 11691.254 1 ? ? 'Rsidues 20-123' ? 3 water nat water 18.015 110 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Protein PD-1, mPD-1' 2 'PD-1 ligand 2, PD-L2, PDCD1 ligand 2, Programmed death ligand 2, Butyrophilin B7-DC, B7-DC' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SLTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDT RRNDSGIYLCGAISLHPKLKIEESPGAELVVTERILE ; ;SLTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDT RRNDSGIYLCGAISLHPKLKIEESPGAELVVTERILE ; A ? 2 'polypeptide(L)' no no ;LFTVTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQ YRCLVICGAAWDYKYLTVKVKASY ; ;LFTVTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQ YRCLVICGAAWDYKYLTVKVKASY ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 LEU n 1 3 THR n 1 4 PHE n 1 5 TYR n 1 6 PRO n 1 7 ALA n 1 8 TRP n 1 9 LEU n 1 10 THR n 1 11 VAL n 1 12 SER n 1 13 GLU n 1 14 GLY n 1 15 ALA n 1 16 ASN n 1 17 ALA n 1 18 THR n 1 19 PHE n 1 20 THR n 1 21 CYS n 1 22 SER n 1 23 LEU n 1 24 SER n 1 25 ASN n 1 26 TRP n 1 27 SER n 1 28 GLU n 1 29 ASP n 1 30 LEU n 1 31 MET n 1 32 LEU n 1 33 ASN n 1 34 TRP n 1 35 ASN n 1 36 ARG n 1 37 LEU n 1 38 SER n 1 39 PRO n 1 40 SER n 1 41 ASN n 1 42 GLN n 1 43 THR n 1 44 GLU n 1 45 LYS n 1 46 GLN n 1 47 ALA n 1 48 ALA n 1 49 PHE n 1 50 SER n 1 51 ASN n 1 52 GLY n 1 53 LEU n 1 54 SER n 1 55 GLN n 1 56 PRO n 1 57 VAL n 1 58 GLN n 1 59 ASP n 1 60 ALA n 1 61 ARG n 1 62 PHE n 1 63 GLN n 1 64 ILE n 1 65 ILE n 1 66 GLN n 1 67 LEU n 1 68 PRO n 1 69 ASN n 1 70 ARG n 1 71 HIS n 1 72 ASP n 1 73 PHE n 1 74 HIS n 1 75 MET n 1 76 ASN n 1 77 ILE n 1 78 LEU n 1 79 ASP n 1 80 THR n 1 81 ARG n 1 82 ARG n 1 83 ASN n 1 84 ASP n 1 85 SER n 1 86 GLY n 1 87 ILE n 1 88 TYR n 1 89 LEU n 1 90 CYS n 1 91 GLY n 1 92 ALA n 1 93 ILE n 1 94 SER n 1 95 LEU n 1 96 HIS n 1 97 PRO n 1 98 LYS n 1 99 LEU n 1 100 LYS n 1 101 ILE n 1 102 GLU n 1 103 GLU n 1 104 SER n 1 105 PRO n 1 106 GLY n 1 107 ALA n 1 108 GLU n 1 109 LEU n 1 110 VAL n 1 111 VAL n 1 112 THR n 1 113 GLU n 1 114 ARG n 1 115 ILE n 1 116 LEU n 1 117 GLU n 2 1 LEU n 2 2 PHE n 2 3 THR n 2 4 VAL n 2 5 THR n 2 6 ALA n 2 7 PRO n 2 8 LYS n 2 9 GLU n 2 10 VAL n 2 11 TYR n 2 12 THR n 2 13 VAL n 2 14 ASP n 2 15 VAL n 2 16 GLY n 2 17 SER n 2 18 SER n 2 19 VAL n 2 20 SER n 2 21 LEU n 2 22 GLU n 2 23 CYS n 2 24 ASP n 2 25 PHE n 2 26 ASP n 2 27 ARG n 2 28 ARG n 2 29 GLU n 2 30 CYS n 2 31 THR n 2 32 GLU n 2 33 LEU n 2 34 GLU n 2 35 GLY n 2 36 ILE n 2 37 ARG n 2 38 ALA n 2 39 SER n 2 40 LEU n 2 41 GLN n 2 42 LYS n 2 43 VAL n 2 44 GLU n 2 45 ASN n 2 46 ASP n 2 47 THR n 2 48 SER n 2 49 LEU n 2 50 GLN n 2 51 SER n 2 52 GLU n 2 53 ARG n 2 54 ALA n 2 55 THR n 2 56 LEU n 2 57 LEU n 2 58 GLU n 2 59 GLU n 2 60 GLN n 2 61 LEU n 2 62 PRO n 2 63 LEU n 2 64 GLY n 2 65 LYS n 2 66 ALA n 2 67 LEU n 2 68 PHE n 2 69 HIS n 2 70 ILE n 2 71 PRO n 2 72 SER n 2 73 VAL n 2 74 GLN n 2 75 VAL n 2 76 ARG n 2 77 ASP n 2 78 SER n 2 79 GLY n 2 80 GLN n 2 81 TYR n 2 82 ARG n 2 83 CYS n 2 84 LEU n 2 85 VAL n 2 86 ILE n 2 87 CYS n 2 88 GLY n 2 89 ALA n 2 90 ALA n 2 91 TRP n 2 92 ASP n 2 93 TYR n 2 94 LYS n 2 95 TYR n 2 96 LEU n 2 97 THR n 2 98 VAL n 2 99 LYS n 2 100 VAL n 2 101 LYS n 2 102 ALA n 2 103 SER n 2 104 TYR n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? mouse ? 