HEADER TRANSFERASE 26-APR-11 3RP9 TITLE CRYSTAL STRUCTURE OF THE APO MAPK FROM TOXOPLASMA GONDII, 25.M01780 OR TITLE 2 TGME49_007820 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 92-548; COMPND 5 SYNONYM: MAPK, MAP KINASE; COMPND 6 EC: 2.7.11.24; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 508771; SOURCE 4 STRAIN: ME49; SOURCE 5 GENE: 25.M01780, TGME49_007820; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15 KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.K.WERNIMONT,L.CROMBET,J.C.PIZARRO,G.J.CROWTHER,W.C.VAN VOORHIS, AUTHOR 2 C.H.ARROWSMITH,C.BOUNTRA,J.WEIGELT,A.M.EDWARDS,R.HUI,Y.H.LIN, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 13-SEP-23 3RP9 1 REMARK SEQADV REVDAT 2 08-NOV-17 3RP9 1 REMARK REVDAT 1 15-JUN-11 3RP9 0 JRNL AUTH A.K.WERNIMONT,L.CROMBET,J.C.PIZARRO,G.J.CROWTHER, JRNL AUTH 2 W.C.VAN VOORHIS,C.H.ARROWSMITH,C.BOUNTRA,J.WEIGELT, JRNL AUTH 3 A.M.EDWARDS,R.HUI,Y.H.LIN JRNL TITL CRYSTAL STRUCTURE OF THE APO MAPK FROM TOXOPLASMA GONDII, JRNL TITL 2 25.M01780 OR TGME49_007820 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 16264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 823 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1131 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.4160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2827 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : 1.51000 REMARK 3 B33 (A**2) : -2.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.88000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.438 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.253 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.203 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.291 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2961 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2014 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4028 ; 1.223 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4887 ; 0.860 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 358 ; 5.271 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;34.520 ;23.600 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 503 ;15.347 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;14.657 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 452 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3294 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 616 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1795 ; 0.486 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 707 ; 0.101 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2914 ; 0.918 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1166 ; 1.427 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1114 ; 2.266 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 58 REMARK 3 ORIGIN FOR THE GROUP (A): -7.7344 -3.3551 18.7420 REMARK 3 T TENSOR REMARK 3 T11: 0.7326 T22: 0.7932 REMARK 3 T33: 0.4464 T12: -0.0989 REMARK 3 T13: 0.1160 T23: -0.1167 REMARK 3 L TENSOR REMARK 3 L11: 1.1465 L22: 1.6230 REMARK 3 L33: 