HEADER TRANSFERASE 26-APR-11 3RPD TITLE THE STRUCTURE OF A B12-INDEPENDENT METHIONINE SYNTHASE FROM SHEWANELLA TITLE 2 SP. W3-18-1 IN COMPLEX WITH SELENOMETHIONINE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE SYNTHASE (B12-INDEPENDENT); COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.14; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA SP.; SOURCE 3 ORGANISM_TAXID: 351745; SOURCE 4 STRAIN: W3-18-1; SOURCE 5 GENE: SPUTW3181_1250; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, ROSSMANN FOLD, METHIONINE SYNTHASE, ZN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,H.LI,C.HATZOS-SKINTGES,C.TESAR,J.BEARDEN,A.CLANCY, AUTHOR 2 A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 2 08-NOV-17 3RPD 1 REMARK REVDAT 1 31-AUG-11 3RPD 0 JRNL AUTH M.E.CUFF,H.LI,C.HATZOS-SKINTGES,C.TESAR,J.BEARDEN,A.CLANCY, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL THE STRUCTURE OF A B12-INDEPENDENT METHIONINE SYNTHASE FROM JRNL TITL 2 SHEWANELLA SP. W3-18-1 IN COMPLEX WITH SELENOMETHIONINE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 105371 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5565 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7787 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE SET COUNT : 410 REMARK 3 BIN FREE R VALUE : 0.2190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5438 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 944 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.33000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.54000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.072 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.188 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5668 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3867 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7692 ; 1.425 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9496 ; 0.905 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 706 ; 5.326 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 249 ;35.690 ;24.859 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1028 ;11.735 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;15.315 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 870 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6241 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1076 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3487 ; 0.762 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1399 ; 0.229 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5657 ; 1.361 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2181 ; 2.347 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2032 ; 3.757 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1676 33.6449 35.5847 REMARK 3 T TENSOR REMARK 3 T11: 0.0237 T22: 0.0305 REMARK 3 T33: 0.0032 T12: 0.0098 REMARK 3 T13: -0.0055 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.3707 L22: 0.3643 REMARK 3 L33: 0.2785 L12: 0.1799 REMARK 3 L13: -0.0143 L23: 0.0281 