data_3RQ3 # _entry.id 3RQ3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3RQ3 pdb_00003rq3 10.2210/pdb3rq3/pdb RCSB RCSB065238 ? ? WWPDB D_1000065238 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3Q0H . unspecified TargetDB NYSGRC-006165 . unspecified # _pdbx_database_status.entry_id 3RQ3 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-04-27 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ramagopal, U.A.' 1 'Rubinstein, R.' 2 'Guo, H.' 3 'Samanta, D.' 4 'Nathenson, S.G.' 5 'Almo, S.C.' 6 'New York Structural Genomics Research Consortium (NYSGRC)' 7 'Atoms-to-Animals: The Immune Function Network (IFN)' 8 # _citation.id primary _citation.title 'Structure of T-cell immunoreceptor with immunoglobulin and ITIM domains (TIGIT) in hexagonal crystal form' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ramagopal, U.A.' 1 ? primary 'Rubinstein, R.' 2 ? primary 'Guo, H.' 3 ? primary 'Samanta, D.' 4 ? primary 'Nathenson, S.G.' 5 ? primary 'Almo, S.C.' 6 ? primary 'New York Structural Genomics Research Consortium (NYSGRC)' 7 ? primary 'Atoms-to-Animals: The Immune Function Network (IFN)' 8 ? # _cell.entry_id 3RQ3 _cell.length_a 118.614 _cell.length_b 118.614 _cell.length_c 98.197 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3RQ3 _symmetry.space_group_name_H-M 'P 64 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'T cell immunoreceptor with Ig and ITIM domains' 12585.009 2 ? ? 'UNP residues 22-137' ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 water nat water 18.015 38 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'V-set and immunoglobulin domain-containing protein 9, V-set and transmembrane domain-containing protein 3' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MMTGTIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVN DTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGAR ; _entity_poly.pdbx_seq_one_letter_code_can ;MMTGTIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVN DTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGAR ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier NYSGRC-006165 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 MET n 1 3 THR n 1 4 GLY n 1 5 THR n 1 6 ILE n 1 7 GLU n 1 8 THR n 1 9 THR n 1 10 GLY n 1 11 ASN n 1 12 ILE n 1 13 SER n 1 14 ALA n 1 15 GLU n 1 16 LYS n 1 17 GLY n 1 18 GLY n 1 19 SER n 1 20 ILE n 1 21 ILE n 1 22 LEU n 1 23 GLN n 1 24 CYS n 1 25 HIS n 1 26 LEU n 1 27 SER n 1 28 SER n 1 29 THR n 1 30 THR n 1 31 ALA n 1 32 GLN n 1 33 VAL n 1 34 THR n 1 35 GLN n 1 36 VAL n 1 37 ASN n 1 38 TRP n 1 39 GLU n 1 40 GLN n 1 41 GLN n 1 42 ASP n 1 43 GLN n 1 44 LEU n 1 45 LEU n 1 46 ALA n 1 47 ILE n 1 48 CYS n 1 49 ASN n 1 50 ALA n 1 51 ASP n 1 52 LEU n 1 53 GLY n 1 54 TRP n 1 55 HIS n 1 56 ILE n 1 57 SER n 1 58 PRO n 1 59 SER n 1 60 PHE n 1 61 LYS n 1 62 ASP n 1 63 ARG n 1 64 VAL n 1 65 ALA n 1 66 PRO n 1 67 GLY n 1 68 PRO n 1 69 GLY n 1 70 LEU n 1 71 GLY n 1 72 LEU n 1 73 THR n 1 74 LEU n 1 75 GLN n 1 76 SER n 1 77 LEU n 1 78 THR n 1 79 VAL n 1 80 ASN n 1 81 ASP n 1 82 THR n 1 83 GLY n 1 84 GLU n 1 85 TYR n 1 86 PHE n 1 87 CYS n 1 88 ILE n 1 89 TYR n 1 90 HIS n 1 91 THR n 1 92 TYR n 1 93 PRO n 1 94 ASP n 1 95 GLY n 1 96 THR n 1 97 TYR n 1 98 THR n 1 99 GLY n 1 100 ARG n 1 101 ILE n 1 102 PHE n 1 103 LEU n 1 104 GLU n 1 105 VAL n 1 106 LEU n 1 107 GLU n 1 108 SER n 1 109 SER n 1 110 VAL n 1 111 ALA n 1 112 GLU n 1 113 HIS n 1 114 GLY n 1 115 ALA n 1 116 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'TIGIT, VSIG9, VSTM3' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET3a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TIGIT_HUMAN _struct_ref.pdbx_db_accession Q495A1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MMTGTIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVN DTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGAR ; _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3RQ3 A 1 ? 