24.5976 L12: -1.1472 REMARK 3 L13: 5.0831 L23: -6.0501 REMARK 3 S TENSOR REMARK 3 S11: -0.0843 S12: -0.4046 S13: -0.0152 REMARK 3 S21: 0.0261 S22: -0.1531 S23: -0.0559 REMARK 3 S31: -0.0202 S32: -0.8565 S33: 0.2373 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 59 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): -10.4021 -8.2689 11.3815 REMARK 3 T TENSOR REMARK 3 T11: 0.7433 T22: 0.8527 REMARK 3 T33: 0.2221 T12: -0.3136 REMARK 3 T13: -0.0863 T23: 0.1914 REMARK 3 L TENSOR REMARK 3 L11: 29.4686 L22: 40.0811 REMARK 3 L33: 7.1333 L12: -9.9090 REMARK 3 L13: -4.3813 L23: 16.8984 REMARK 3 S TENSOR REMARK 3 S11: 1.3042 S12: -3.8055 S13: -1.9751 REMARK 3 S21: 2.4807 S22: -1.4899 S23: 0.2069 REMARK 3 S31: 1.0087 S32: -0.6552 S33: 0.1857 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 214 REMARK 3 ORIGIN FOR THE GROUP (A): -3.0479 -8.9268 -2.4027 REMARK 3 T TENSOR REMARK 3 T11: 0.1008 T22: 0.0863 REMARK 3 T33: 0.0414 T12: 0.0188 REMARK 3 T13: 0.0136 T23: 0.0498 REMARK 3 L TENSOR REMARK 3 L11: 2.2642 L22: 2.6974 REMARK 3 L33: 2.3516 L12: 0.6041 REMARK 3 L13: 0.5687 L23: 1.5151 REMARK 3 S TENSOR REMARK 3 S11: 0.0240 S12: -0.1549 S13: 0.0442 REMARK 3 S21: 0.4210 S22: -0.0050 S23: 0.0571 REMARK 3 S31: 0.0894 S32: -0.0521 S33: -0.0190 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 215 A 248 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1278 -21.8916 -5.7355 REMARK 3 T TENSOR REMARK 3 T11: 0.3973 T22: 0.7054 REMARK 3 T33: 0.4321 T12: -0.0093 REMARK 3 T13: -0.0108 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 27.0844 L22: 2.9268 REMARK 3 L33: 0.0147 L12: 8.7634 REMARK 3 L13: 0.3665 L23: 0.0903 REMARK 3 S TENSOR REMARK 3 S11: 0.7410 S12: -3.0670 S13: -1.2830 REMARK 3 S21: 0.2966 S22: -0.7853 S23: -0.4704 REMARK 3 S31: 0.0032 S32: -0.1003 S33: 0.0443 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 249 A 337 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9458 -25.9331 -14.2100 REMARK 3 T TENSOR REMARK 3 T11: 0.1335 T22: 0.0916 REMARK 3 T33: 0.0696 T12: 0.0041 REMARK 3 T13: -0.0172 T23: 0.0478 REMARK 3 L TENSOR REMARK 3 L11: 3.4797 L22: 2.9870 REMARK 3 L33: 2.9097 L12: -0.1246 REMARK 3 L13: -0.4934 L23: 0.9553 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: -0.0978 S13: -0.4132 REMARK 3 S21: 0.0684 S22: 0.0158 S23: -0.0028 REMARK 3 S31: 0.5224 S32: 0.1124 S33: -0.0155 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 338 A 355 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8380 -27.2782 -22.9654 REMARK 3 T TENSOR REMARK 3 T11: 0.3089 T22: 0.3332 REMARK 3 T33: 0.3354 T12: 0.1226 REMARK 3 T13: 0.1019 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 15.4718 L22: 5.5731 REMARK 3 L33: 7.5874 L12: -3.2299 REMARK 3 L13: -0.7490 L23: 6.2333 REMARK 3 S TENSOR REMARK 3 S11: -0.5104 S12: 0.5315 S13: 0.8797 REMARK 3 S21: -0.0827 S22: 0.6060 S23: -0.3050 REMARK 3 S31: -0.1748 S32: 0.8278 S33: -0.0956 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 356 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): -7.4234 -22.6312 -23.4401 REMARK 3 T TENSOR REMARK 3 T11: 0.1646 T22: 0.2131 REMARK 3 T33: 0.1178 T12: -0.0491 REMARK 3 T13: -0.0242 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 2.0589 L22: 2.8136 REMARK 3 L33: 2.8723 L12: -0.3829 REMARK 3 L13: 1.0569 L23: 0.8663 REMARK 3 S TENSOR REMARK 3 S11: 0.0711 S12: 0.4399 S13: -0.2931 REMARK 3 S21: -0.3865 S22: -0.0174 S23: 0.0983 REMARK 3 S31: 0.2736 S32: -0.1044 S33: -0.0537 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 402 A 450 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4476 1.4939 -2.5166 REMARK 3 T TENSOR REMARK 3 T11: 0.1639 T22: 0.0732 REMARK 3 T33: 0.1751 T12: 0.0122 REMARK 3 T13: -0.0050 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 3.0125 L22: 2.8167 REMARK 3 L33: 3.9134 L12: 0.9450 REMARK 3 L13: 1.2015 L23: 2.0124 REMARK 3 S TENSOR REMARK 3 S11: -0.0333 S12: 0.0651 S13: 0.5271 REMARK 3 S21: 0.0887 S22: 0.1996 S23: -0.1990 REMARK 3 S31: -0.1832 S32: 0.4053 S33: -0.1663 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3RP9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-11. REMARK 100 THE DEPOSITION ID IS D_1000065209. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00724 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17378 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 33.732 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.410 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3NIE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.1 M AMMONIUM SULFATE, REMARK 280 0.1 M BIS-TRIS, PH 5.5, 10 MM MAGNESIUM CHLORIDE, 10 MM TCEP, REMARK 280 CRYOPROTECTANT: 15% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.72700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 HIS A 4 REMARK 465 GLU A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 GLN A 10 REMARK 465 GLN A 11 REMARK 465 HIS A 12 REMARK 465 ASN A 13 REMARK 465 SER A 14 REMARK 465 GLY A 15 REMARK 465 THR A 16 REMARK 465 GLN A 17 REMARK 465 HIS A 18 REMARK 465 THR A 19 REMARK 465 VAL A 20 REMARK 465 SER A 21 REMARK 465 GLY A 22 REMARK 465 SER A 23 REMARK 465 GLN A 24 REMARK 465 GLN A 25 REMARK 465 GLU A 26 REMARK 465 GLY A 27 REMARK 465 GLN A 28 REMARK 465 GLN A 29 REMARK 465 ARG A 30 REMARK 465 LYS A 31 REMARK 465 GLN A 32 REMARK 465 HIS A 33 REMARK 465 HIS A 34 REMARK 465 SER A 35 REMARK 465 SER A 36 REMARK 465 LYS A 37 REMARK 465 PRO A 38 REMARK 465 THR A 39 REMARK 465 ALA A 40 REMARK 465 SER A 41 REMARK 465 MET A 42 REMARK 465 PRO A 43 REMARK 465 ARG A 44 REMARK 465 ILE A 61 REMARK 465 GLY A 62 REMARK 465 THR A 63 REMARK 465 GLY A 64 REMARK 465 SER A 65 REMARK 465 TYR A 66 REMARK 465 GLY A 67 REMARK 465 GLU A 77 REMARK 465 LYS A 78 REMARK 465 ILE A 218 REMARK 465 SER A 219 REMARK 465 PRO A 220 REMARK 465 ARG A 221 REMARK 465 GLU A 222 REMARK 465 ASP A 223 REMARK 465 ASP A 224 REMARK 465 MET A 225 REMARK 465 ASN A 226 REMARK 465 LEU A 227 REMARK 465 VAL A 228 REMARK 465 THR A 229 REMARK 465 PHE A 230 REMARK 465 PRO A 231 REMARK 465 HIS A 232 REMARK 465 THR A 233 REMARK 465 LYS A 234 REMARK 465 