'Pd1, Pdcd1' ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'Rosetta (DE3) pLysS' ? ? ? ? ? ? ? plasmid ? ? ? PET-3a ? ? 2 1 sample ? ? ? mouse ? 'B7dc, Btdc, Cd273, Murine, Pdcd1lg2, Pdl2' ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'Rosetta (DE3) pLysS' ? ? ? ? ? ? ? plasmid ? ? ? pET-3a ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP PDCD1_MOUSE Q02242 1 ;SLTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFCNGLSQPVQDARFQIIQLPNRHDFHMNILDT RRNDSGIYLCGAISLHPKAKIEESPGAELVVTERILE ; 34 ? 2 UNP PD1L2_MOUSE Q9WUL5 2 ;LFTVTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQ YRCLVICGAAWDYKYLTVKVKASY ; 20 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3RNK A 1 ? 117 ? Q02242 34 ? 150 ? 34 150 2 2 3RNK B 1 ? 104 ? Q9WUL5 20 ? 123 ? 20 123 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3RNK SER A 50 ? UNP Q02242 CYS 83 'engineered mutation' 83 1 1 3RNK LEU A 99 ? UNP Q02242 ALA 132 'engineered mutation' 132 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3RNK _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.75 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 29.55 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.pdbx_details '0.1M HEPES pH 7, 0.1M Magnesium chloride, 15% PEG 4000, Vapor diffusion, Sitting drop, temperature 291K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-07-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A # _reflns.entry_id 3RNK _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.74 _reflns.d_resolution_low 50 _reflns.number_all 17532 _reflns.number_obs 17532 _reflns.percent_possible_obs 95.1 _reflns.pdbx_Rmerge_I_obs 0.62 _reflns.pdbx_Rsym_value 0.63 _reflns.pdbx_netI_over_sigmaI 26.23 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.74 _reflns_shell.d_res_low 1.81 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 69.6 _reflns_shell.Rmerge_I_obs 0.155 _reflns_shell.meanI_over_sigI_obs 4.42 _reflns_shell.pdbx_Rsym_value 0.160 _reflns_shell.pdbx_redundancy 2.4 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3RNK _refine.ls_d_res_high 1.7400 _refine.ls_d_res_low 48.1700 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 94.3900 _refine.ls_number_reflns_obs 17485 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1974 _refine.ls_R_factor_R_work 0.1947 _refine.ls_wR_factor_R_work 0.2006 _refine.ls_R_factor_R_free 0.2469 _refine.ls_wR_factor_R_free 0.2493 _refine.ls_percent_reflns_R_free 5.2000 _refine.ls_number_reflns_R_free 909 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 25.5806 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.5500 _refine.aniso_B[2][2] 3.2000 _refine.aniso_B[3][3] -1.6500 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9530 _refine.correlation_coeff_Fo_to_Fc_free 0.9220 _refine.overall_SU_R_Cruickshank_DPI 0.1555 _refine.overall_SU_R_free 0.1477 _refine.pdbx_overall_ESU_R_Free 0.1480 _refine.overall_SU_ML 0.0950 _refine.overall_SU_B 2.8610 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 1NPU,3BOV _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8276 _refine.B_iso_max 58.450 _refine.B_iso_min 13.360 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1700 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 110 _refine_hist.number_atoms_total 1810 _refine_hist.d_res_high 1.7400 _refine_hist.d_res_low 48.1700 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1747 0.012 0.022 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2378 1.412 1.957 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 218 6.661 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 81 37.647 24.444 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 296 14.876 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 11 19.014 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 271 0.102 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1319 0.006 0.021 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 1083 0.971 1.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1753 1.812 2.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 664 2.317 3.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 623 3.878 4.500 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.7410 _refine_ls_shell.d_res_low 1.7860 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 59.9800 _refine_ls_shell.number_reflns_R_work 759 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2350 _refine_ls_shell.R_factor_R_free 0.2800 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 37 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 796 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3RNK _struct.title 'Crystal structure of the complex between mouse PD-1 mutant and PD-L2 IgV domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3RNK _struct_keywords.text 'PD-1; PD-L2; B7-DC; Programmed death-1 Ligand 2, complex, costimulatory, IgV, IMMUNE SYSTEM' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 81 ? SER A 85 ? ARG A 114 SER A 118 5 ? 5 HELX_P HELX_P2 2 ARG B 27 ? CYS B 30 ? ARG B 46 CYS B 49 5 ? 4 HELX_P HELX_P3 3 GLU B 58 ? LEU B 63 ? GLU B 77 LEU B 82 5 ? 6 HELX_P HELX_P4 4 GLN B 74 ? SER B 78 ? GLN B 93 SER B 97 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 21 SG ? ? ? 1_555 A CYS 90 SG ? ? A CYS 54 A CYS 123 1_555 ? ? ? ? ? ? ? 2.046 ? ? disulf2 disulf ? ? B CYS 23 SG ? ? ? 1_555 B CYS 83 SG ? ? B CYS 42 B CYS 102 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf3 disulf ? ? B CYS 30 SG ? ? ? 1_555 B CYS 87 SG ? ? B CYS 49 B CYS 106 1_555 ? ? ? ? ? ? ? 2.041 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 5 A . ? TYR 38 A PRO 6 A ? PRO 39 A 1 -0.30 2 HIS 96 A . ? HIS 129 A PRO 97 A ? PRO 130 A 1 6.62 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 5 ? D ? 