REMARK 3 S TENSOR REMARK 3 S11: -0.0042 S12: 0.0380 S13: -0.0118 REMARK 3 S21: 0.0129 S22: -0.0047 S23: -0.0199 REMARK 3 S31: -0.0039 S32: 0.0137 S33: 0.0089 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): -18.0337 35.9092 78.1541 REMARK 3 T TENSOR REMARK 3 T11: 0.0180 T22: 0.0156 REMARK 3 T33: 0.0097 T12: -0.0052 REMARK 3 T13: -0.0069 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.4573 L22: 0.2918 REMARK 3 L33: 0.3120 L12: -0.1286 REMARK 3 L13: -0.0012 L23: -0.0596 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: 0.0160 S13: 0.0151 REMARK 3 S21: -0.0253 S22: -0.0054 S23: 0.0034 REMARK 3 S31: -0.0008 S32: -0.0085 S33: -0.0006 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3RPD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065212. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97942 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 111443 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.42500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE, DM 6.1, HKL-3000, SHELXD, SOLVE, RESOLVE, REMARK 200 CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M IMIDAZOLE:HCL PH 8.0, 1.0M SODIUM REMARK 280 CITRATE TRIBASIC, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.68550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 LYS A 2 REMARK 465 THR A 3 REMARK 465 ARG A 4 REMARK 465 LEU A 5 REMARK 465 ASN A 6 REMARK 465 LYS A 7 REMARK 465 THR A 8 REMARK 465 SER A 9 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 LYS B 2 REMARK 465 THR B 3 REMARK 465 ARG B 4 REMARK 465 LEU B 5 REMARK 465 ASN B 6 REMARK 465 LYS B 7 REMARK 465 THR B 8 REMARK 465 SER B 9 REMARK 465 LEU B 10 REMARK 465 ASN B 11 REMARK 465 GLN B 12 REMARK 465 ARG B 354 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 94 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 102 16.88 58.81 REMARK 500 ARG A 103 -44.10 -141.86 REMARK 500 GLN A 118 -87.39 -108.31 REMARK 500 HIS A 155 -56.23 -137.34 REMARK 500 VAL A 194 -59.22 -127.50 REMARK 500 TRP A 202 -18.56 -149.00 REMARK 500 CYS A 264 -51.80 -138.75 REMARK 500 CYS A 264 -52.72 -135.73 REMARK 500 ARG B 103 -45.63 -138.61 REMARK 500 GLN B 118 -86.54 -108.67 REMARK 500 VAL B 194 -47.62 -135.75 REMARK 500 TRP B 202 -12.46 -150.31 REMARK 500 CYS B 264 -50.30 -137.93 REMARK 500 CYS B 264 -53.36 -134.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 355 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 221 NE2 REMARK 620 2 CYS A 322 SG 126.0 REMARK 620 3 CYS A 223 SG 105.4 115.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 355 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 221 NE2 REMARK 620 2 CYS B 322 SG 125.6 REMARK 620 3 CYS B 223 SG 105.2 115.