HEADER TOXIN 25-APR-11 3ROH TITLE CRYSTAL STRUCTURE OF LEUKOTOXIN (LUKE) FROM STAPHYLOCOCCUS AUREUS TITLE 2 SUBSP. AUREUS COL. COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCOTOXIN LUKEV; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VARIANT OF LUKE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS NCTC 8325; SOURCE 3 ORGANISM_TAXID: 93061; SOURCE 4 STRAIN: NCTC 8325; SOURCE 5 GENE: HMPREF0773_11197, LUKE, LUKEV, SAOUHSC_01955; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 15B KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, LEUKOCIDIN-LIKE, LEUKOCIDIN, PORE-FORMING TOXIN, KEYWDS 3 MEMBRANE AND CELL SURFACE PROTEINS AND PEPTIDES, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,A.HALAVATY,L.SHUVALOVA,I.DUBROVSKA,J.WINSOR,F.BAGNOLI, AUTHOR 2 F.FALUGI,M.BOTTOMLEY,G.GRANDI,W.F.ANDERSON,CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 5 13-SEP-23 3ROH 1 REMARK SEQADV REVDAT 4 08-NOV-17 3ROH 1 REMARK REVDAT 3 16-MAR-16 3ROH 1 SOURCE REVDAT 2 02-MAR-16 3ROH 1 JRNL VERSN REVDAT 1 04-MAY-11 3ROH 0 JRNL AUTH S.NOCADELLO,G.MINASOV,L.SHUVALOVA,I.DUBROVSKA,E.SABINI, JRNL AUTH 2 F.BAGNOLI,G.GRANDI,W.F.ANDERSON JRNL TITL CRYSTAL STRUCTURES OF THE COMPONENTS OF THE STAPHYLOCOCCUS JRNL TITL 2 AUREUS LEUKOTOXIN ED. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 72 113 2016 JRNL REFN ISSN 0907-4449 JRNL PMID 26894539 JRNL DOI 10.1107/S2059798315023207 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 9098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 459 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 646 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2248 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 87.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 107.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.366 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.185 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.656 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2311 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1590 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3122 ; 1.358 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3874 ; 0.741 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 281 ; 1.569 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;20.219 ;24.732 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 393 ; 7.279 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ; 8.218 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 330 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2579 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 475 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1399 ; 0.805 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 574 ; 0.122 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2271 ; 1.573 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 912 ; 2.122 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 851 ; 3.540 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 138 