HEADER IMMUNE SYSTEM 26-APR-11 3RP1 TITLE CRYSTAL STRUCTURE OF HUMAN LAIR-1 IN C2 SPACE GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUKOCYTE-ASSOCIATED IMMUNOGLOBULIN-LIKE RECEPTOR 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN (UNP RESIDUES 22-123); COMPND 5 SYNONYM: LAIR-1, HLAIR1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD305, LAIR-1, LAIR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS STRUCTURAL GENOMICS, COLLAGEN RECEPTOR, NEW YORK STRUCTURAL GENOMICS KEYWDS 2 RESEARCH CONSORTIUM, NYSGRC, PSI-BIOLOGY, IG-LIKE, IMMUNE SYSTEM, KEYWDS 3 COLLAGEN-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR P.SAMPATHKUMAR,U.A.RAMAGOPAL,Q.YAN,R.TORO,S.NATHENSON,J.BONANNO, AUTHOR 2 S.C.ALMO,NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 3 20-NOV-24 3RP1 1 REMARK REVDAT 2 13-SEP-23 3RP1 1 SEQADV REVDAT 1 15-JUN-11 3RP1 0 JRNL AUTH P.SAMPATHKUMAR,U.A.RAMAGOPAL,Q.YAN,R.TORO,S.NATHENSON, JRNL AUTH 2 J.BONANNO,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF HUMAN LAIR-1 IN C2 SPACE GROUP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 11978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.700 REMARK 3 FREE R VALUE TEST SET COUNT : 922 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 796 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2997 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.410 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.317 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 32.562 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.866 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3081 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2135 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4205 ; 1.436 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5176 ; 0.809 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 386 ; 6.979 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;33.523 ;22.899 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 466 ;15.223 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;17.238 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 456 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3460 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 633 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1951 ; 0.442 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 761 ; 0.086 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3171 ; 0.901 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1130 ; 1.503 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1033 ; 2.599 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 121 REMARK 3 RESIDUE RANGE : A 124 A 130 REMARK 3 ORIGIN FOR THE GROUP (A): 30.2756 -2.5288 7.2052 REMARK 3 T TENSOR REMARK 3 T11: 0.0927 T22: 0.0699 REMARK 3 T33: 0.1542 T12: 0.0451 REMARK 3 T13: 0.0039 T23: 0.0308 REMARK 3 L TENSOR REMARK 3 L11: 3.9757 L22: 2.6172 REMARK 3 L33: 4.4138 L12: 1.7921 REMARK 3 L13: 1.3470 L23: 1.4601 REMARK 3 S TENSOR REMARK 3 S11: -0.0325 S12: 0.0812 S13: -0.0226 REMARK 3 S21: -0.3436 S22: -0.0132 S23: -0.0715 REMARK 3 S31: 0.0893 S32: 0.4221 S33: 0.0457 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 26 B 122 REMARK 3 RESIDUE RANGE : B 124 B 135 REMARK 3 ORIGIN FOR THE GROUP (A): 15.4405 -8.7302 24.6636 