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 355 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 355 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 357 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 357 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 358 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC100174 RELATED DB: TARGETDB DBREF 3RPD A 1 354 UNP A1RHE8 A1RHE8_SHESW 1 354 DBREF 3RPD B 1 354 UNP A1RHE8 A1RHE8_SHESW 1 354 SEQADV 3RPD SER A -2 UNP A1RHE8 EXPRESSION TAG SEQADV 3RPD ASN A -1 UNP A1RHE8 EXPRESSION TAG SEQADV 3RPD ALA A 0 UNP A1RHE8 EXPRESSION TAG SEQADV 3RPD SER B -2 UNP A1RHE8 EXPRESSION TAG SEQADV 3RPD ASN B -1 UNP A1RHE8 EXPRESSION TAG SEQADV 3RPD ALA B 0 UNP A1RHE8 EXPRESSION TAG SEQRES 1 A 357 SER ASN ALA MSE LYS THR ARG LEU ASN LYS THR SER LEU SEQRES 2 A 357 ASN GLN ALA LEU LEU PRO THR SER THR ALA GLY SER LEU SEQRES 3 A 357 PRO LYS PRO LEU TRP LEU ALA GLU PRO GLU THR LEU TRP SEQRES 4 A 357 SER PRO TRP LYS LEU GLN GLY GLU GLU LEU ILE THR GLY SEQRES 5 A 357 LYS HIS ASP ALA LEU ARG LEU SER LEU GLN ASP GLN GLN SEQRES 6 A 357 LEU ALA GLY ILE ASP ILE VAL SER ASP GLY GLU GLN THR SEQRES 7 A 357 ARG GLN HIS PHE VAL THR THR PHE ILE GLU HIS LEU ASN SEQRES 8 A 357 GLY VAL ASP PHE SER LYS ARG LYS ILE VAL LYS ILE ARG SEQRES 9 A 357 ASP ARG TYR ASP ALA SER VAL PRO THR VAL VAL GLY PRO SEQRES 10 A 357 VAL SER ARG GLN LYS SER VAL PHE VAL GLU ASP ALA LYS SEQRES 11 A 357 PHE LEU ARG LYS GLN THR THR GLN PRO ILE LYS TRP ALA SEQRES 12 A 357 LEU PRO GLY PRO MSE THR MSE ILE ASP THR LEU TYR ASP SEQRES 13 A 357 ASP HIS TYR LYS SER ARG GLU LYS LEU ALA TRP GLU PHE SEQRES 14 A 357 ALA LYS ILE LEU ASN GLU GLU ALA LYS GLU LEU GLU ALA SEQRES 15 A 357 ALA GLY VAL ASP ILE ILE GLN PHE ASP GLU PRO ALA PHE SEQRES 16 A 357 ASN VAL PHE PHE ASP GLU VAL ASN ASP TRP GLY ILE ALA SEQRES 17 A 357 CYS LEU GLU ARG ALA ILE GLU GLY LEU LYS CYS GLU THR SEQRES 18 A 357 ALA VAL HIS ILE CYS TYR GLY TYR GLY ILE LYS ALA ASN SEQRES 19 A 357 THR ASP TRP LYS LYS THR LEU GLY SER GLU TRP ARG GLN SEQRES 20 A 357 TYR GLU GLU VAL PHE PRO LYS LEU GLN LYS SER ASN ILE SEQRES 21 A 357 ASP ILE ILE SER LEU GLU CYS HIS ASN SER HIS VAL PRO SEQRES 22 A 357 MSE GLU LEU LEU GLU LEU ILE ARG GLY LYS LYS VAL MSE SEQRES 23 A 357 VAL GLY ALA ILE ASP VAL ALA THR ASP THR ILE GLU THR SEQRES 24 A 357 ALA GLU GLU VAL ALA ASP THR LEU ARG LYS ALA LEU LYS SEQRES 25 A 357 PHE VAL ASP ALA ASP LYS LEU TYR PRO CYS THR ASN CYS SEQRES 26 A 357 GLY MSE THR PRO LEU SER HIS GLN VAL THR ARG GLY LYS SEQRES 27 A 357 LEU ASN ALA LEU SER ALA GLY ALA GLU ILE VAL ARG LYS SEQRES 28 A 357 GLU LEU LEU ALA LEU ARG SEQRES 1 B 357 SER ASN ALA MSE LYS THR ARG LEU ASN LYS THR SER LEU SEQRES 2 B 357 ASN GLN ALA LEU LEU PRO THR SER THR ALA GLY SER LEU SEQRES 3 B 357 PRO LYS PRO LEU TRP LEU ALA GLU PRO GLU THR LEU TRP SEQRES 4 B 357 SER PRO TRP LYS LEU GLN GLY GLU GLU LEU ILE THR GLY SEQRES 5 B 357 LYS HIS ASP ALA LEU ARG LEU SER LEU GLN ASP GLN GLN SEQRES 6 B 357 LEU ALA GLY ILE ASP ILE VAL SER ASP GLY GLU GLN THR SEQRES 7 B 357 ARG GLN HIS PHE VAL THR THR PHE ILE GLU HIS LEU ASN SEQRES 8 B 357 GLY VAL ASP PHE SER LYS ARG LYS ILE VAL LYS ILE ARG SEQRES 9 B 357 ASP ARG TYR ASP ALA SER VAL PRO THR VAL VAL GLY PRO SEQRES 10 B 357 VAL SER ARG GLN LYS SER VAL PHE VAL GLU ASP ALA LYS SEQRES 11 B 