REMARK 3 ORIGIN FOR THE GROUP (A): 25.9555 28.0320 12.5051 REMARK 3 T TENSOR REMARK 3 T11: 0.1860 T22: 0.2755 REMARK 3 T33: 0.1310 T12: -0.0346 REMARK 3 T13: -0.0216 T23: -0.1025 REMARK 3 L TENSOR REMARK 3 L11: 2.9715 L22: 7.3872 REMARK 3 L33: 3.2925 L12: 2.8993 REMARK 3 L13: -1.9268 L23: -3.3761 REMARK 3 S TENSOR REMARK 3 S11: 0.1084 S12: 0.2554 S13: 0.2138 REMARK 3 S21: 0.1828 S22: 0.0513 S23: 0.1042 REMARK 3 S31: -0.5786 S32: 0.0699 S33: -0.1597 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 139 A 215 REMARK 3 ORIGIN FOR THE GROUP (A): 29.4410 17.7603 7.5645 REMARK 3 T TENSOR REMARK 3 T11: 0.2948 T22: 0.3128 REMARK 3 T33: 0.2125 T12: -0.0290 REMARK 3 T13: 0.0525 T23: -0.2081 REMARK 3 L TENSOR REMARK 3 L11: 2.7358 L22: 10.3929 REMARK 3 L33: 4.3374 L12: 3.7049 REMARK 3 L13: -2.2382 L23: -5.5558 REMARK 3 S TENSOR REMARK 3 S11: -0.3829 S12: 0.2516 S13: -0.5909 REMARK 3 S21: -0.5494 S22: 0.0731 S23: -0.6441 REMARK 3 S31: 0.1760 S32: 0.1726 S33: 0.3098 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 216 A 311 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7318 21.2238 16.5268 REMARK 3 T TENSOR REMARK 3 T11: 0.0656 T22: 0.1936 REMARK 3 T33: 0.0911 T12: 0.0132 REMARK 3 T13: -0.0065 T23: -0.1022 REMARK 3 L TENSOR REMARK 3 L11: 2.3441 L22: 11.5243 REMARK 3 L33: 3.2594 L12: 3.2751 REMARK 3 L13: -1.2238 L23: -2.8580 REMARK 3 S TENSOR REMARK 3 S11: -0.0180 S12: 0.1467 S13: 0.2085 REMARK 3 S21: 0.2248 S22: 0.1520 S23: 0.3838 REMARK 3 S31: -0.3984 S32: -0.0719 S33: -0.1340 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ROH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000065182. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9573 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.55200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1T5R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 7MG/ML, 0.25M SODIUM REMARK 280 CHLORIDE, 0.01M TRIS, PH 8.3. SCREEN: JCSG+, D7, 0.2M LITHIUM REMARK 280 SULFATE, 0.1M TRIS, PH 8.5, 40% V/V PEG 400. VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 66.95200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.95200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.23650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 66.95200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.95200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.23650 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 66.95200 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 66.95200 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 32.23650 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 66.95200 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 66.95200 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 32.23650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 SER A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 MET A 0 REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 LYS A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 5 REMARK 465 MET A 6 