ASN A 235 REMARK 465 LEU A 236 REMARK 465 LYS A 237 REMARK 465 ARG A 238 REMARK 465 GLN A 239 REMARK 465 LEU A 240 REMARK 465 THR A 241 REMARK 465 GLY A 242 REMARK 465 HIS A 243 REMARK 465 VAL A 244 REMARK 465 GLY A 297 REMARK 465 SER A 298 REMARK 465 SER A 299 REMARK 465 CYS A 300 REMARK 465 PHE A 301 REMARK 465 PRO A 302 REMARK 465 LEU A 303 REMARK 465 SER A 304 REMARK 465 PRO A 305 REMARK 465 ASP A 306 REMARK 465 GLN A 307 REMARK 465 LYS A 308 REMARK 465 ALA A 309 REMARK 465 GLY A 310 REMARK 465 ASN A 311 REMARK 465 ASP A 312 REMARK 465 PHE A 313 REMARK 465 LYS A 314 REMARK 465 PHE A 315 REMARK 465 HIS A 316 REMARK 465 ARG A 451 REMARK 465 SER A 452 REMARK 465 PRO A 453 REMARK 465 ASN A 454 REMARK 465 ARG A 455 REMARK 465 ALA A 456 REMARK 465 SER A 457 REMARK 465 SER A 458 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 48 CG OD1 OD2 REMARK 470 GLU A 56 CG CD OE1 OE2 REMARK 470 ILE A 57 CG1 CG2 CD1 REMARK 470 LEU A 60 CG CD1 CD2 REMARK 470 LYS A 75 CD CE NZ REMARK 470 LEU A 76 CG CD1 CD2 REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 LYS A 97 NZ REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 PRO A 217 CG CD REMARK 470 VAL A 245 CG1 CG2 REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 THR A 317 OG1 CG2 REMARK 470 ARG A 318 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 345 CG CD OE1 OE2 REMARK 470 ARG A 349 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 356 CG CD CE NZ REMARK 470 GLU A 364 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 102 O HOH A 497 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 217 N - CA - CB ANGL. DEV. = 7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 49 72.82 -102.26 REMARK 500 ARG A 54 -32.80 -36.68 REMARK 500 ARG A 58 -70.87 -142.98 REMARK 500 HIS A 59 -138.14 -104.19 REMARK 500 ASP A 119 148.03 -177.09 REMARK 500 SER A 141 -165.26 -168.40 REMARK 500 PRO A 150 31.97 -75.75 REMARK 500 ARG A 180 -3.93 75.86 REMARK 500 ASP A 181 43.93 -149.66 REMARK 500 ASP A 199 69.25 63.54 REMARK 500 ASP A 199 69.79 62.51 REMARK 500 SER A 214 86.93 67.72 REMARK 500 GLU A 259 -160.10 64.12 REMARK 500 GLU A 263 -31.24 -39.70 REMARK 500 PHE A 295 78.01 -118.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 459 DBREF 3RP9 A 2 458 UNP B6KP12 B6KP12_TOXGO 92 548 SEQADV 3RP9 GLY A 1 UNP B6KP12 EXPRESSION TAG SEQRES 1 A 458 GLY SER SER HIS GLU ALA ALA ALA ALA GLN GLN HIS ASN SEQRES 2 A 458 SER GLY THR GLN HIS THR VAL SER GLY SER GLN GLN GLU SEQRES 3 A 458 GLY GLN GLN ARG LYS GLN HIS HIS SER SER LYS PRO THR SEQRES 4 A 458 ALA SER MET PRO ARG PRO HIS SER ASP TRP GLN ILE PRO SEQRES 5 A 458 ASP ARG TYR GLU ILE ARG HIS LEU ILE GLY THR GLY SER SEQRES 6 A 458 TYR GLY HIS VAL CYS GLU ALA TYR ASP LYS LEU GLU LYS SEQRES 7 A 458 ARG VAL VAL ALA ILE LYS LYS ILE LEU ARG VAL PHE GLU SEQRES 8 A 458 ASP LEU ILE ASP CYS LYS ARG ILE LEU ARG GLU ILE ALA SEQRES 9 A 458 ILE LEU ASN ARG LEU ASN HIS ASP HIS VAL VAL LYS VAL SEQRES 10 A 458 LEU ASP ILE VAL ILE PRO LYS ASP VAL GLU LYS PHE ASP SEQRES 11 A 458 GLU LEU TYR