357 PHE LEU ARG LYS GLN THR THR GLN PRO ILE LYS TRP ALA SEQRES 12 B 357 LEU PRO GLY PRO MSE THR MSE ILE ASP THR LEU TYR ASP SEQRES 13 B 357 ASP HIS TYR LYS SER ARG GLU LYS LEU ALA TRP GLU PHE SEQRES 14 B 357 ALA LYS ILE LEU ASN GLU GLU ALA LYS GLU LEU GLU ALA SEQRES 15 B 357 ALA GLY VAL ASP ILE ILE GLN PHE ASP GLU PRO ALA PHE SEQRES 16 B 357 ASN VAL PHE PHE ASP GLU VAL ASN ASP TRP GLY ILE ALA SEQRES 17 B 357 CYS LEU GLU ARG ALA ILE GLU GLY LEU LYS CYS GLU THR SEQRES 18 B 357 ALA VAL HIS ILE CYS TYR GLY TYR GLY ILE LYS ALA ASN SEQRES 19 B 357 THR ASP TRP LYS LYS THR LEU GLY SER GLU TRP ARG GLN SEQRES 20 B 357 TYR GLU GLU VAL PHE PRO LYS LEU GLN LYS SER ASN ILE SEQRES 21 B 357 ASP ILE ILE SER LEU GLU CYS HIS ASN SER HIS VAL PRO SEQRES 22 B 357 MSE GLU LEU LEU GLU LEU ILE ARG GLY LYS LYS VAL MSE SEQRES 23 B 357 VAL GLY ALA ILE ASP VAL ALA THR ASP THR ILE GLU THR SEQRES 24 B 357 ALA GLU GLU VAL ALA ASP THR LEU ARG LYS ALA LEU LYS SEQRES 25 B 357 PHE VAL ASP ALA ASP LYS LEU TYR PRO CYS THR ASN CYS SEQRES 26 B 357 GLY MSE THR PRO LEU SER HIS GLN VAL THR ARG GLY LYS SEQRES 27 B 357 LEU ASN ALA LEU SER ALA GLY ALA GLU ILE VAL ARG LYS SEQRES 28 B 357 GLU LEU LEU ALA LEU ARG MODRES 3RPD MSE A 145 MET SELENOMETHIONINE MODRES 3RPD MSE A 147 MET SELENOMETHIONINE MODRES 3RPD MSE A 271 MET SELENOMETHIONINE MODRES 3RPD MSE A 283 MET SELENOMETHIONINE MODRES 3RPD MSE A 324 MET SELENOMETHIONINE MODRES 3RPD MSE B 145 MET SELENOMETHIONINE MODRES 3RPD MSE B 147 MET SELENOMETHIONINE MODRES 3RPD MSE B 271 MET SELENOMETHIONINE MODRES 3RPD MSE B 283 MET SELENOMETHIONINE MODRES 3RPD MSE B 324 MET SELENOMETHIONINE HET MSE A 145 8 HET MSE A 147 8 HET MSE A 271 8 HET MSE A 283 8 HET MSE A 324 8 HET MSE B 145 16 HET MSE B 147 8 HET MSE B 271 8 HET MSE B 283 8 HET MSE B 324 8 HET ZN A 355 1 HET MSE A 356 9 HET GOL A 357 6 HET ZN B 355 1 HET MSE B 356 9 HET GOL B 357 6 HET GOL B 358 6 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 ZN 2(ZN 2+) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 10 HOH *944(H2 O) HELIX 1 1 GLN A 42 ALA A 64 1 23 HELIX 2 2 VAL A 80 HIS A 86 1 7 HELIX 3 3 PHE A 122 THR A 133 1 12 HELIX 4 4 GLY A 143 ASP A 149 1 7 HELIX 5 5 SER A 158 ALA A 180 1 23 HELIX 6 6 PRO A 190 VAL A 194 5 5 HELIX 7 7 PHE A 195 TRP A 202 1 8 HELIX 8 8 TRP A 202 GLU A 212 1 11 HELIX 9 9 ILE A 228 LYS A 236 1 9 HELIX 10 10 ARG A 243 GLU A 247 5 5 HELIX 11 11 VAL A 248 SER A 255 1 8 HELIX 12 12 PRO A 270 ARG A 278 5 9 HELIX 13 13 THR A 296 LYS A 309 1 14 HELIX 14 14 ASP A 312 ASP A 314 5 3 HELIX 15 15 SER A 328 LEU A 351 1 24 HELIX 16 16 GLN B 42 ALA B 64 1 23 HELIX 17 17 VAL B 80 HIS B 86 1 7 HELIX 18 18 PHE B 122 THR B 133 1 12 HELIX 19 19 GLY B 143 ASP B 149 1 7 HELIX 20 20 SER B 158 ALA B 180 1 23 HELIX 21 21 PRO B 190 VAL B 194 5 5 HELIX 22 22 PHE B 195 TRP B 202 1 8 HELIX 23 23 TRP B 202 GLU B 212 1 11 HELIX 24 24 ILE B 228 LYS B 236 1 9 HELIX 25 25 ARG B 243 GLU B 247 5 5 HELIX 26 26 VAL B 248 SER B 255 1 8 HELIX 27 27 PRO B 270 ARG B 278 5 9 HELIX 28 28 