REMARK 465 LEU A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 THR A 10 REMARK 465 LEU A 11 REMARK 465 SER A 12 REMARK 465 VAL A 13 REMARK 465 GLY A 14 REMARK 465 LEU A 15 REMARK 465 ILE A 16 REMARK 465 ALA A 17 REMARK 465 PRO A 18 REMARK 465 LEU A 19 REMARK 465 ALA A 20 REMARK 465 SER A 21 REMARK 465 PRO A 22 REMARK 465 ILE A 23 REMARK 465 GLN A 24 REMARK 465 GLU A 25 REMARK 465 SER A 26 REMARK 465 ARG A 27 REMARK 465 ALA A 28 REMARK 465 ASN A 29 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 250 N - CA - C ANGL. DEV. = 32.8 DEGREES REMARK 500 SER A 251 C - N - CA ANGL. DEV. = 30.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 37 -165.38 53.95 REMARK 500 ASN A 70 42.01 -67.93 REMARK 500 SER A 152 144.32 -171.26 REMARK 500 ILE A 153 30.06 -97.07 REMARK 500 ASN A 156 62.50 -150.31 REMARK 500 GLN A 169 40.73 -143.76 REMARK 500 LYS A 170 127.94 -34.66 REMARK 500 GLN A 179 141.48 -170.45 REMARK 500 ASN A 191 -78.12 -118.46 REMARK 500 SER A 235 -71.83 -90.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 250 SER A 251 -135.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 313 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP00812 RELATED DB: TARGETDB DBREF 3ROH A 6 311 UNP Q2FXB0 LUKEV_STAA8 1 306 SEQADV 3ROH MET A -17 UNP Q2FXB0 EXPRESSION TAG SEQADV 3ROH GLY A -16 UNP Q2FXB0 EXPRESSION TAG SEQADV 3ROH SER A -15 UNP Q2FXB0 EXPRESSION TAG SEQADV 3ROH SER A -14 UNP Q2FXB0 EXPRESSION TAG SEQADV 3ROH HIS A -13 UNP Q2FXB0 EXPRESSION TAG SEQADV 3ROH HIS A -12 UNP Q2FXB0 EXPRESSION TAG SEQADV 3ROH HIS A -11 UNP Q2FXB0 EXPRESSION TAG SEQADV 3ROH HIS A -10 UNP Q2FXB0 EXPRESSION TAG SEQADV 3ROH HIS A -9 UNP Q2FXB0 EXPRESSION TAG SEQADV 3ROH HIS A -8 UNP Q2FXB0 EXPRESSION TAG SEQADV 3ROH GLU A -7 UNP Q2FXB0 EXPRESSION TAG SEQADV 3ROH ASN A -6 UNP Q2FXB0 EXPRESSION TAG SEQADV 3ROH LEU A -5 UNP Q2FXB0 EXPRESSION TAG SEQADV 3ROH TYR A -4 UNP Q2FXB0 EXPRESSION TAG SEQADV 3ROH PHE A -3 UNP Q2FXB0 EXPRESSION TAG SEQADV 3ROH GLN A -2 UNP Q2FXB0 EXPRESSION TAG SEQADV 3ROH GLY A -1 UNP Q2FXB0 EXPRESSION TAG SEQADV 3ROH MET A 0 UNP Q2FXB0 EXPRESSION TAG SEQADV 3ROH MET A 1 UNP Q2FXB0 EXPRESSION TAG SEQADV 3ROH PHE A 2 UNP Q2FXB0 EXPRESSION TAG SEQADV 3ROH LYS A 3 UNP Q2FXB0 EXPRESSION TAG SEQADV 3ROH LYS A 4 UNP Q2FXB0 EXPRESSION TAG SEQADV 3ROH LYS A 5 UNP Q2FXB0 EXPRESSION TAG SEQRES 1 A 329 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLU ASN LEU SEQRES 2 A 329 TYR PHE GLN GLY MET MET PHE LYS LYS LYS MET LEU ALA SEQRES 3 A 329 ALA THR LEU SER VAL GLY LEU ILE ALA PRO LEU ALA SER SEQRES 4 A 329 PRO ILE GLN GLU SER ARG ALA ASN THR ASN ILE GLU ASN SEQRES 5 A 329 ILE GLY ASP GLY ALA GLU VAL ILE LYS ARG THR GLU ASP SEQRES 6 A 329 VAL SER SER LYS LYS TRP GLY VAL THR GLN ASN VAL GLN SEQRES 7 A 329 PHE ASP PHE VAL LYS ASP LYS LYS TYR ASN LYS ASP ALA SEQRES 8 A 329 LEU ILE VAL LYS MET GLN GLY PHE ILE ASN SER ARG THR SEQRES 9 A 329 SER PHE SER ASP VAL LYS GLY SER GLY TYR GLU LEU THR SEQRES 10 A 329 LYS ARG MET ILE TRP PRO PHE GLN TYR ASN ILE