HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 22-APR-11 3RNS TITLE CUPIN 2 CONSERVED BARREL DOMAIN PROTEIN FROM LEPTOTRICHIA BUCCALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CUPIN 2 CONSERVED BARREL DOMAIN PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEPTOTRICHIA BUCCALIS; SOURCE 3 ORGANISM_TAXID: 523794; SOURCE 4 STRAIN: C-1013-B; SOURCE 5 GENE: LEBU_0116; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, CONSERVED BARREL DOMAIN, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,C.TESAR,J.BEARDEN,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 3 09-OCT-24 3RNS 1 REMARK SEQADV LINK REVDAT 2 08-NOV-17 3RNS 1 REMARK REVDAT 1 11-MAY-11 3RNS 0 JRNL AUTH J.OSIPIUK,C.TESAR,J.BEARDEN,A.JOACHIMIAK JRNL TITL CUPIN 2 CONSERVED BARREL DOMAIN PROTEIN FROM LEPTOTRICHIA JRNL TITL 2 BUCCALIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 15938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 785 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.07 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.12 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1053 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1633 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 61 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.35000 REMARK 3 B22 (A**2) : 1.35000 REMARK 3 B33 (A**2) : -2.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.636 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1771 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1200 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2416 ; 1.701 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2987 ; 0.887 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 239 ; 6.603 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;40.740 ;26.310 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 339 ;16.262 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;12.425 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 275 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1985 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 323 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1088 ; 0.999 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 436 ; 0.256 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1776 ; 1.827 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 683 ; 2.819 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 623 ; 4.585 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 223 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8457 6.6124 37.1244 REMARK 3 T TENSOR REMARK 3 T11: 0.0765 T22: 0.0735 REMARK 3 T33: 0.0848 T12: 0.0160 REMARK 3 T13: 0.0164 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.0669 L22: 0.8729 REMARK 3 L33: 3.8103 L12: -0.1582 REMARK 3 L13: -0.1074 L23: 0.1371 REMARK 3 S TENSOR REMARK 3 S11: 0.1162 S12: 0.0775 S13: -0.2132 REMARK 3 S21: -0.0400 S22: -0.0770 S23: 0.0115 REMARK 3 S31: 0.2372 S32: -0.1069 S33: -0.0392 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3RNS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000065158. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16116 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 35.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : 0.89200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.770 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS-PROPANE:NAOH, 1.8 M REMARK 280 SODIUM ACETATE, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.77100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.34200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.34200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.88550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.34200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.34200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.65650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.34200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.34200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.88550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.34200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.34200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 107.65650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.77100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 GLY A 108 REMARK 465 ASP A 109 REMARK 465 GLY A 110 REMARK 465 ASN A 111 REMARK 465 MSE A 112 REMARK 465 GLU A 113 REMARK 465 ASN A 114 REMARK 465 LYS A 115 REMARK 465 THR A 116 REMARK 465 LEU A 117 REMARK 465 LYS A 118 REMARK 465 MSE A 119 REMARK 465 LEU A 120 REMARK 465 GLU A 121 REMARK 465 SER A 122 REMARK 465 ALA A 123 REMARK 465 GLU A 224 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 3 OE1 GLU A 161 4554 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 26 CG - SE - CE ANGL. DEV. = -14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 51 94.64 -58.90 REMARK 500 ASN A 62 138.56 -170.36 REMARK 500 GLU A 70 57.12 27.02 REMARK 500 ASP A 96 -151.56 -147.