THR B 296 LYS B 309 1 14 HELIX 29 29 ASP B 312 ASP B 314 5 3 HELIX 30 30 SER B 328 ALA B 352 1 25 SHEET 1 A 3 ASN A 88 ILE A 100 0 SHEET 2 A 3 TYR A 104 SER A 116 -1 O TYR A 104 N ILE A 100 SHEET 3 A 3 TYR A 152 ASP A 153 1 O TYR A 152 N VAL A 111 SHEET 1 B 6 LYS A 138 PRO A 142 0 SHEET 2 B 6 ILE A 184 ASP A 188 1 O GLN A 186 N LEU A 141 SHEET 3 B 6 GLU A 217 ILE A 222 1 O HIS A 221 N PHE A 187 SHEET 4 B 6 ILE A 259 LEU A 262 1 O SER A 261 N VAL A 220 SHEET 5 B 6 LYS A 281 GLY A 285 1 O MSE A 283 N LEU A 262 SHEET 6 B 6 LEU A 316 CYS A 319 1 O TYR A 317 N VAL A 282 SHEET 1 C 3 ASN B 88 ILE B 100 0 SHEET 2 C 3 TYR B 104 SER B 116 -1 O TYR B 104 N ILE B 100 SHEET 3 C 3 TYR B 152 ASP B 153 1 O TYR B 152 N VAL B 111 SHEET 1 D 6 LYS B 138 PRO B 142 0 SHEET 2 D 6 ILE B 184 ASP B 188 1 O ASP B 188 N LEU B 141 SHEET 3 D 6 GLU B 217 ILE B 222 1 O ALA B 219 N PHE B 187 SHEET 4 D 6 ILE B 259 LEU B 262 1 O SER B 261 N VAL B 220 SHEET 5 D 6 LYS B 281 GLY B 285 1 O MSE B 283 N LEU B 262 SHEET 6 D 6 LEU B 316 CYS B 319 1 O TYR B 317 N VAL B 282 LINK C PRO A 144 N MSE A 145 1555 1555 1.33 LINK C MSE A 145 N THR A 146 1555 1555 1.32 LINK C THR A 146 N MSE A 147 1555 1555 1.33 LINK C MSE A 147 N ILE A 148 1555 1555 1.34 LINK C PRO A 270 N MSE A 271 1555 1555 1.32 LINK C MSE A 271 N GLU A 272 1555 1555 1.33 LINK C VAL A 282 N MSE A 283 1555 1555 1.33 LINK C MSE A 283 N VAL A 284 1555 1555 1.32 LINK C GLY A 323 N MSE A 324 1555 1555 1.33 LINK C MSE A 324 N THR A 325 1555 1555 1.33 LINK C PRO B 144 N AMSE B 145 1555 1555 1.32 LINK C PRO B 144 N BMSE B 145 1555 1555 1.34 LINK C AMSE B 145 N THR B 146 1555 1555 1.33 LINK C BMSE B 145 N THR B 146 1555 1555 1.33 LINK C THR B 146 N MSE B 147 1555 1555 1.32 LINK C MSE B 147 N ILE B 148 1555 1555 1.33 LINK C PRO B 270 N MSE B 271 1555 1555 1.33 LINK C MSE B 271 N GLU B 272 1555 1555 1.33 LINK C VAL B 282 N MSE B 283 1555 1555 1.33 LINK C MSE B 283 N VAL B 284 1555 1555 1.33 LINK C GLY B 323 N MSE B 324 1555 1555 1.32 LINK C MSE B 324 N THR B 325 1555 1555 1.33 LINK NE2 HIS A 221 ZN ZN A 355 1555 1555 2.10 LINK NE2 HIS B 221 ZN ZN B 355 1555 1555 2.11 LINK SG CYS A 322 ZN ZN A 355 1555 1555 2.22 LINK SG CYS B 322 ZN ZN B 355 1555 1555 2.26 LINK SG CYS A 223 ZN ZN A 355 1555 1555 2.26 LINK SG CYS B 223 ZN ZN B 355 1555 1555 2.27 SITE 1 AC1 4 HIS A 221 CYS A 223 CYS A 322 MSE A 356 SITE 1 AC2 4 HIS B 221 CYS B 223 CYS B 322 MSE B 356 SITE 1 AC3 8 SER A 120 VAL A 123 LYS A 127 GLU A 176 SITE 2 AC3 8 LYS A 236 HIS A 268 HOH A 388 HOH A 578 SITE 1 AC4 9 SER B 120 VAL B 123 LYS B 127 GLU B 176 SITE 2 AC4 9 LYS B 236 TRP B 242 HIS B 268 HOH B 478 SITE 3 AC4 9 HOH B 855 SITE 1 AC5 10 LYS B 50 THR B 75 THR B 82 HIS B 86 SITE 2 AC5 10 VAL B 121 PHE B 122 ASP B 125 HOH B 476 SITE 3 AC5 10 HOH B 524 HOH B 597 CRYST1 46.099 89.371 86.526 90.00 92.45 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021692 0.000000 0.000927 0.00000 SCALE2 0.000000 0.011189 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011568 0.00000