116 ? Q495A1 22 ? 137 ? 22 137 2 1 3RQ3 B 1 ? 116 ? Q495A1 22 ? 137 ? 22 137 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3RQ3 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.96 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 68.95 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '1.0M Ammonium Sulfate, 0.1M BIS-TRIS pH 5.5, 1% PEG3350, Vapor diffusion, Sitting drop, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-09-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_wavelength_list 0.9793 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A # _reflns.entry_id 3RQ3 _reflns.d_resolution_high 2.700 _reflns.d_resolution_low 37.800 _reflns.number_obs 11650 _reflns.pdbx_Rmerge_I_obs 0.085 _reflns.pdbx_netI_over_sigmaI 10.000 _reflns.pdbx_chi_squared 1.035 _reflns.pdbx_redundancy 13.700 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all 11650 _reflns.pdbx_Rsym_value 0.061 _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.700 2.750 ? ? ? ? ? ? 0.841 13.900 ? 555 100.000 1 ? 2.750 2.800 ? ? ? 0.891 ? ? 0.868 14.000 ? 565 100.000 2 ? 2.800 2.850 ? ? ? 0.710 ? ? 0.869 13.800 ? 571 100.000 3 ? 2.850 2.910 ? ? ? 0.596 ? ? 0.828 14.000 ? 562 100.000 4 ? 2.910 2.970 ? ? ? 0.502 ? ? 0.868 13.900 ? 576 100.000 5 ? 2.970 3.040 ? ? ? 0.416 ? ? 0.913 13.900 ? 564 100.000 6 ? 3.040 3.120 ? ? ? 0.331 ? ? 0.900 13.900 ? 567 100.000 7 ? 3.120 3.200 ? ? ? 0.257 ? ? 0.913 14.100 ? 580 100.000 8 ? 3.200 3.300 ? ? ? 0.203 ? ? 0.928 14.000 ? 565 100.000 9 ? 3.300 3.400 ? ? ? 0.172 ? ? 0.947 14.100 ? 568 100.000 10 ? 3.400 3.520 ? ? ? 0.132 ? ? 0.982 14.100 ? 576 100.000 11 ? 3.520 3.660 ? ? ? 0.108 ? ? 1.096 13.900 ? 583 100.000 12 ? 3.660 3.830 ? ? ? 0.098 ? ? 1.198 13.900 ? 577 100.000 13 ? 3.830 4.030 ? ? ? 0.088 ? ? 1.310 13.900 ? 572 100.000 14 ? 4.030 4.290 ? ? ? 0.079 ? ? 1.462 13.700 ? 596 100.000 15 ? 4.290 4.620 ? ? ? 0.074 ? ? 1.606 13.600 ? 582 100.000 16 ? 4.620 5.080 ? ? ? 0.060 ? ? 1.419 13.300 ? 593 100.000 17 ? 5.080 5.810 ? ? ? 0.055 ? ? 1.056 12.700 ? 604 100.000 18 ? 5.810 7.320 ? ? ? 0.048 ? ? 0.908 13.500 ? 624 100.000 19 ? 7.320 50.000 ? ? ? 0.037 ? ? 0.788 12.100 ? 670 99.300 20 ? # _refine.entry_id 3RQ3 _refine.ls_d_res_high 2.7000 _refine.ls_d_res_low 37.82 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 96.7500 _refine.ls_number_reflns_obs 11255 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES: WITH TLS ADDED. UNKNOWN DENSITY AROUND CYS69 FOUND IN BOTH MOLECULES - NOT MODELED. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2082 _refine.ls_R_factor_R_work 0.2059 _refine.ls_wR_factor_R_work 0.1949 _refine.ls_R_factor_R_free 0.2531 _refine.ls_wR_factor_R_free 0.2438 _refine.ls_percent_reflns_R_free 4.8000 _refine.ls_number_reflns_R_free 536 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 40.8379 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.2500 _refine.aniso_B[2][2] -0.2500 _refine.aniso_B[3][3] 0.3700 _refine.aniso_B[1][2] -0.1200 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9250 _refine.correlation_coeff_Fo_to_Fc_free 0.8790 _refine.overall_SU_R_Cruickshank_DPI 0.3732 _refine.overall_SU_R_free 0.2790 _refine.pdbx_overall_ESU_R_Free 0.2790 _refine.overall_SU_ML 0.1940 _refine.overall_SU_B 20.5960 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 3Q0H _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8200 _refine.B_iso_max 119.590 _refine.B_iso_min 16.140 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.300 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1636 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 38 _refine_hist.number_atoms_total 1675 _refine_hist.d_res_high 2.7000 _refine_hist.d_res_low 37.82 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1687 0.019 0.021 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2306 1.852 1.945 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 216 8.462 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 74 38.597 25.676 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 266 20.010 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 4 15.157 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 268 0.109 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1278 0.008 0.021 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 1063 0.862 1.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1723 1.641 2.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 624 2.414 3.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 582 3.866 4.500 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.7040 _refine_ls_shell.d_res_low 2.7740 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 69.7700 _refine_ls_shell.number_reflns_R_work 539 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2360 _refine_ls_shell.R_factor_R_free 0.4520 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 31 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 570 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3RQ3 _struct.title 'Structure of T-cell immunoreceptor with immunoglobulin and ITIM domains (TIGIT) in hexagonal crystal form' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3RQ3 _struct_keywords.text ;Immune receptor, Ig-domain, adhesion, TIGIT, Structural Genomics, PSI-Biology, New York Structural Genomics Research Consortium, NYSGRC, Atoms-to-Animals: The Immune Function Network, IFN, IMMUNE SYSTEM ; _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 58 ? ASP A 62 ? PRO A 79 ASP A 83 5 ? 5 HELX_P HELX_P2 2 THR A 78 ? THR A 82 ? THR A 99 THR A 103 5 ? 5 HELX_P HELX_P3 3 PHE B 60 ? ASP B 62 ? PHE B 81 ASP B 83 5 ? 3 HELX_P HELX_P4 4 THR B 78 ? THR B 82 ? THR B 99 THR B 103 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 24 SG ? ? ? 1_555 A CYS 87 SG ? ? A CYS 45 A CYS 108 1_555 ? ? ? ? ? ? ? 2.042 ? ? disulf2 disulf ? ? B CYS 24 SG ? ? ? 1_555 B CYS 87 SG ? ? B CYS 45 B CYS 108 1_555 ? ? ? ? ? ? ? 2.026 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 67 A . ? GLY 88 A PRO 68 A ? PRO 89 A 1 1.56 2 TYR 92 A . ? TYR 113 A PRO 93 A ? PRO 114 A 1 -1.16 3 GLY 67 B . ? GLY 88 B PRO 68 B ? PRO 89 B 1 -3.49 4 TYR 92 B . ? TYR 113 B PRO 93 B ? PRO 114 B 1 10.24 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 6 ? C ? 3 ? D ? 2 ? E ? 6 ? F ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? anti-parallel E 5 6 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 5 ? THR A 8 ? THR A 26 THR A 29 A 2 CYS A 24 ? SER A 27 ? CYS A 45 SER A 48 B 1 ILE A 12 ? GLU A 15 ? ILE A 33 GLU A 36 B 2 GLY A 95 ? LEU A 106 ? GLY A 116 LEU A 127 B 3 GLY A 83 ? TYR A 92 ? GLY A 104 TYR A 113 B 4 GLN A 32 ? GLU A 39 ? GLN A 53 GLU A 60 B 5 LEU A 44 ? ASN A 49 ? LEU A 65 ASN A 70 B 6 GLY A 53 ? ILE A 56 ? GLY A 74 ILE A 77 C 1 ILE A 20 ? LEU A 22 ? ILE A 41 LEU A 43 C 2 LEU A 72 ? LEU A 74 ? LEU A 93 LEU A 95 C 3 VAL A 64 ? PRO A 66 ? VAL A 85 PRO A 87 D 1 THR B 5 ? THR B 8 ? THR B 26 THR B 29 D 2 CYS B 24 ? SER B 27 ? CYS B 45 SER B 48 E 1 ASN B 11 ? GLU B 15 ? ASN B 32 GLU B 36 E 2 GLY B 95 ? LEU B 106 ? GLY B 116 LEU B 127 E 3 GLY B 83 ? TYR B 92 ? GLY B 104 TYR B 113 E 4 GLN B 32 ? GLN B 40 ? GLN B 53 GLN B 61 E 5 GLN B 43 ? ASN B 49 ? GLN B 64 ASN B 70 E 6 GLY B 53 ? ILE B 56 ? GLY B 74 ILE B 77 F 1 ILE B 20 ? LEU B 22 ? ILE B 41 LEU B 43 F 2 LEU B 72 ? LEU B 74 ? LEU B 93 LEU B 95 F 3 VAL B 64 ? PRO B 66 ? VAL B 85 PRO B 87 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 5 ? N THR A 26 O SER A 27 ? O SER A 48 B 1 2 N ALA A 14 ? N ALA A 35 O LEU A 106 ? O LEU A 127 B 2 3 O LEU A 103 ? O LEU A 124 N GLY A 83 ? N GLY A 104 B 3 4 O HIS A 90 ? O HIS A 111 N GLN A 35 ? N GLN A 56 B 4 5 N TRP A 38 ? N TRP A 59 O LEU A 45 ? O LEU A 66 B 5 6 N ILE A 47 ? N ILE A 68 O HIS A 55 ? O HIS A 76 C 1 2 N LEU A 22 ? N LEU A 43 O LEU A 72 ? O LEU A 93 C 2 3 O THR A 73 ? O THR A 94 N ALA A 65 ? N ALA A 86 D 1 2 N THR B 5 ? N THR B 26 O SER B 27 ? O SER B 48 E 1 2 N ILE B 12 ? N ILE B 33 O PHE B 102 ? O PHE B 123 E 2 3 O GLY B 99 ? O GLY B 120 N CYS B 87 ? N CYS B 108 E 3 4 O HIS B 90 ? O HIS B 111 N GLN B 35 ? N GLN B 56 E 4 5 N TRP B 38 ? N TRP B 59 O LEU B 45 ? O LEU B 66 E 5 6 N ASN B 49 ? N ASN B 70 O GLY B 53 ? O GLY B 74 F 1 2 N LEU B 22 ? N LEU B 43 O LEU B 72 ? O LEU B 93 F 2 3 O THR B 73 ? O THR B 94 N ALA B 65 ? N ALA B 86 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id CL _struct_site.pdbx_auth_seq_id 138 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'BINDING SITE FOR RESIDUE CL B 138' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id ASN _struct_site_gen.label_asym_id B _struct_site_gen.label_seq_id 49 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id ASN _struct_site_gen.auth_asym_id B _struct_site_gen.auth_seq_id 70 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # _atom_sites.entry_id 3RQ3 _atom_sites.fract_transf_matrix[1][1] 0.008431 _atom_sites.fract_transf_matrix[1][2] 0.004867 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009735 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010184 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 22 ? ? ? A . n A 1 2 MET 2 23 23 MET MET A . n A 1 3 THR 3 24 24 THR THR A . n A 1 4 GLY 4 25 25 GLY GLY A . n A 1 5 THR 5 26 26 THR THR A . n A 1 6 ILE 6 27 27 ILE ILE A . n A 1 7 GLU 7 28 28 GLU GLU A . n A 1 8 THR 8 29 29 THR THR A . n A 1 9 THR 9 30 30 THR THR A . n A 1 10 GLY 10 31 31 GLY GLY A . n A 1 11 ASN 11 32 32 ASN ASN A . n A 1 12 ILE 12 33 33 ILE ILE A . n A 1 13 SER 13 34 34 SER SER A . n A 1 14 ALA 14 35 35 ALA ALA A . n A 1 15 GLU 15 36 36 GLU GLU A . n A 1 16 LYS 16 37 37 LYS LYS A . n A 1 17 GLY 17 38 38 GLY GLY A . n A 1 18 GLY 18 39 39 GLY GLY A . n A 1 19 SER 19 40 40 SER SER A . n A 1 20 ILE 20 41 41 ILE ILE A . n A 1 21 ILE 21 42 42 ILE ILE A . n A 1 22 LEU 22 43 43 LEU LEU A . n A 1 23 GLN 23 44 44 GLN GLN A . n A 1 24 CYS 24 45 45 CYS CYS A . n A 1 25 HIS 25 46 46 HIS HIS A . n A 1 26 LEU 26 47 47 LEU LEU A . n A 1 27 SER 27 48 48 SER SER A . n A 1 28 SER 28 49 49 SER SER A . n A 1 29 THR 29 50 50 THR THR A . n A 1 30 THR 30 51 51 THR THR A . n A 1 31 ALA 31 52 52 ALA ALA A . n A 1 32 GLN 32 53 53 GLN GLN A . n A 1 33 VAL 33 54 54 VAL VAL A . n A 1 34 THR 34 55 55 THR THR A . n A 1 35 GLN 35 56 56 GLN GLN A . n A 1 36 VAL 36 57 57 VAL VAL A . n A 1 37 ASN 37 58 58 ASN ASN A . n A 1 38 TRP 38 59 59 TRP TRP A . n A 1 39 GLU 39 60 60 GLU GLU A . n A 1 40 GLN 40 61 61 GLN GLN A . n A 1 41 GLN 41 62 62 GLN GLN A . n A 1 42 ASP 42 63 63 ASP ASP A . n A 1 43 GLN 43 64 64 GLN GLN A . n A 1 44 LEU 44 65 65 LEU LEU A . n A 1 45 LEU 45 66 66 LEU LEU A . n A 1 46 ALA 46 67 67 ALA ALA A . n A 1 47 ILE 47 68 68 ILE ILE A . n A 1 48 CYS 48 69 69 CYS CYS A . n A 1 49 ASN 49 70 70 ASN ASN A . n A 1 50 ALA 50 71 71 ALA ALA A . n