4 ? E ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 2 ? TYR A 5 ? LEU A 35 TYR A 38 A 2 ALA A 17 ? LEU A 23 ? ALA A 50 LEU A 56 A 3 ASP A 72 ? ILE A 77 ? ASP A 105 ILE A 110 A 4 PHE A 62 ? GLN A 66 ? PHE A 95 GLN A 99 B 1 TRP A 8 ? SER A 12 ? TRP A 41 SER A 45 B 2 ALA A 107 ? THR A 112 ? ALA A 140 THR A 145 B 3 GLY A 86 ? SER A 94 ? GLY A 119 SER A 127 B 4 LEU A 32 ? LEU A 37 ? LEU A 65 LEU A 70 B 5 THR A 43 ? SER A 50 ? THR A 76 SER A 83 B 6 LEU A 53 ? PRO A 56 ? LEU A 86 PRO A 89 C 1 TRP A 8 ? SER A 12 ? TRP A 41 SER A 45 C 2 ALA A 107 ? THR A 112 ? ALA A 140 THR A 145 C 3 GLY A 86 ? SER A 94 ? GLY A 119 SER A 127 C 4 LYS A 100 ? GLU A 103 ? LYS A 133 GLU A 136 C 5 THR B 47 ? LEU B 49 ? THR B 66 LEU B 68 D 1 VAL B 4 ? THR B 5 ? VAL B 23 THR B 24 D 2 VAL B 19 ? PHE B 25 ? VAL B 38 PHE B 44 D 3 LYS B 65 ? ILE B 70 ? LYS B 84 ILE B 89 D 4 THR B 55 ? LEU B 56 ? THR B 74 LEU B 75 E 1 VAL B 10 ? ASP B 14 ? VAL B 29 ASP B 33 E 2 ALA B 90 ? LYS B 101 ? ALA B 109 LYS B 120 E 3 GLY B 79 ? CYS B 87 ? GLY B 98 CYS B 106 E 4 ILE B 36 ? LYS B 42 ? ILE B 55 LYS B 61 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 5 ? N TYR A 38 O THR A 20 ? O THR A 53 A 2 3 N PHE A 19 ? N PHE A 52 O MET A 75 ? O MET A 108 A 3 4 O HIS A 74 ? O HIS A 107 N ILE A 65 ? N ILE A 98 B 1 2 N LEU A 9 ? N LEU A 42 O GLU A 108 ? O GLU A 141 B 2 3 O LEU A 109 ? O LEU A 142 N GLY A 86 ? N GLY A 119 B 3 4 O GLY A 91 ? O GLY A 124 N ASN A 33 ? N ASN A 66 B 4 5 N TRP A 34 ? N TRP A 67 O GLN A 46 ? O GLN A 79 B 5 6 N ALA A 48 ? N ALA A 81 O GLN A 55 ? O GLN A 88 C 1 2 N LEU A 9 ? N LEU A 42 O GLU A 108 ? O GLU A 141 C 2 3 O LEU A 109 ? O LEU A 142 N GLY A 86 ? N GLY A 119 C 3 4 N ALA A 92 ? N ALA A 125 O GLU A 102 ? O GLU A 135 C 4 5 N ILE A 101 ? N ILE A 134 O SER B 48 ? O SER B 67 D 1 2 N THR B 5 ? N THR B 24 O ASP B 24 ? O ASP B 43 D 2 3 N LEU B 21 ? N LEU B 40 O PHE B 68 ? O PHE B 87 D 3 4 O HIS B 69 ? O HIS B 88 N THR B 55 ? N THR B 74 E 1 2 N TYR B 11 ? N TYR B 30 O LYS B 99 ? O LYS B 118 E 2 3 O ALA B 90 ? O ALA B 109 N CYS B 87 ? N CYS B 106 E 3 4 O ILE B 86 ? O ILE B 105 N ARG B 37 ? N ARG B 56 # _atom_sites.entry_id 3RNK _atom_sites.fract_transf_matrix[1][1] 0.027734 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016599 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012486 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 34 34 SER SER A . n A 1 2 LEU 2 35 35 LEU LEU A . n A 1 3 THR 3 36 36 THR THR A . n A 1 4 PHE 4 37 37 PHE PHE A . n A 1 5 TYR 5 38 38 TYR TYR A . n A 1 6 PRO 6 39 39 PRO PRO A . n A 1 7 ALA 7 40 40 ALA ALA A . n A 1 8 TRP 8 41 41 TRP TRP A . n A 1 9 LEU 9 42 42 LEU LEU A . n A 1 10 THR 10 43 43 THR THR A . n A 1 11 VAL 11 44 44 VAL VAL A . n A 1 12 SER 12 45 45 SER SER A . n A 1 13 GLU 13 46 46 GLU GLU A . n A 1 14 GLY 14 47 47 GLY GLY A . n A 1 15 ALA 15 48 48 ALA ALA A . n A 1 16 ASN 16 49 49 ASN ASN A . n A 1 17 ALA 17 50 50 ALA