REMARK 3 T TENSOR REMARK 3 T11: 0.0639 T22: 0.1501 REMARK 3 T33: 0.0790 T12: -0.0001 REMARK 3 T13: -0.0057 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 2.6530 L22: 7.7034 REMARK 3 L33: 3.6009 L12: 2.5221 REMARK 3 L13: 0.3584 L23: 1.1724 REMARK 3 S TENSOR REMARK 3 S11: -0.1571 S12: -0.0319 S13: -0.0623 REMARK 3 S21: 0.2797 S22: -0.0149 S23: -0.0048 REMARK 3 S31: 0.2279 S32: -0.2728 S33: 0.1720 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 25 C 122 REMARK 3 RESIDUE RANGE : C 124 C 131 REMARK 3 ORIGIN FOR THE GROUP (A): 12.2730 12.4625 9.4128 REMARK 3 T TENSOR REMARK 3 T11: 0.1394 T22: 0.1627 REMARK 3 T33: 0.1422 T12: 0.0863 REMARK 3 T13: -0.0334 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 4.3001 L22: 4.2987 REMARK 3 L33: 4.0257 L12: 2.5077 REMARK 3 L13: -0.4497 L23: -0.3108 REMARK 3 S TENSOR REMARK 3 S11: 0.1268 S12: 0.2102 S13: 0.2463 REMARK 3 S21: 0.0774 S22: 0.0851 S23: 0.2904 REMARK 3 S31: -0.5349 S32: -0.4511 S33: -0.2120 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 26 D 122 REMARK 3 RESIDUE RANGE : D 124 D 129 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7679 6.5936 -13.1777 REMARK 3 T TENSOR REMARK 3 T11: 0.1246 T22: 0.2061 REMARK 3 T33: 0.1076 T12: 0.0589 REMARK 3 T13: -0.0072 T23: 0.0406 REMARK 3 L TENSOR REMARK 3 L11: 4.7150 L22: 3.9609 REMARK 3 L33: 4.6479 L12: 2.0070 REMARK 3 L13: -0.5398 L23: 0.6536 REMARK 3 S TENSOR REMARK 3 S11: 0.0241 S12: 0.5086 S13: -0.0538 REMARK 3 S21: 0.0445 S22: -0.0145 S23: 0.0874 REMARK 3 S31: 0.2347 S32: -0.5076 S33: -0.0097 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3RP1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000065202. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0810 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12005 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.63900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3KGR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM CALCIUM CHOLORIDE, 28% PEG400, REMARK 280 100MM HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.55850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.63050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.55850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.63050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 21 REMARK 465 GLN A 22 REMARK 465 GLU A 23 REMARK 465 GLU A 24 REMARK 465 ASP A 25 REMARK 465 GLU A 122 REMARK 465 THR A 123 REMARK 465 MET B 21 REMARK 465 GLN B 22 REMARK 465 GLU B 23 REMARK 465 GLU B 24 REMARK 465 ASP B 25 REMARK 465 THR B 123 REMARK 465 MET C 21 REMARK 465 GLN C 22 REMARK 465 GLU C 23 REMARK 465 GLU C 24 REMARK 465 THR C 123 REMARK 465 MET D 21 REMARK 465 GLN D 22 REMARK 465 GLU D 23 REMARK 465 GLU D 24 REMARK 465 ASP D 25 REMARK 465 THR D 123 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 65 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 ARG B 65 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 108 CG CD CE NZ REMARK 470 GLN B 112 CG CD OE1 NE2 REMARK 470 GLU B 122 CG CD OE1 OE2 REMARK 470 ARG C 65 CG CD NE CZ NH1 NH2 REMARK 470 SER C 75 OG REMARK 470 GLU C 81 CG CD OE1 OE2 REMARK 470 GLU C 93 CG CD OE1 OE2 REMARK 470 LYS C 108 CG CD CE NZ REMARK 470 GLU C 122 CG CD OE1 OE2 REMARK 470 LEU D 26 CG CD1 CD2 REMARK 470 GLU D 81 CG CD