HEADER ENDOCYTOSIS/EXOCYTOSIS 19-APR-99 3RPB TITLE THE C2B-DOMAIN OF RABPHILIN: STRUCTURAL VARIATIONS IN A JANUS-FACED TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RABPHILIN 3-A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C2B DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: DE3 KEYWDS C2-DOMAINS, C2B-DOMAIN, RABPHILIN, ENDOCYTOSIS-EXOCYTOSIS COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.UBACH,J.GARCIA,M.P.NITTLER,T.C.SUDHOF,J.RIZO REVDAT 3 16-MAR-22 3RPB 1 REMARK REVDAT 2 24-FEB-09 3RPB 1 VERSN REVDAT 1 23-DEC-99 3RPB 0 JRNL AUTH J.UBACH,J.GARCIA,M.P.NITTLER,T.C.SUDHOF,J.RIZO JRNL TITL STRUCTURE OF THE JANUS-FACED C2B DOMAIN OF RABPHILIN. JRNL REF NAT.CELL BIOL. V. 1 106 1999 JRNL REFN ISSN 1465-7392 JRNL PMID 10559882 JRNL DOI 10.1038/10076 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TORSION ANGLE SIMULATED ANNEALING REMARK 4 REMARK 4 3RPB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-99. REMARK 100 THE DEPOSITION ID IS D_1000000884. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 304.5 REMARK 210 PH : 6.1 REMARK 210 IONIC STRENGTH : 150 MM REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 95% WATER/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS REMARK 210 METHOD USED : TORSION ANGLE SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST OVERALL ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 559 H PHE A 611 1.46 REMARK 500 H LEU A 545 O ARG A 563 1.52 REMARK 500 H SER A 547 O GLY A 560 1.54 REMARK 500 H LEU A 625 O LEU A 646 1.54 REMARK 500 O LEU A 557 H TYR A 613 1.55 REMARK 500 H LEU A 548 O ILE A 669 1.56 REMARK 500 O VAL A 580 H THR A 596 1.57 REMARK 500 O ASP A 577 H TYR A 632 1.57 REMARK 500 H VAL A 629 O GLY A 642 1.57 REMARK 500 O LEU A 625 H LEU A 646 1.57 REMARK 500 HE2 HIS A 617 O LEU A 662 1.57 REMARK 500 H HIS A 566 OD1 ASN A 604 1.58 REMARK 500 O LEU A 620 H LYS A 623 1.58 REMARK 500 H ASP A 631 O ASP A 639 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 549 127.16 171.74 REMARK 500 1 ILE A 562 -75.78 -70.87 REMARK 500 1 TYR A 575 -169.93 -125.95 REMARK 500 1 ASP A 587 167.90 88.13 REMARK 500 1 LYS A 595 119.44 -160.75 REMARK 500 1 THR A 602 143.06 -179.44 REMARK 500 1 ASP A 614 70.49 -108.75 REMARK 500 1 GLU A 653 -52.62 -150.38 REMARK 500 1 TRP A 658 -81.00 -60.05 REMARK 500 1 ASN A 664 60.52 -100.17 REMARK 500 1 LYS A 665 -81.88 -53.40 REMARK 500 1 GLU A 678 -74.72 -100.37 REMARK 500 2 MET A 549 128.28 174.36 REMARK 500 2 ILE A 562 -73.28 -73.28 REMARK 500 2 TYR A 575 -169.15 -124.64 REMARK 500 2 ASP A 577 58.32 -117.52 REMARK 500 2 ASP A 587 105.52 -5.02 REMARK 500 2 LYS A 590 -34.67 87.20 REMARK 500 2 LYS A 595 119.01 -160.56 REMARK 500 2 LYS A 601 76.63 31.66 REMARK 500 2 THR A 602 144.56 -179.00 REMARK 500 2 ASP A 614 69.85 -104.75 REMARK 500 2 ASP A 633 119.02 -160.11 REMARK 500 2 GLU A 653 -40.07 -163.65 REMARK 500 2 TRP A 658 -80.20 -59.63 REMARK 500 2 ASN A 664 66.22 -107.78 