A 1 51 ASP 51 72 72 ASP ASP A . n A 1 52 LEU 52 73 73 LEU LEU A . n A 1 53 GLY 53 74 74 GLY GLY A . n A 1 54 TRP 54 75 75 TRP TRP A . n A 1 55 HIS 55 76 76 HIS HIS A . n A 1 56 ILE 56 77 77 ILE ILE A . n A 1 57 SER 57 78 78 SER SER A . n A 1 58 PRO 58 79 79 PRO PRO A . n A 1 59 SER 59 80 80 SER SER A . n A 1 60 PHE 60 81 81 PHE PHE A . n A 1 61 LYS 61 82 82 LYS LYS A . n A 1 62 ASP 62 83 83 ASP ASP A . n A 1 63 ARG 63 84 84 ARG ARG A . n A 1 64 VAL 64 85 85 VAL VAL A . n A 1 65 ALA 65 86 86 ALA ALA A . n A 1 66 PRO 66 87 87 PRO PRO A . n A 1 67 GLY 67 88 88 GLY GLY A . n A 1 68 PRO 68 89 89 PRO PRO A . n A 1 69 GLY 69 90 90 GLY GLY A . n A 1 70 LEU 70 91 91 LEU LEU A . n A 1 71 GLY 71 92 92 GLY GLY A . n A 1 72 LEU 72 93 93 LEU LEU A . n A 1 73 THR 73 94 94 THR THR A . n A 1 74 LEU 74 95 95 LEU LEU A . n A 1 75 GLN 75 96 96 GLN GLN A . n A 1 76 SER 76 97 97 SER SER A . n A 1 77 LEU 77 98 98 LEU LEU A . n A 1 78 THR 78 99 99 THR THR A . n A 1 79 VAL 79 100 100 VAL VAL A . n A 1 80 ASN 80 101 101 ASN ASN A . n A 1 81 ASP 81 102 102 ASP ASP A . n A 1 82 THR 82 103 103 THR THR A . n A 1 83 GLY 83 104 104 GLY GLY A . n A 1 84 GLU 84 105 105 GLU GLU A . n A 1 85 TYR 85 106 106 TYR TYR A . n A 1 86 PHE 86 107 107 PHE PHE A . n A 1 87 CYS 87 108 108 CYS CYS A . n A 1 88 ILE 88 109 109 ILE ILE A . n A 1 89 TYR 89 110 110 TYR TYR A . n A 1 90 HIS 90 111 111 HIS HIS A . n A 1 91 THR 91 112 112 THR THR A . n A 1 92 TYR 92 113 113 TYR TYR A . n A 1 93 PRO 93 114 114 PRO PRO A . n A 1 94 ASP 94 115 115 ASP ASP A . n A 1 95 GLY 95 116 116 GLY GLY A . n A 1 96 THR 96 117 117 THR THR A . n A 1 97 TYR 97 118 118 TYR TYR A . n A 1 98 THR 98 119 119 THR THR A . n A 1 99 GLY 99 120 120 GLY GLY A . n A 1 100 ARG 100 121 121 ARG ARG A . n A 1 101 ILE 101 122 122 ILE ILE A . n A 1 102 PHE 102 123 123 PHE PHE A . n A 1 103 LEU 103 124 124 LEU LEU A . n A 1 104 GLU 104 125 125 GLU GLU A . n A 1 105 VAL 105 126 126 VAL VAL A . n A 1 106 LEU 106 127 127 LEU LEU A . n A 1 107 GLU 107 128 128 GLU GLU A . n A 1 108 SER 108 129 129 SER SER A . n A 1 109 SER 109 130 ? ? ? A . n A 1 110 VAL 110 131 ? ? ? A . n A 1 111 ALA 111 132 ? ? ? A . n A 1 112 GLU 112 133 ? ? ? A . n A 1 113 HIS 113 134 ? ? ? A . n A 1 114 GLY 114 135 ? ? ? A . n A 1 115 ALA 115 136 ? ? ? A . n A 1 116 ARG 116 137 ? ? ? A . n B 1 1 MET 1 22 22 MET MET B . n B 1 2 MET 2 23 23 MET MET B . n B 1 3 THR 3 24 24 THR THR B . n B 1 4 GLY 4 25 25 GLY GLY B . n B 1 5 THR 5 26 26 THR THR B . n B 1 6 ILE 6 27 27 ILE ILE B . n B 1 7 GLU 7 28 28 GLU GLU B . n B 1 8 THR 8 29 29 THR THR B . n B 1 9 THR 9 30 30 THR THR B . n B 1 10 GLY 10 31 31 GLY GLY B . n B 1 11 ASN 11 32 32 ASN ASN B . n B 1 12 ILE 12 33 33 ILE ILE B . n B 1 13 SER 13 34 34 SER SER B . n B 1 14 ALA 14 35 35 ALA ALA B . n B 1 15 GLU 15 36 36 GLU GLU B . n B 1 16 LYS 16 37 37 LYS LYS B . n B 1 17 GLY 17 38 38 GLY GLY B . n B 1 18 GLY 18 39 39 GLY GLY B . n B 1 19 SER 19 40 40 SER SER B . n B 1 20 ILE 20 41 41 ILE ILE B . n B 1 21 ILE 21 42 42 ILE ILE B . n B 1 22 LEU 22 43 43 LEU LEU B . n B 1 23 GLN 23 44 44 GLN GLN B . n B 1 24 CYS 24 45 45 CYS CYS B . n B 1 25 HIS 25 46 46 HIS HIS B . n B 1 26 LEU 26 47 47 LEU LEU B . n B 1 27 SER 27 48 48 SER SER B . n B 1 28 SER 28 49 49 SER SER B . n B 1 29 THR 29 50 50 THR THR B . n B 1 30 THR 30 51 51 THR THR B . n B 1 31 ALA 31 52 52 ALA ALA B . n B 1 32 GLN 32 53 53 GLN GLN B . n B 1 33 VAL 33 54 54 VAL VAL B . n B 1 34 THR 34 55 55 THR THR B . n B 1 35 GLN 35 56 56 GLN GLN B . n B 1 36 VAL 36 57 57 VAL VAL B . n B 1 37 ASN 37 58 58 ASN ASN B . n B 1 38 TRP 38 59 59 TRP TRP B . n B 1 39 GLU 39 60 60 GLU GLU B . n B 1 40 GLN 40 61 61 GLN GLN