OE1 OE2 REMARK 470 GLU D 111 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 64 -73.00 -92.27 REMARK 500 LEU B 41 137.38 -38.59 REMARK 500 ASP B 73 58.43 -95.20 REMARK 500 SER B 90 72.01 44.78 REMARK 500 SER C 43 -169.10 -105.43 REMARK 500 SER C 64 -74.17 -70.45 REMARK 500 SER C 66 -8.17 72.72 REMARK 500 SER C 80 -47.25 74.31 REMARK 500 ASP C 114 157.60 -40.83 REMARK 500 LEU D 41 133.90 -39.18 REMARK 500 ASP D 73 80.48 -68.26 REMARK 500 SER D 82 142.09 178.97 REMARK 500 ARG D 100 142.20 -171.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-005977 RELATED DB: TARGETDB DBREF 3RP1 A 22 123 UNP Q6GTX8 LAIR1_HUMAN 22 123 DBREF 3RP1 B 22 123 UNP Q6GTX8 LAIR1_HUMAN 22 123 DBREF 3RP1 C 22 123 UNP Q6GTX8 LAIR1_HUMAN 22 123 DBREF 3RP1 D 22 123 UNP Q6GTX8 LAIR1_HUMAN 22 123 SEQADV 3RP1 MET A 21 UNP Q6GTX8 INITIATING METHIONINE SEQADV 3RP1 MET B 21 UNP Q6GTX8 INITIATING METHIONINE SEQADV 3RP1 MET C 21 UNP Q6GTX8 INITIATING METHIONINE SEQADV 3RP1 MET D 21 UNP Q6GTX8 INITIATING METHIONINE SEQRES 1 A 103 MET GLN GLU GLU ASP LEU PRO ARG PRO SER ILE SER ALA SEQRES 2 A 103 GLU PRO GLY THR VAL ILE PRO LEU GLY SER HIS VAL THR SEQRES 3 A 103 PHE VAL CYS ARG GLY PRO VAL GLY VAL GLN THR PHE ARG SEQRES 4 A 103 LEU GLU ARG GLU SER ARG SER THR TYR ASN ASP THR GLU SEQRES 5 A 103 ASP VAL SER GLN ALA SER PRO SER GLU SER GLU ALA ARG SEQRES 6 A 103 PHE ARG ILE ASP SER VAL SER GLU GLY ASN ALA GLY PRO SEQRES 7 A 103 TYR ARG CYS ILE TYR TYR LYS PRO PRO LYS TRP SER GLU SEQRES 8 A 103 GLN SER ASP TYR LEU GLU LEU LEU VAL LYS GLU THR SEQRES 1 B 103 MET GLN GLU GLU ASP LEU PRO ARG PRO SER ILE SER ALA SEQRES 2 B 103 GLU PRO GLY THR VAL ILE PRO LEU GLY SER HIS VAL THR SEQRES 3 B 103 PHE VAL CYS ARG GLY PRO VAL GLY VAL GLN THR PHE ARG SEQRES 4 B 103 LEU GLU ARG GLU SER ARG SER THR TYR ASN ASP THR GLU SEQRES 5 B 103 ASP VAL SER GLN ALA SER PRO SER GLU SER GLU ALA ARG SEQRES 6 B 103 PHE ARG ILE ASP SER VAL SER GLU GLY ASN ALA GLY PRO SEQRES 7 B 103 TYR ARG CYS ILE TYR TYR LYS PRO PRO LYS TRP SER GLU SEQRES 8 B 103 GLN SER ASP TYR LEU GLU LEU LEU VAL LYS GLU THR SEQRES 1 C 103 MET GLN GLU GLU ASP LEU PRO ARG PRO SER ILE SER ALA SEQRES 2 C 103 GLU PRO GLY THR VAL ILE PRO LEU GLY SER HIS VAL THR SEQRES 3 C 103 PHE VAL CYS ARG GLY PRO VAL GLY VAL GLN THR PHE ARG SEQRES 4 C 103 LEU GLU ARG GLU SER ARG SER THR TYR ASN ASP THR GLU SEQRES 5 C 103 ASP VAL SER GLN ALA SER PRO SER GLU SER GLU ALA ARG SEQRES 6 C 103 PHE ARG ILE ASP SER VAL SER GLU GLY ASN ALA GLY PRO SEQRES 7 C 103 TYR ARG CYS ILE TYR TYR LYS PRO PRO LYS TRP SER GLU SEQRES 8 C 103 GLN SER ASP TYR LEU GLU LEU LEU VAL LYS GLU THR SEQRES 1 D 103 MET GLN GLU GLU ASP LEU PRO ARG PRO SER ILE SER ALA SEQRES 2 D 103 GLU PRO GLY THR VAL ILE PRO LEU GLY SER HIS VAL THR SEQRES 3 D 103 PHE VAL CYS ARG GLY PRO VAL GLY VAL GLN THR PHE ARG SEQRES 4 D 103 LEU GLU ARG GLU SER ARG SER THR TYR ASN ASP THR GLU SEQRES 5 D 103 ASP VAL SER GLN ALA SER PRO SER GLU SER GLU ALA ARG SEQRES 6 D 103 PHE ARG ILE ASP SER VAL SER GLU GLY ASN ALA GLY PRO SEQRES 7 D 103 TYR ARG CYS ILE TYR TYR LYS PRO PRO LYS TRP SER GLU SEQRES 8 D 103 GLN SER ASP TYR LEU GLU LEU LEU VAL LYS GLU THR FORMUL 5 HOH *33(H2 O) HELIX 1 1 SER A 92 ALA A 96 5 5 HELIX 2 2 SER B 92 ALA B 96 5 5 HELIX 3 3 SER C 92 ALA C 96 5 5 HELIX 4 4 SER D 92 