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC100524 RELATED DB: TARGETDB DBREF 3RNS A 1 224 UNP C7NCX6 C7NCX6_LEPBD 1 224 SEQADV 3RNS SER A -2 UNP C7NCX6 EXPRESSION TAG SEQADV 3RNS ASN A -1 UNP C7NCX6 EXPRESSION TAG SEQADV 3RNS ALA A 0 UNP C7NCX6 EXPRESSION TAG SEQRES 1 A 227 SER ASN ALA MSE VAL LYS ILE GLU VAL ALA LYS PRO ILE SEQRES 2 A 227 ASN PHE ASN ARG LEU ILE THR SER LYS GLU ALA GLU VAL SEQRES 3 A 227 VAL SER MSE ARG ILE LEU ASN GLN PRO ASN SER TYR ILE SEQRES 4 A 227 SER LEU PHE SER LEU ALA LYS ASP GLU GLU ILE THR ALA SEQRES 5 A 227 GLU ALA MSE LEU GLY ASN ARG TYR TYR TYR CYS PHE ASN SEQRES 6 A 227 GLY ASN GLY GLU ILE PHE ILE GLU ASN ASN LYS LYS THR SEQRES 7 A 227 ILE SER ASN GLY ASP PHE LEU GLU ILE THR ALA ASN HIS SEQRES 8 A 227 ASN TYR SER ILE GLU ALA ARG ASP ASN LEU LYS LEU ILE SEQRES 9 A 227 GLU ILE GLY GLU LYS ILE GLY ASP GLY ASN MSE GLU ASN SEQRES 10 A 227 LYS THR LEU LYS MSE LEU GLU SER ALA SER ALA PHE ASN SEQRES 11 A 227 LEU ALA GLU VAL VAL GLU TYR GLN GLU GLY LYS ILE VAL SEQRES 12 A 227 SER LYS ASN LEU VAL ALA LYS PRO ASN LEU VAL MSE THR SEQRES 13 A 227 ILE MSE SER PHE TRP LYS GLY GLU SER LEU ASP PRO HIS SEQRES 14 A 227 LYS ALA PRO GLY ASP ALA LEU VAL THR VAL LEU ASP GLY SEQRES 15 A 227 GLU GLY LYS TYR TYR VAL ASP GLY LYS PRO PHE ILE VAL SEQRES 16 A 227 LYS LYS GLY GLU SER ALA VAL LEU PRO ALA ASN ILE PRO SEQRES 17 A 227 HIS ALA VAL GLU ALA GLU THR GLU ASN PHE LYS MSE LEU SEQRES 18 A 227 LEU ILE LEU VAL LYS GLU MODRES 3RNS MSE A 1 MET SELENOMETHIONINE MODRES 3RNS MSE A 26 MET SELENOMETHIONINE MODRES 3RNS MSE A 52 MET SELENOMETHIONINE MODRES 3RNS MSE A 152 MET SELENOMETHIONINE MODRES 3RNS MSE A 155 MET SELENOMETHIONINE MODRES 3RNS MSE A 217 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 26 8 HET MSE A 52 8 HET MSE A 152 13 HET MSE A 155 8 HET MSE A 217 8 HET ACT A 501 4 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 HOH *61(H2 O) HELIX 1 1 PHE A 12 ILE A 16 1 5 HELIX 2 2 ALA A 129 VAL A 132 5 4 SHEET 1 A 5 ILE A 10 ASN A 11 0 SHEET 2 A 5 GLU A 196 LEU A 200 -1 O SER A 197 N ILE A 10 SHEET 3 A 5 ASP A 171 VAL A 185 -1 N ALA A 172 O LEU A 200 SHEET 4 A 5 HIS A 206 GLU A 209 -1 O ALA A 207 N TYR A 184 SHEET 5 A 5 SER A 162 HIS A 166 -1 N HIS A 166 O HIS A 206 SHEET 1 B 5 ILE A 139 LYS A 147 0 SHEET 2 B 5 LEU A 150 PHE A 157 -1 O MSE A 152 N LEU A 144 SHEET 3 B 5 PHE A 215 VAL A 222 -1 O LEU A 219 N THR A 153 SHEET 4 B 5 ASP A 171 VAL A 185 -1 N LEU A 173 O ILE A 220 SHEET 5 B 5 LYS A 188 LYS A 193 -1 O PHE A 190 N TYR A 183 SHEET 1 C 6 VAL A 23 ASN A 30 0 SHEET 2 C 6 SER A 34 LEU A 41 -1 O LEU A 38 N MSE A 26 SHEET 3 C 6 LEU A 98 GLU A 105 -1 O GLU A 102 N SER A 37 SHEET 4 C 6 ARG A 56 ASN A 62 -1 N TYR A 59 O ILE A 101 SHEET 5 C 6 ASP A 80 ILE A 84 -1 O ILE A 84 N ARG A 56 SHEET 6 C 6 PHE A 126 ASN A 127 -1 O PHE A 126 N PHE A 81 SHEET 1 D 4 GLU A 46 ALA A 49 0 SHEET 2 D 4 TYR A 90 ALA A 94 -1 O TYR A 90 N ALA A 49 SHEET 3 D 4 ASN A 64 ILE A 69 -1 N GLU A 66 O GLU A 93 SHEET 4 D 4 LYS A 73 SER A 77 -1 O LYS A 74 N ILE A 67 LINK C ALA A 0 N MSE A 1 1555 1555 1.35 LINK C MSE A 1 N VAL A 2 1555 1555 1.34 LINK C SER A 25 N MSE A 26 1555 1555 1.32 LINK C MSE A 26 N ARG A 27 1555 1555 1.31 LINK C ALA A 51 N MSE A 52 1555 1555 1.34 LINK C MSE A 52 N LEU A 53 1555 1555 1.34 LINK C VAL A 151 N MSE A 152 1555 1555 1.34 LINK C MSE A 152 N THR A 153 1555 1555 1.32 LINK C ILE A 154 N MSE A 155 1555 1555 1.33 LINK C MSE A 155 N SER A 156 1555 1555 1.33 LINK C LYS A 216 N MSE A 217 1555 1555 1.32 LINK C MSE A 217 N LEU A 218 1555 1555 1.31 SITE 1 AC1 5 ARG A 27 SER A 37 GLU A 102 HOH A 243 SITE 2 AC1 5 HOH A 273 CRYST1 58.684 58.684 143.542 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017040 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017040 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006967 0.00000