B . n B 1 41 GLN 41 62 62 GLN GLN B . n B 1 42 ASP 42 63 63 ASP ASP B . n B 1 43 GLN 43 64 64 GLN GLN B . n B 1 44 LEU 44 65 65 LEU LEU B . n B 1 45 LEU 45 66 66 LEU LEU B . n B 1 46 ALA 46 67 67 ALA ALA B . n B 1 47 ILE 47 68 68 ILE ILE B . n B 1 48 CYS 48 69 69 CYS CYS B . n B 1 49 ASN 49 70 70 ASN ASN B . n B 1 50 ALA 50 71 71 ALA ALA B . n B 1 51 ASP 51 72 72 ASP ASP B . n B 1 52 LEU 52 73 73 LEU LEU B . n B 1 53 GLY 53 74 74 GLY GLY B . n B 1 54 TRP 54 75 75 TRP TRP B . n B 1 55 HIS 55 76 76 HIS HIS B . n B 1 56 ILE 56 77 77 ILE ILE B . n B 1 57 SER 57 78 78 SER SER B . n B 1 58 PRO 58 79 79 PRO PRO B . n B 1 59 SER 59 80 80 SER SER B . n B 1 60 PHE 60 81 81 PHE PHE B . n B 1 61 LYS 61 82 82 LYS LYS B . n B 1 62 ASP 62 83 83 ASP ASP B . n B 1 63 ARG 63 84 84 ARG ARG B . n B 1 64 VAL 64 85 85 VAL VAL B . n B 1 65 ALA 65 86 86 ALA ALA B . n B 1 66 PRO 66 87 87 PRO PRO B . n B 1 67 GLY 67 88 88 GLY GLY B . n B 1 68 PRO 68 89 89 PRO PRO B . n B 1 69 GLY 69 90 90 GLY GLY B . n B 1 70 LEU 70 91 91 LEU LEU B . n B 1 71 GLY 71 92 92 GLY GLY B . n B 1 72 LEU 72 93 93 LEU LEU B . n B 1 73 THR 73 94 94 THR THR B . n B 1 74 LEU 74 95 95 LEU LEU B . n B 1 75 GLN 75 96 96 GLN GLN B . n B 1 76 SER 76 97 97 SER SER B . n B 1 77 LEU 77 98 98 LEU LEU B . n B 1 78 THR 78 99 99 THR THR B . n B 1 79 VAL 79 100 100 VAL VAL B . n B 1 80 ASN 80 101 101 ASN ASN B . n B 1 81 ASP 81 102 102 ASP ASP B . n B 1 82 THR 82 103 103 THR THR B . n B 1 83 GLY 83 104 104 GLY GLY B . n B 1 84 GLU 84 105 105 GLU GLU B . n B 1 85 TYR 85 106 106 TYR TYR B . n B 1 86 PHE 86 107 107 PHE PHE B . n B 1 87 CYS 87 108 108 CYS CYS B . n B 1 88 ILE 88 109 109 ILE ILE B . n B 1 89 TYR 89 110 110 TYR TYR B . n B 1 90 HIS 90 111 111 HIS HIS B . n B 1 91 THR 91 112 112 THR THR B . n B 1 92 TYR 92 113 113 TYR TYR B . n B 1 93 PRO 93 114 114 PRO PRO B . n B 1 94 ASP 94 115 115 ASP ASP B . n B 1 95 GLY 95 116 116 GLY GLY B . n B 1 96 THR 96 117 117 THR THR B . n B 1 97 TYR 97 118 118 TYR TYR B . n B 1 98 THR 98 119 119 THR THR B . n B 1 99 GLY 99 120 120 GLY GLY B . n B 1 100 ARG 100 121 121 ARG ARG B . n B 1 101 ILE 101 122 122 ILE ILE B . n B 1 102 PHE 102 123 123 PHE PHE B . n B 1 103 LEU 103 124 124 LEU LEU B . n B 1 104 GLU 104 125 125 GLU GLU B . n B 1 105 VAL 105 126 126 VAL VAL B . n B 1 106 LEU 106 127 127 LEU LEU B . n B 1 107 GLU 107 128 128 GLU GLU B . n B 1 108 SER 108 129 ? ? ? B . n B 1 109 SER 109 130 ? ? ? B . n B 1 110 VAL 110 131 ? ? ? B . n B 1 111 ALA 111 132 ? ? ? B . n B 1 112 GLU 112 133 ? ? ? B . n B 1 113 HIS 113 134 ? ? ? B . n B 1 114 GLY 114 135 ? ? ? B . n B 1 115 ALA 115 136 ? ? ? B . n B 1 116 ARG 116 137 ? ? ? B . n # loop_ _pdbx_SG_project.id _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.initial_of_center 1 PSI:Biology 'New York Structural Genomics Research Consortium' NYSGRC 2 PSI:Biology 'Atoms-to-Animals: The Immune Function Network' IFN # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL 1 138 138 CL CL B . D 3 HOH 1 138 138 HOH HOH A . D 3 HOH 2 139 139 HOH HOH A . D 3 HOH 3 140 140 HOH HOH A . D 3 HOH 4 141 141 HOH HOH A . D 3 HOH 5 142 142 HOH HOH A . D 3 HOH 6 143 143 HOH HOH A . D 3 HOH 7 144 144 HOH HOH A . D 3 HOH 8 145 145 HOH HOH A . D 3 HOH 9 146 146 HOH HOH A . D 3 HOH 10 147 147 HOH HOH A . D 3 HOH 11 148 148 HOH HOH A . D 3 HOH 12 149 149 HOH HOH A . D 3 HOH 13 150 150 HOH HOH A . D 3 HOH 14 151 151 HOH HOH A . D 3 HOH 15 152 152 HOH HOH A . D 3 HOH 16 153 153 HOH HOH A . D 3 HOH 17 154 154 HOH HOH A . D 3 HOH 18 155 155 HOH HOH A . D 3 HOH 19 156 156 HOH HOH A . D 3 HOH 20 157 157 HOH HOH A . E 3 HOH 1 139 139 HOH HOH B . E 3 HOH 2 140 140 HOH HOH B . E 3 HOH 3 141 141 HOH HOH B . E 3 HOH 4 142 142 HOH HOH B . E 3 HOH 5 143 143 HOH HOH B . E 3 HOH 6 144 144 HOH HOH B . E 3 HOH 7 145 145 HOH HOH B . E 3 HOH 8 146 146 HOH HOH B . E 3 HOH 9 147 147 HOH HOH B . E 3 HOH 10 148 148 HOH HOH B . E 3 HOH 11 149 149 HOH HOH B . E 3 HOH 12 150 150 HOH HOH B . E 3 HOH 13 151 151 HOH HOH B . E 3 HOH 14 152 152 HOH HOH B . E 3 HOH 15 153 153 HOH HOH B . E 3 HOH 16 154 154 HOH HOH B . E 3 HOH 17 155 155 HOH HOH B . E 3 HOH 18 156 156 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1550 ? 