REMARK 500 2 LYS A 665 -73.23 -67.69 REMARK 500 2 ASP A 666 -31.39 -33.32 REMARK 500 3 MET A 549 125.77 175.67 REMARK 500 3 SER A 551 77.22 -104.09 REMARK 500 3 ILE A 562 -75.04 -72.84 REMARK 500 3 TYR A 575 -168.70 -119.95 REMARK 500 3 ASP A 587 111.28 5.94 REMARK 500 3 LYS A 590 -25.11 87.67 REMARK 500 3 LYS A 601 75.72 34.73 REMARK 500 3 THR A 602 143.45 179.01 REMARK 500 3 ASP A 614 65.26 -107.74 REMARK 500 3 ASN A 638 -162.93 -77.87 REMARK 500 3 TRP A 658 -77.01 -61.15 REMARK 500 3 ASN A 664 68.82 -100.11 REMARK 500 3 LYS A 665 -79.90 -58.57 REMARK 500 3 GLU A 678 -79.44 -90.19 REMARK 500 4 MET A 549 136.28 -179.53 REMARK 500 4 ILE A 562 -75.06 -75.81 REMARK 500 4 TYR A 575 -169.36 -123.26 REMARK 500 4 ASP A 577 64.25 -115.90 REMARK 500 4 ASP A 587 107.49 -24.34 REMARK 500 4 LYS A 595 119.78 -160.16 REMARK 500 4 LYS A 601 63.82 68.81 REMARK 500 4 THR A 602 149.62 178.71 REMARK 500 REMARK 500 THIS ENTRY HAS 281 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 3RPB A 541 680 UNP P47709 RP3A_RAT 541 680 SEQRES 1 A 140 ARG GLY LYS ILE LEU VAL SER LEU MET TYR SER THR GLN SEQRES 2 A 140 GLN GLY GLY LEU ILE VAL GLY ILE ILE ARG CYS VAL HIS SEQRES 3 A 140 LEU ALA ALA MET ASP ALA ASN GLY TYR SER ASP PRO PHE SEQRES 4 A 140 VAL LYS LEU TRP LEU LYS PRO ASP MET GLY LYS LYS ALA SEQRES 5 A 140 LYS HIS LYS THR GLN ILE LYS LYS LYS THR LEU ASN PRO SEQRES 6 A 140 GLU PHE ASN GLU GLU PHE PHE TYR ASP ILE LYS HIS SER SEQRES 7 A 140 ASP LEU ALA LYS LYS SER LEU ASP ILE SER VAL TRP ASP SEQRES 8 A 140 TYR ASP ILE GLY LYS SER ASN ASP TYR ILE GLY GLY CYS SEQRES 9 A 140 GLN LEU GLY ILE SER ALA LYS GLY GLU ARG LEU LYS HIS SEQRES 10 A 140 TRP TYR GLU CYS LEU LYS ASN LYS ASP LYS LYS ILE GLU SEQRES 11 A 140 ARG TRP HIS GLN LEU GLN ASN GLU ASN HIS HELIX 1 1 HIS A 617 LEU A 620 1 4 HELIX 2 2 ARG A 654 LYS A 663 1 10 SHEET 1 A 3 ILE A 669 GLN A 674 0 SHEET 2 A 3 LYS A 543 SER A 551 -1 N LEU A 548 O ILE A 669 SHEET 3 A 3 GLY A 556 VAL A 565 -1 N VAL A 565 O LYS A 543 SHEET 1 B 3 PRO A 578 LYS A 585 0 SHEET 2 B 3 SER A 624 ASP A 631 -1 N TRP A 630 O PHE A 579 SHEET 3 B 3 ASP A 639 GLY A 647 -1 N LEU A 646 O LEU A 625 CISPEP 1 LYS A 585 PRO A 586 1 -0.20 CISPEP 2 LYS A 585 PRO A 586 2 -0.09 CISPEP 3 LYS A 585 PRO A 586 3 0.16 CISPEP 4 LYS A 585 PRO A 586 4 0.09 CISPEP 5 LYS A 585 PRO A 586 5 -0.18 CISPEP 6 LYS A 585 PRO A 586 6 0.06 CISPEP 7 LYS A 585 PRO A 586 7 -0.03 CISPEP 8 LYS A 585 PRO A 586 8 0.10 CISPEP 9 LYS A 585 PRO A 586 9 -0.09 CISPEP 10 LYS A 585 PRO A 586 10 -0.02 CISPEP 11 LYS A 585 PRO A 586 11 -0.12 CISPEP 12 LYS A 585 PRO A 586 12 -0.03 CISPEP 13 LYS A 585 PRO A 586 13 -0.13 CISPEP 14 LYS A 585 PRO A 586 14 -0.28 CISPEP 15 LYS A 585 PRO A 586 15 0.24 CISPEP 16 LYS A 585 PRO A 586 16 -0.11 CISPEP 17 LYS A 585 PRO A 586 17 0.11 CISPEP 18 LYS A 585 PRO A 586 18 -0.04 CISPEP 19 LYS A 585 PRO A 586 19 -0.23 CISPEP 20 LYS A 585 PRO A 586 20 -0.07 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1