ALA A . n A 1 18 THR 18 51 51 THR THR A . n A 1 19 PHE 19 52 52 PHE PHE A . n A 1 20 THR 20 53 53 THR THR A . n A 1 21 CYS 21 54 54 CYS CYS A . n A 1 22 SER 22 55 55 SER SER A . n A 1 23 LEU 23 56 56 LEU LEU A . n A 1 24 SER 24 57 57 SER SER A . n A 1 25 ASN 25 58 58 ASN ASN A . n A 1 26 TRP 26 59 59 TRP TRP A . n A 1 27 SER 27 60 60 SER SER A . n A 1 28 GLU 28 61 61 GLU GLU A . n A 1 29 ASP 29 62 62 ASP ASP A . n A 1 30 LEU 30 63 63 LEU LEU A . n A 1 31 MET 31 64 64 MET MET A . n A 1 32 LEU 32 65 65 LEU LEU A . n A 1 33 ASN 33 66 66 ASN ASN A . n A 1 34 TRP 34 67 67 TRP TRP A . n A 1 35 ASN 35 68 68 ASN ASN A . n A 1 36 ARG 36 69 69 ARG ARG A . n A 1 37 LEU 37 70 70 LEU LEU A . n A 1 38 SER 38 71 71 SER SER A . n A 1 39 PRO 39 72 72 PRO PRO A . n A 1 40 SER 40 73 73 SER SER A . n A 1 41 ASN 41 74 74 ASN ASN A . n A 1 42 GLN 42 75 75 GLN GLN A . n A 1 43 THR 43 76 76 THR THR A . n A 1 44 GLU 44 77 77 GLU GLU A . n A 1 45 LYS 45 78 78 LYS LYS A . n A 1 46 GLN 46 79 79 GLN GLN A . n A 1 47 ALA 47 80 80 ALA ALA A . n A 1 48 ALA 48 81 81 ALA ALA A . n A 1 49 PHE 49 82 82 PHE PHE A . n A 1 50 SER 50 83 83 SER SER A . n A 1 51 ASN 51 84 84 ASN ASN A . n A 1 52 GLY 52 85 85 GLY GLY A . n A 1 53 LEU 53 86 86 LEU LEU A . n A 1 54 SER 54 87 87 SER SER A . n A 1 55 GLN 55 88 88 GLN GLN A . n A 1 56 PRO 56 89 89 PRO PRO A . n A 1 57 VAL 57 90 90 VAL VAL A . n A 1 58 GLN 58 91 91 GLN GLN A . n A 1 59 ASP 59 92 92 ASP ASP A . n A 1 60 ALA 60 93 93 ALA ALA A . n A 1 61 ARG 61 94 94 ARG ARG A . n A 1 62 PHE 62 95 95 PHE PHE A . n A 1 63 GLN 63 96 96 GLN GLN A . n A 1 64 ILE 64 97 97 ILE ILE A . n A 1 65 ILE 65 98 98 ILE ILE A . n A 1 66 GLN 66 99 99 GLN GLN A . n A 1 67 LEU 67 100 100 LEU LEU A . n A 1 68 PRO 68 101 101 PRO PRO A . n A 1 69 ASN 69 102 102 ASN ASN A . n A 1 70 ARG 70 103 103 ARG ARG A . n A 1 71 HIS 71 104 104 HIS HIS A . n A 1 72 ASP 72 105 105 ASP ASP A . n A 1 73 PHE 73 106 106 PHE PHE A . n A 1 74 HIS 74 107 107 HIS HIS A . n A 1 75 MET 75 108 108 MET MET A . n A 1 76 ASN 76 109 109 ASN ASN A . n A 1 77 ILE 77 110 110 ILE ILE A . n A 1 78 LEU 78 111 111 LEU LEU A . n A 1 79 ASP 79 112 112 ASP ASP A . n A 1 80 THR 80 113 113 THR THR A . n A 1 81 ARG 81 114 114 ARG ARG A . n A 1 82 ARG 82 115 115 ARG ARG A . n A 1 83 ASN 83 116 116 ASN ASN A . n A 1 84 ASP 84 117 117 ASP ASP A . n A 1 85 SER 85 118 118 SER SER A . n A 1 86 GLY 86 119 119 GLY GLY A . n A 1 87 ILE 87 120 120 ILE ILE A . n A 1 88 TYR 88 121 121 TYR TYR A . n A 1 89 LEU 89 122 122 LEU LEU A . n A 1 90 CYS 90 123 123 CYS CYS A . n A 1 91 GLY 91 124 124 GLY GLY A . n A 1 92 ALA 92 125 125 ALA ALA A . n A 1 93 ILE 93 126 126 ILE ILE A . n A 1 94 SER 94 127 127 SER SER A . n A 1 95 LEU 95 128 128 LEU LEU A . n A 1 96 HIS 96 129 129 HIS HIS A . n A 1 97 PRO 97 130 130 PRO PRO A . n A 1 98 LYS 98 131 131 LYS LYS A . n A 1 99 LEU 99 132 132 LEU LEU A . n A 1 100 LYS 100 133 133 LYS LYS A . n A 1 101 ILE 101 134 134 ILE ILE A . n A 1 102 GLU 102 135 