1 MORE -17 ? 1 'SSA (A^2)' 10530 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 142 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 51.9990 -25.2660 -6.9810 0.3037 0.2226 0.1403 0.0031 -0.0841 0.0292 4.5047 3.2208 3.6086 0.5671 0.3595 2.1822 -0.0777 0.0387 0.0391 0.0006 0.5991 -0.0106 -0.2717 -0.6227 0.1436 'X-RAY DIFFRACTION' 2 ? refined 26.8620 -31.6860 -9.5510 0.2539 0.2252 0.3065 0.0624 -0.0658 -0.1014 6.7386 2.6871 3.4559 -0.1365 0.5999 -0.1804 -0.0691 0.0081 0.0610 -0.5288 0.6117 0.5600 0.1152 -0.3525 -0.4994 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 23 A 129 ? . . . . ? 'X-RAY DIFFRACTION' 2 1 A 138 A 157 ? . . . . ? 'X-RAY DIFFRACTION' 3 2 B 22 B 128 ? . . . . ? 'X-RAY DIFFRACTION' 4 2 B 138 B 138 ? . . . . ? 'X-RAY DIFFRACTION' 5 2 B 139 B 156 ? . . . . ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 CBASS . ? ? ? ? 'data collection' ? ? ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 MOLREP . ? ? ? ? phasing ? ? ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 CYS _pdbx_validate_rmsd_bond.auth_seq_id_1 69 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 SG _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 CYS _pdbx_validate_rmsd_bond.auth_seq_id_2 69 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.954 _pdbx_validate_rmsd_bond.bond_target_value 1.818 _pdbx_validate_rmsd_bond.bond_deviation 0.136 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.017 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 102 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -46.95 _pdbx_validate_torsion.psi -19.18 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 22 ? A MET 1 2 1 Y 1 A SER 130 ? A SER 109 3 1 Y 1 A VAL 131 ? A VAL 110 4 1 Y 1 A ALA 132 ? A ALA 111 5 1 Y 1 A GLU 133 ? A GLU 112 6 1 Y 1 A HIS 134 ? A HIS 113 7 1 Y 1 A GLY 135 ? A GLY 114 8 1 Y 1 A ALA 136 ? A ALA 115 9 1 Y 1 A ARG 137 ? A ARG 116 10 1 Y 1 B SER 129 ? B SER 108 11 1 Y 1 B SER 130 ? B SER 109 12 1 Y 1 B VAL 131 ? B VAL 110 13 1 Y 1 B ALA 132 ? B ALA 111 14 1 Y 1 B GLU 133 ? B GLU 112 15 1 Y 1 B HIS 134 ? B HIS 113 16 1 Y 1 B GLY 135 ? B GLY 114 17 1 Y 1 B ALA 136 ? B ALA 115 18 1 Y 1 B ARG 137 ? B ARG 116 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 HIS N N N N 138 HIS CA C N S 139 HIS C C N N 140 HIS O O N N 141 HIS CB C N N 142 HIS CG C Y N 143 HIS ND1 N Y N 144 HIS CD2 C Y N 145 HIS CE1 C Y N 146 HIS NE2 N Y N 147 HIS OXT O N N 148 HIS H H N N 149 HIS H2 H N N 150 HIS HA H N N 151 HIS HB2 H N N 152 HIS HB3 H N N 153 HIS HD1 H N N 154 HIS HD2 H N N 155 HIS HE1 H N N 156 HIS HE2 H N N 157 HIS HXT H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 ILE N N N N 162 ILE CA C N S 163 ILE C C N N 164 ILE O O N N 165 ILE CB C N S 166 ILE CG1 C N N 167 ILE CG2 C N N 168 ILE CD1 C N N 169 ILE OXT O N N 170 ILE H H N N 171 ILE H2 H N N 172 ILE HA H N N 173 ILE HB H N N 174 ILE HG12 H N N 175 ILE HG13 H N N 176 ILE HG21 H N N 177 ILE HG22 H N N 178 ILE HG23 H N N 179 ILE HD11 H N N 180 ILE HD12 H N N 181 ILE HD13 H N N 182 ILE HXT H N N 183 LEU N N N N 184 LEU CA C N S 185 LEU C C N N 186 LEU O O N N 187 LEU CB C N