ALA D 96 5 5 SHEET 1 A 4 SER A 30 GLU A 34 0 SHEET 2 A 4 VAL A 45 GLY A 51 -1 O THR A 46 N GLU A 34 SHEET 3 A 4 GLU A 81 ILE A 88 -1 O SER A 82 N GLY A 51 SHEET 4 A 4 VAL A 74 SER A 78 -1 N SER A 75 O GLU A 83 SHEET 1 B 5 VAL A 38 ILE A 39 0 SHEET 2 B 5 LEU A 116 VAL A 120 1 O LEU A 119 N ILE A 39 SHEET 3 B 5 GLY A 97 LYS A 105 -1 N TYR A 99 O LEU A 116 SHEET 4 B 5 THR A 57 ARG A 62 -1 N ARG A 59 O ILE A 102 SHEET 5 B 5 TYR A 68 THR A 71 -1 O ASN A 69 N LEU A 60 SHEET 1 C 4 VAL A 38 ILE A 39 0 SHEET 2 C 4 LEU A 116 VAL A 120 1 O LEU A 119 N ILE A 39 SHEET 3 C 4 GLY A 97 LYS A 105 -1 N TYR A 99 O LEU A 116 SHEET 4 C 4 LYS A 108 TRP A 109 -1 O LYS A 108 N LYS A 105 SHEET 1 D 4 SER B 30 GLU B 34 0 SHEET 2 D 4 VAL B 45 GLY B 51 -1 O ARG B 50 N SER B 30 SHEET 3 D 4 SER B 82 ILE B 88 -1 O ILE B 88 N VAL B 45 SHEET 4 D 4 SER B 75 GLN B 76 -1 N SER B 75 O GLU B 83 SHEET 1 E 5 VAL B 38 PRO B 40 0 SHEET 2 E 5 LEU B 116 LYS B 121 1 O LYS B 121 N ILE B 39 SHEET 3 E 5 GLY B 97 LYS B 105 -1 N TYR B 99 O LEU B 116 SHEET 4 E 5 THR B 57 ARG B 62 -1 N GLU B 61 O ARG B 100 SHEET 5 E 5 TYR B 68 THR B 71 -1 O THR B 71 N PHE B 58 SHEET 1 F 4 VAL B 38 PRO B 40 0 SHEET 2 F 4 LEU B 116 LYS B 121 1 O LYS B 121 N ILE B 39 SHEET 3 F 4 GLY B 97 LYS B 105 -1 N TYR B 99 O LEU B 116 SHEET 4 F 4 LYS B 108 TRP B 109 -1 O LYS B 108 N LYS B 105 SHEET 1 G 4 SER C 30 GLU C 34 0 SHEET 2 G 4 VAL C 45 PRO C 52 -1 O THR C 46 N GLU C 34 SHEET 3 G 4 GLU C 81 ILE C 88 -1 O ILE C 88 N VAL C 45 SHEET 4 G 4 SER C 75 GLN C 76 -1 N SER C 75 O GLU C 83 SHEET 1 H 5 VAL C 38 PRO C 40 0 SHEET 2 H 5 LEU C 116 LYS C 121 1 O LYS C 121 N ILE C 39 SHEET 3 H 5 GLY C 97 LYS C 105 -1 N TYR C 99 O LEU C 116 SHEET 4 H 5 THR C 57 ARG C 62 -1 N GLU C 61 O ARG C 100 SHEET 5 H 5 TYR C 68 THR C 71 -1 O THR C 71 N PHE C 58 SHEET 1 I 4 VAL C 38 PRO C 40 0 SHEET 2 I 4 LEU C 116 LYS C 121 1 O LYS C 121 N ILE C 39 SHEET 3 I 4 GLY C 97 LYS C 105 -1 N TYR C 99 O LEU C 116 SHEET 4 I 4 LYS C 108 TRP C 109 -1 O LYS C 108 N LYS C 105 SHEET 1 J 3 SER D 30 GLU D 34 0 SHEET 2 J 3 VAL D 45 ARG D 50 -1 O VAL D 48 N SER D 32 SHEET 3 J 3 GLU D 83 ILE D 88 -1 O ILE D 88 N VAL D 45 SHEET 1 K 5 VAL D 38 ILE D 39 0 SHEET 2 K 5 LEU D 116 VAL D 120 1 O LEU D 119 N ILE D 39 SHEET 3 K 5 GLY D 97 LYS D 105 -1 N GLY D 97 O LEU D 118 SHEET 4 K 5 THR D 57 ARG D 62 -1 N ARG D 59 O ILE D 102 SHEET 5 K 5 ASN D 69 THR D 71 -1 O ASN D 69 N LEU D 60 SHEET 1 L 4 VAL D 38 ILE D 39 0 SHEET 2 L 4 LEU D 116 VAL D 120 1 O LEU D 119 N ILE D 39 SHEET 3 L 4 GLY D 97 LYS D 105 -1 N GLY D 97 O LEU D 118 SHEET 4 L 4 LYS D 108 TRP D 109 -1 O LYS D 108 N LYS D 105 SSBOND 1 CYS A 49 CYS A 101 1555 1555 2.05 SSBOND 2 CYS B 49 CYS B 101 1555 1555 2.03 SSBOND 3 CYS C 49 CYS C 101 1555 1555 2.04 SSBOND 4 CYS D 49 CYS D 101 1555 1555 2.05 CISPEP 1 GLU A 34 PRO A 35 0 -3.28 CISPEP 2 PRO A 106 PRO A 107 0 12.15 CISPEP 3 GLU B 34 PRO B 35 0 5.56 CISPEP 4 PRO B 106 PRO B 107 0 7.60 CISPEP 5 GLU C 34 PRO C 35 0 3.71 CISPEP 6 PRO C 106 PRO C 107 0 9.90 CISPEP 7 GLU D 34 PRO D 35 0 4.52 CISPEP 8 PRO D 106 PRO D 107 0 8.41 CRYST1 91.117 77.261 64.940 90.00 120.18 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010975 0.000000 0.006382 0.00000 SCALE2 0.000000 0.012943 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017813 0.00000