135 GLU GLU A . n A 1 103 GLU 103 136 136 GLU GLU A . n A 1 104 SER 104 137 137 SER SER A . n A 1 105 PRO 105 138 138 PRO PRO A . n A 1 106 GLY 106 139 139 GLY GLY A . n A 1 107 ALA 107 140 140 ALA ALA A . n A 1 108 GLU 108 141 141 GLU GLU A . n A 1 109 LEU 109 142 142 LEU LEU A . n A 1 110 VAL 110 143 143 VAL VAL A . n A 1 111 VAL 111 144 144 VAL VAL A . n A 1 112 THR 112 145 145 THR THR A . n A 1 113 GLU 113 146 ? ? ? A . n A 1 114 ARG 114 147 ? ? ? A . n A 1 115 ILE 115 148 ? ? ? A . n A 1 116 LEU 116 149 ? ? ? A . n A 1 117 GLU 117 150 ? ? ? A . n B 2 1 LEU 1 20 20 LEU LEU B . n B 2 2 PHE 2 21 21 PHE PHE B . n B 2 3 THR 3 22 22 THR THR B . n B 2 4 VAL 4 23 23 VAL VAL B . n B 2 5 THR 5 24 24 THR THR B . n B 2 6 ALA 6 25 25 ALA ALA B . n B 2 7 PRO 7 26 26 PRO PRO B . n B 2 8 LYS 8 27 27 LYS LYS B . n B 2 9 GLU 9 28 28 GLU GLU B . n B 2 10 VAL 10 29 29 VAL VAL B . n B 2 11 TYR 11 30 30 TYR TYR B . n B 2 12 THR 12 31 31 THR THR B . n B 2 13 VAL 13 32 32 VAL VAL B . n B 2 14 ASP 14 33 33 ASP ASP B . n B 2 15 VAL 15 34 34 VAL VAL B . n B 2 16 GLY 16 35 35 GLY GLY B . n B 2 17 SER 17 36 36 SER SER B . n B 2 18 SER 18 37 37 SER SER B . n B 2 19 VAL 19 38 38 VAL VAL B . n B 2 20 SER 20 39 39 SER SER B . n B 2 21 LEU 21 40 40 LEU LEU B . n B 2 22 GLU 22 41 41 GLU GLU B . n B 2 23 CYS 23 42 42 CYS CYS B . n B 2 24 ASP 24 43 43 ASP ASP B . n B 2 25 PHE 25 44 44 PHE PHE B . n B 2 26 ASP 26 45 45 ASP ASP B . n B 2 27 ARG 27 46 46 ARG ARG B . n B 2 28 ARG 28 47 47 ARG ARG B . n B 2 29 GLU 29 48 48 GLU GLU B . n B 2 30 CYS 30 49 49 CYS CYS B . n B 2 31 THR 31 50 50 THR THR B . n B 2 32 GLU 32 51 51 GLU GLU B . n B 2 33 LEU 33 52 52 LEU LEU B . n B 2 34 GLU 34 53 53 GLU GLU B . n B 2 35 GLY 35 54 54 GLY GLY B . n B 2 36 ILE 36 55 55 ILE ILE B . n B 2 37 ARG 37 56 56 ARG ARG B . n B 2 38 ALA 38 57 57 ALA ALA B . n B 2 39 SER 39 58 58 SER SER B . n B 2 40 LEU 40 59 59 LEU LEU B . n B 2 41 GLN 41 60 60 GLN GLN B . n B 2 42 LYS 42 61 61 LYS LYS B . n B 2 43 VAL 43 62 62 VAL VAL B . n B 2 44 GLU 44 63 63 GLU GLU B . n B 2 45 ASN 45 64 64 ASN ASN B . n B 2 46 ASP 46 65 65 ASP ASP B . n B 2 47 THR 47 66 66 THR THR B . n B 2 48 SER 48 67 67 SER SER B . n B 2 49 LEU 49 68 68 LEU LEU B . n B 2 50 GLN 50 69 69 GLN GLN B . n B 2 51 SER 51 70 70 SER SER B . n B 2 52 GLU 52 71 71 GLU GLU B . n B 2 53 ARG 53 72 72 ARG ARG B . n B 2 54 ALA 54 73 73 ALA ALA B . n B 2 55 THR 55 74 74 THR THR B . n B 2 56 LEU 56 75 75 LEU LEU B . n B 2 57 LEU 57 76 76 LEU LEU B . n B 2 58 GLU 58 77 77 GLU GLU B . n B 2 59 GLU 59 78 78 GLU GLU B . n B 2 60 GLN 60 79 79 GLN GLN B . n B 2 61 LEU 61 80 80 LEU LEU B . n B 2 62 PRO 62 81 81 PRO PRO B . n B 2 63 LEU 63 82 82 LEU LEU B . n B 2 64 GLY 64 83 83 GLY GLY B . n B 2 65 LYS 65 84 84 LYS LYS B . n B 2 66 ALA 66 85 85 ALA ALA B . n B 2 67 LEU 67 86 86 LEU LEU B . n B 2 68 PHE 68 87 87 PHE PHE B . n B 2 69 HIS 69 88 88 HIS HIS B . n B 2 70 ILE 70 89 89 ILE ILE B . n B 2 71 PRO 71 90 90 PRO PRO B . n B 2 72 