N 188 LEU CG C N N 189 LEU CD1 C N N 190 LEU CD2 C N N 191 LEU OXT O N N 192 LEU H H N N 193 LEU H2 H N N 194 LEU HA H N N 195 LEU HB2 H N N 196 LEU HB3 H N N 197 LEU HG H N N 198 LEU HD11 H N N 199 LEU HD12 H N N 200 LEU HD13 H N N 201 LEU HD21 H N N 202 LEU HD22 H N N 203 LEU HD23 H N N 204 LEU HXT H N N 205 LYS N N N N 206 LYS CA C N S 207 LYS C C N N 208 LYS O O N N 209 LYS CB C N N 210 LYS CG C N N 211 LYS CD C N N 212 LYS CE C N N 213 LYS NZ N N N 214 LYS OXT O N N 215 LYS H H N N 216 LYS H2 H N N 217 LYS HA H N N 218 LYS HB2 H N N 219 LYS HB3 H N N 220 LYS HG2 H N N 221 LYS HG3 H N N 222 LYS HD2 H N N 223 LYS HD3 H N N 224 LYS HE2 H N N 225 LYS HE3 H N N 226 LYS HZ1 H N N 227 LYS HZ2 H N N 228 LYS HZ3 H N N 229 LYS HXT H N N 230 MET N N N N 231 MET CA C N S 232 MET C C N N 233 MET O O N N 234 MET CB C N N 235 MET CG C N N 236 MET SD S N N 237 MET CE C N N 238 MET OXT O N N 239 MET H H N N 240 MET H2 H N N 241 MET HA H N N 242 MET HB2 H N N 243 MET HB3 H N N 244 MET HG2 H N N 245 MET HG3 H N N 246 MET HE1 H N N 247 MET HE2 H N N 248 MET HE3 H N N 249 MET HXT H N N 250 PHE N N N N 251 PHE CA C N S 252 PHE C C N N 253 PHE O O N N 254 PHE CB C N N 255 PHE CG C Y N 256 PHE CD1 C Y N 257 PHE CD2 C Y N 258 PHE CE1 C Y N 259 PHE CE2 C Y N 260 PHE CZ C Y N 261 PHE OXT O N N 262 PHE H H N N 263 PHE H2 H N N 264 PHE HA H N N 265 PHE HB2 H N N 266 PHE HB3 H N N 267 PHE HD1 H N N 268 PHE HD2 H N N 269 PHE HE1 H N N 270 PHE HE2 H N N 271 PHE HZ H N N 272 PHE HXT H N N 273 PRO N N N N 274 PRO CA C N S 275 PRO C C N N 276 PRO O O N N 277 PRO CB C N N 278 PRO CG C N N 279 PRO CD C N N 280 PRO OXT O N N 281 PRO H H N N 282 PRO HA H N N 283 PRO HB2 H N N 284 PRO HB3 H N N 285 PRO HG2 H N N 286 PRO HG3 H N N 287 PRO HD2 H N N 288 PRO HD3 H N N 289 PRO HXT H N N 290 SER N N N N 291 SER CA C N S 292 SER C C N N 293 SER O O N N 294 SER CB C N N 295 SER OG O N N 296 SER OXT O N N 297 SER H H N N 298 SER H2 H N N 299 SER HA H N N 300 SER HB2 H N N 301 SER HB3 H N N 302 SER HG H N N 303 SER HXT H N N 304 THR N N N N 305 THR CA C N S 306 THR C C N N 307 THR O O N N 308 THR CB C N R 309 THR OG1 O N N 310 THR CG2 C N N 311 THR OXT O N N 312 THR H H N N 313 THR H2 H N N 314 THR HA H N N 315 THR HB H N N 316 THR HG1 H N N 317 THR HG21 H N N 318 THR HG22 H N N 319 THR HG23 H N N 320 THR HXT H N N 321 TRP N N N N 322 TRP CA C N S 323 TRP C C N N 324 TRP O O N N 325 TRP CB C N N 326 TRP CG C Y N 327 TRP CD1 C Y N 328 TRP CD2 C Y N 329 TRP NE1 N Y N 330 TRP CE2 C Y N 331 TRP CE3 C Y N 332 TRP CZ2 C Y N 333 TRP CZ3 C Y N 334 TRP CH2 C Y N 335 TRP OXT O N N 336 TRP H H N N 337 TRP H2 H N N 338 TRP HA H N N 339 TRP HB2 H N N 340 TRP HB3 H N N 341 TRP HD1 H N N 342 TRP HE1 H N N 343 TRP HE3 H N N 344 TRP HZ2 H N N 345 TRP HZ3 H N N 346 TRP HH2 H N N 347 TRP HXT H N N 348 TYR N N N N 349 TYR CA C N S 350 TYR C C N N 351 TYR O O N N 352 TYR CB C N N 353 TYR CG C Y N 354 TYR CD1 C Y N 355 TYR CD2 C Y N 356 TYR CE1 C Y N 357 TYR CE2 C Y N 358 TYR CZ C Y N 359 TYR OH O N N 360 TYR OXT O N N 361 TYR H H N N 362 TYR H2 H N N 363 TYR HA H N N 364 TYR HB2 H N N 365 TYR HB3 H N N 366 TYR HD1 H N N 367 TYR HD2 H N N 368 TYR HE1 H N N 369 TYR HE2 H N N 370 TYR HH H N N 371 TYR HXT H N N 372 VAL N N N N 373 VAL CA C N S 374 VAL C C N N 375 VAL O O N N 376 VAL CB C N N 377 VAL CG1 C N N 378 VAL CG2 C N N 379 VAL OXT O N N 380 VAL H H N N 381 VAL H2 H N N 382 VAL HA H N N 383 VAL HB H N N 384 VAL HG11 H N N 385 VAL HG12 H N N 386 VAL HG13 H N N 387 VAL HG21 H N N 388 VAL HG22 H N N 389 VAL HG23 H N N 390 VAL HXT H N N 391 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3Q0H _pdbx_initial_refinement_model.details ? #