GLY LEU SEQRES 11 A 329 THR THR LYS ASP PRO ASN VAL SER LEU ILE ASN TYR LEU SEQRES 12 A 329 PRO LYS ASN LYS ILE GLU THR THR ASP VAL GLY GLN THR SEQRES 13 A 329 LEU GLY TYR ASN ILE GLY GLY ASN PHE GLN SER ALA PRO SEQRES 14 A 329 SER ILE GLY GLY ASN GLY SER PHE ASN TYR SER LYS THR SEQRES 15 A 329 ILE SER TYR THR GLN LYS SER TYR VAL SER GLU VAL ASP SEQRES 16 A 329 LYS GLN ASN SER LYS SER VAL LYS TRP GLY VAL LYS ALA SEQRES 17 A 329 ASN GLU PHE VAL THR PRO ASP GLY LYS LYS SER ALA HIS SEQRES 18 A 329 ASP ARG TYR LEU PHE VAL GLN SER PRO ASN GLY PRO THR SEQRES 19 A 329 GLY SER ALA ARG GLU TYR PHE ALA PRO ASP ASN GLN LEU SEQRES 20 A 329 PRO PRO LEU VAL GLN SER GLY PHE ASN PRO SER PHE ILE SEQRES 21 A 329 THR THR LEU SER HIS GLU LYS GLY SER SER ASP THR SER SEQRES 22 A 329 GLU PHE GLU ILE SER TYR GLY ARG ASN LEU ASP ILE THR SEQRES 23 A 329 TYR ALA THR LEU PHE PRO ARG THR GLY ILE TYR ALA GLU SEQRES 24 A 329 ARG LYS HIS ASN ALA PHE VAL ASN ARG ASN PHE VAL VAL SEQRES 25 A 329 ARG TYR GLU VAL ASN TRP LYS THR HIS GLU ILE LYS VAL SEQRES 26 A 329 LYS GLY HIS ASN HET PGE A 312 10 HET CL A 313 1 HET CL A 314 1 HETNAM PGE TRIETHYLENE GLYCOL HETNAM CL CHLORIDE ION FORMUL 2 PGE C6 H14 O4 FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *26(H2 O) HELIX 1 1 ALA A 219 PHE A 223 5 5 HELIX 2 2 PRO A 225 LEU A 229 5 5 HELIX 3 3 PRO A 230 SER A 235 1 6 SHEET 1 A 6 ILE A 32 GLY A 36 0 SHEET 2 A 6 ALA A 39 SER A 50 -1 O VAL A 41 N GLU A 33 SHEET 3 A 6 VAL A 55 ASP A 66 -1 O GLN A 57 N VAL A 48 SHEET 4 A 6 ASP A 72 ASN A 83 -1 O ILE A 75 N ASP A 62 SHEET 5 A 6 SER A 240 HIS A 247 -1 O LEU A 245 N LEU A 74 SHEET 6 A 6 VAL A 119 LEU A 125 -1 N SER A 120 O SER A 246 SHEET 1 B 5 ILE A 32 GLY A 36 0 SHEET 2 B 5 ALA A 39 SER A 50 -1 O VAL A 41 N GLU A 33 SHEET 3 B 5 VAL A 55 ASP A 66 -1 O GLN A 57 N VAL A 48 SHEET 4 B 5 ASP A 72 ASN A 83 -1 O ILE A 75 N ASP A 62 SHEET 5 B 5 GLY A 236 PHE A 237 -1 O PHE A 237 N ILE A 82 SHEET 1 C 4 SER A 87 ASP A 90 0 SHEET 2 C 4 THR A 99 THR A 114 -1 O ARG A 101 N SER A 89 SHEET 3 C 4 SER A 183 ALA A 190 -1 O TRP A 186 N ILE A 110 SHEET 4 C 4 TYR A 172 GLN A 179 -1 N VAL A 173 O LYS A 189 SHEET 1 D 5 SER A 87 ASP A 90 0 SHEET 2 D 5 THR A 99 THR A 114 -1 O ARG A 101 N SER A 89 SHEET 3 D 5 THR A 254 PHE A 273 -1 O THR A 268 N MET A 102 SHEET 4 D 5 GLY A 277 ASN A 299 -1 O TYR A 279 N THR A 271 SHEET 5 D 5 GLU A 304 HIS A 310 -1 O GLY A 309 N ARG A 295 SHEET 1 E 3 ASN A 146 ALA A 150 0 SHEET 2 E 3 ASP A 134 ASN A 142 -1 N GLY A 140 O GLN A 148 SHEET 3 E 3 TYR A 161 THR A 168 -1 O LYS A 163 N LEU A 139 SHEET 1 F 2 GLU A 192 VAL A 194 0 SHEET 2 F 2 LYS A 199 SER A 201 -1 O LYS A 200 N PHE A 193 CISPEP 1 LEU A 125 PRO A 126 0 -0.38 CISPEP 2 GLY A 155 ASN A 156 0 0.26 SITE 1 AC1 3 GLY A 95 TYR A 96 GLU A 281 SITE 1 AC2 2 LYS A 77 THR A 164 CRYST1 133.904 133.904 64.473 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007468 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007468 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015510 0.00000