VAL VAL LEU GLU ILE ALA ASP SER ASP PHE SEQRES 12 A 458 LYS LYS LEU PHE ARG THR PRO VAL TYR LEU THR GLU LEU SEQRES 13 A 458 HIS ILE LYS THR LEU LEU TYR ASN LEU LEU VAL GLY VAL SEQRES 14 A 458 LYS TYR VAL HIS SER ALA GLY ILE LEU HIS ARG ASP LEU SEQRES 15 A 458 LYS PRO ALA ASN CYS LEU VAL ASN GLN ASP CYS SER VAL SEQRES 16 A 458 LYS VAL CYS ASP PHE GLY LEU ALA ARG THR VAL ASP TYR SEQRES 17 A 458 PRO GLU ASN GLY ASN SER GLN LEU PRO ILE SER PRO ARG SEQRES 18 A 458 GLU ASP ASP MET ASN LEU VAL THR PHE PRO HIS THR LYS SEQRES 19 A 458 ASN LEU LYS ARG GLN LEU THR GLY HIS VAL VAL THR ARG SEQRES 20 A 458 TRP TYR ARG ALA PRO GLU LEU ILE LEU LEU GLN GLU ASN SEQRES 21 A 458 TYR THR GLU ALA ILE ASP VAL TRP SER ILE GLY CYS ILE SEQRES 22 A 458 PHE ALA GLU LEU LEU ASN MET ILE LYS GLU ASN VAL ALA SEQRES 23 A 458 TYR HIS ALA ASP ARG GLY PRO LEU PHE PRO GLY SER SER SEQRES 24 A 458 CYS PHE PRO LEU SER PRO ASP GLN LYS ALA GLY ASN ASP SEQRES 25 A 458 PHE LYS PHE HIS THR ARG GLY ASN ARG ASP GLN LEU ASN SEQRES 26 A 458 VAL ILE PHE ASN ILE LEU GLY THR PRO SER GLU GLU ASP SEQRES 27 A 458 ILE GLU ALA LEU GLU LYS GLU ASP ALA LYS ARG TYR ILE SEQRES 28 A 458 ARG ILE PHE PRO LYS ARG GLU GLY THR ASP LEU ALA GLU SEQRES 29 A 458 ARG PHE PRO ALA SER SER ALA ASP ALA ILE HIS LEU LEU SEQRES 30 A 458 LYS ARG MET LEU VAL PHE ASN PRO ASN LYS ARG ILE THR SEQRES 31 A 458 ILE ASN GLU CYS LEU ALA HIS PRO PHE PHE LYS GLU VAL SEQRES 32 A 458 ARG ILE ALA GLU VAL GLU THR ASN ALA THR GLU LYS VAL SEQRES 33 A 458 ARG LEU PRO PHE ASN ASP TRP MET ASN MET ASP GLU PRO SEQRES 34 A 458 GLN LEU ARG TYR ALA PHE VAL LYS GLU ILE GLN ARG TYR SEQRES 35 A 458 HIS PRO GLU ILE GLN LEU PRO ARG ARG SER PRO ASN ARG SEQRES 36 A 458 ALA SER SER HET SO4 A 459 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *41(H2 O) HELIX 1 1 ASP A 92 LEU A 109 1 18 HELIX 2 2 PHE A 143 THR A 149 1 7 HELIX 3 3 THR A 154 ALA A 175 1 22 HELIX 4 4 LYS A 183 ALA A 185 5 3 HELIX 5 5 ALA A 251 LEU A 256 1 6 HELIX 6 6 GLU A 263 ASN A 279 1 17 HELIX 7 7 TYR A 287 ARG A 291 5 5 HELIX 8 8 THR A 317 GLY A 332 1 16 HELIX 9 9 SER A 335 ALA A 341 1 7 HELIX 10 10 LYS A 344 ARG A 352 1 9 HELIX 11 11 ASP A 361 PHE A 366 5 6 HELIX 12 12 SER A 370 LEU A 381 1 12 HELIX 13 13 THR A 390 HIS A 397 1 8 HELIX 14 14 PRO A 398 LYS A 401 5 4 HELIX 15 15 ILE A 405 GLU A 409 5 5 HELIX 16 16 ASP A 427 GLN A 440 1 14 SHEET 1 A 5 TYR A 55 ILE A 57 0 SHEET 2 A 5 VAL A 69 ASP A 74 -1 O TYR A 73 N GLU A 56 SHEET 3 A 5 VAL A 80 ILE A 86 -1 O ILE A 83 N CYS A 70 SHEET 4 A 5 LEU A 132 LEU A 136 -1 O LEU A 136 N ALA A 82 SHEET 5 A 5 VAL A 117 ILE A 120 -1 N LEU A 118 O VAL A 135 SHEET 1 B 3 SER A 141 ASP A 142 0 SHEET 2 B 3 CYS A 187 VAL A 189 -1 O VAL A 189 N SER A 141 SHEET 3 B 3 VAL A 195 VAL A 197 -1 O LYS A 196 N LEU A 188 SITE 1 AC1 4 ARG A 98 ARG A 101 TYR A 208 ASP A 422 CRYST1 46.508 97.454 48.374 90.00 104.92 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021502 0.000000 0.005728 0.00000 SCALE2 0.000000 0.010261 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021393 0.00000