SER 72 91 91 SER SER B . n B 2 73 VAL 73 92 92 VAL VAL B . n B 2 74 GLN 74 93 93 GLN GLN B . n B 2 75 VAL 75 94 94 VAL VAL B . n B 2 76 ARG 76 95 95 ARG ARG B . n B 2 77 ASP 77 96 96 ASP ASP B . n B 2 78 SER 78 97 97 SER SER B . n B 2 79 GLY 79 98 98 GLY GLY B . n B 2 80 GLN 80 99 99 GLN GLN B . n B 2 81 TYR 81 100 100 TYR TYR B . n B 2 82 ARG 82 101 101 ARG ARG B . n B 2 83 CYS 83 102 102 CYS CYS B . n B 2 84 LEU 84 103 103 LEU LEU B . n B 2 85 VAL 85 104 104 VAL VAL B . n B 2 86 ILE 86 105 105 ILE ILE B . n B 2 87 CYS 87 106 106 CYS CYS B . n B 2 88 GLY 88 107 107 GLY GLY B . n B 2 89 ALA 89 108 108 ALA ALA B . n B 2 90 ALA 90 109 109 ALA ALA B . n B 2 91 TRP 91 110 110 TRP TRP B . n B 2 92 ASP 92 111 111 ASP ASP B . n B 2 93 TYR 93 112 112 TYR TYR B . n B 2 94 LYS 94 113 113 LYS LYS B . n B 2 95 TYR 95 114 114 TYR TYR B . n B 2 96 LEU 96 115 115 LEU LEU B . n B 2 97 THR 97 116 116 THR THR B . n B 2 98 VAL 98 117 117 VAL VAL B . n B 2 99 LYS 99 118 118 LYS LYS B . n B 2 100 VAL 100 119 119 VAL VAL B . n B 2 101 LYS 101 120 120 LYS LYS B . n B 2 102 ALA 102 121 121 ALA ALA B . n B 2 103 SER 103 122 122 SER SER B . n B 2 104 TYR 104 123 123 TYR TYR B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 1 1 HOH HOH A . C 3 HOH 2 5 5 HOH HOH A . C 3 HOH 3 6 6 HOH HOH A . C 3 HOH 4 7 7 HOH HOH A . C 3 HOH 5 8 8 HOH HOH A . C 3 HOH 6 9 9 HOH HOH A . C 3 HOH 7 10 10 HOH HOH A . C 3 HOH 8 12 12 HOH HOH A . C 3 HOH 9 13 13 HOH HOH A . C 3 HOH 10 14 14 HOH HOH A . C 3 HOH 11 17 17 HOH HOH A . C 3 HOH 12 18 18 HOH HOH A . C 3 HOH 13 19 19 HOH HOH A . C 3 HOH 14 23 23 HOH HOH A . C 3 HOH 15 24 24 HOH HOH A . C 3 HOH 16 25 25 HOH HOH A . C 3 HOH 17 27 27 HOH HOH A . C 3 HOH 18 31 31 HOH HOH A . C 3 HOH 19 32 32 HOH HOH A . C 3 HOH 20 151 34 HOH HOH A . C 3 HOH 21 152 36 HOH HOH A . C 3 HOH 22 153 37 HOH HOH A . C 3 HOH 23 154 38 HOH HOH A . C 3 HOH 24 155 40 HOH HOH A . C 3 HOH 25 156 41 HOH HOH A . C 3 HOH 26 157 42 HOH HOH A . C 3 HOH 27 158 44 HOH HOH A . C 3 HOH 28 159 49 HOH HOH A . C 3 HOH 29 160 52 HOH HOH A . C 3 HOH 30 161 57 HOH HOH A . C 3 HOH 31 162 58 HOH HOH A . C 3 HOH 32 163 59 HOH HOH A . C 3 HOH 33 164 60 HOH HOH A . C 3 HOH 34 165 64 HOH HOH A . C 3 HOH 35 166 69 HOH HOH A . C 3 HOH 36 167 71 HOH HOH A . C 3 HOH 37 168 72 HOH HOH A . C 3 HOH 38 169 75 HOH HOH A . C 3 HOH 39 170 89 HOH HOH A . C 3 HOH 40 171 103 HOH HOH A . C 3 HOH 41 172 105 HOH HOH A . C 3 HOH 42 173 106 HOH HOH A . C 3 HOH 43 174 117 HOH HOH A . C 3 HOH 44 175 122 HOH HOH A . C 3 HOH 45 176 123 HOH HOH A . C 3 HOH 46 177 124 HOH HOH A . C 3 HOH 47 178 125 HOH HOH A . C 3 HOH 48 179 126 HOH HOH A . C 3 HOH 49 180 128 HOH HOH A . C 3 HOH 50 181 129 HOH HOH A . C 3 HOH 51 182 130 HOH HOH A . C 3 HOH 52 183 132 HOH HOH A . C 3 HOH 53 184 134 HOH HOH A . C 3 HOH 54 185 99 HOH HOH A . C 3 HOH 55 186 103 HOH HOH A . C 3 HOH 56 187 1 HOH HOH A . C 3 HOH 57 188 72 HOH HOH A . D 3 HOH 1 1 1 HOH HOH B . D 3 HOH 2 2 2 HOH HOH B . D 3 HOH 3 3 3 HOH HOH B . D 3 HOH 4 4 4 HOH HOH B . D 3 HOH 5 6 6 HOH HOH B . D 3 HOH 6 11 11 HOH HOH B . D 3 HOH 7 13 13 HOH HOH B . D 3 HOH 8 15 15 HOH HOH B . D 3 HOH 9 16 16 HOH HOH B . D 3 HOH 10 17 17 HOH HOH B . D 3 HOH 11 124 21 HOH HOH B . D 3 HOH 12 125 22 HOH HOH B . D 3 HOH 13 126 26 HOH HOH B . D 3 HOH 14 127 127 HOH HOH B . D 3 HOH 15 128 27 HOH HOH B . D 3 HOH 16 129 28 HOH HOH B . D 3 HOH 17 130 29 HOH HOH B . D 3 HOH 18 131 131 HOH HOH B . D 3 HOH 19 132 30 HOH HOH B . D 3 HOH 20 133 133 HOH HOH B . D 3 HOH 21 134 33 HOH HOH B . D 3 HOH 22 135 35 HOH HOH B . D 3 HOH 23 136 39 HOH HOH B . D 3 HOH 24 137 43 HOH HOH B . D 3 HOH 25 138 45 HOH HOH B . D 3 HOH 26 139 46 HOH HOH B . D 3 HOH 27 140 47 HOH HOH B . D 3 HOH 28 141 48 HOH HOH B . D 3 HOH 29 142 50 HOH HOH B . D 3 HOH 30 143 51 HOH HOH B . D 3 HOH 31 144 53 HOH HOH B . D 3 HOH 32 145 54 HOH HOH B . D 3 HOH 33 146 55 HOH HOH B . D 3 HOH 34 147 56 HOH HOH B . D 3 HOH 35 148 61 HOH HOH B . D 3 HOH 36 149 62 HOH HOH B . D 3 HOH 37 150 67 HOH HOH B . D 3 HOH 38 151 68 HOH HOH B . D 3 HOH 39 152 70 HOH HOH B . D 3 HOH 40 153 73 HOH HOH B . D 3 HOH 41 154 74 HOH HOH B . D 3 HOH 42 155 76 HOH HOH B . D 3 HOH 43 156 78 HOH HOH B . D 3 HOH 44 157 82 HOH HOH B . D 3 HOH 45 158 87 HOH HOH B . D 3 HOH 46 159 107 HOH HOH B . D 3 HOH 47 160 108 HOH HOH B . D 3 HOH 48 161 109 HOH HOH B . D 3 HOH 49 162 118 HOH HOH B . D 3 HOH 50 163 2 HOH HOH B . D 3 HOH 51 164 11 HOH HOH B . D 3 HOH 52 165 37 HOH HOH B . D 3 HOH 53 166 104 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2070 ? 1 MORE -6 ? 1 'SSA (A^2)' 11170 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2013-12-25 4 'Structure model' 1 3 2018-01-24 5 'Structure model' 1 4 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Other 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Structure summary' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' audit_author 2 4 'Structure model' citation_author 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' pdbx_initial_refinement_model 7 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_audit_author.name' 2 4 'Structure model' '_citation_author.name' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 CBASS . ? ? ? ? 'data collection' ? ? ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 6 MOLREP . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 84 ? ? 59.95 -111.78 2 1 GLN A 91 ? ? -146.47 -23.58 3 1 HIS A 104 ? ? -88.51 40.80 4 1 ASP A 112 ? ? 54.28 71.01 5 1 ASN B 64 ? ? 153.57 -156.90 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B ASN 64 ? CG ? B ASN 45 CG 2 1 Y 1 B ASN 64 ? OD1 ? B ASN 45 OD1 3 1 Y 1 B ASN 64 ? ND2 ? B ASN 45 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 146 ? A GLU 113 2 1 Y 1 A ARG 147 ? A ARG 114 3 1 Y 1 A ILE 148 ? A ILE 115 4 1 Y 1 A LEU 149 ? A LEU 116 5 1 Y 1 A GLU 150 ? A GLU 117 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 1NPU 1NPU,3BOV 2 ? 'experimental model' PDB 3BOV 1NPU,3BOV #