HEADER SIGNALING PROTEIN 02-MAY-11 3RRY TITLE H-RAS CROSSLINKED CONTROL, SOAKED IN AQUEOUS SOLUTION: ONE OF 10 IN TITLE 2 MSCS SET COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-RAS-1, HA-RAS, TRANSFORMING PROTEIN P21, C-H-RAS, P21RAS, COMPND 5 GTPASE HRAS, N-TERMINALLY PROCESSED; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS GTP-BINDING, NUCLEOTIDE BINDING, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.MATTOS,G.BUHRMAN,B.KEARNEY REVDAT 5 28-FEB-24 3RRY 1 REMARK LINK REVDAT 4 08-NOV-17 3RRY 1 REMARK REVDAT 3 09-NOV-11 3RRY 1 JRNL REVDAT 2 12-OCT-11 3RRY 1 JRNL REVDAT 1 21-SEP-11 3RRY 0 JRNL AUTH G.BUHRMAN,C.O CONNOR,B.ZERBE,B.M.KEARNEY,R.NAPOLEON, JRNL AUTH 2 E.A.KOVRIGINA,S.VAJDA,D.KOZAKOV,E.L.KOVRIGIN,C.MATTOS JRNL TITL ANALYSIS OF BINDING SITE HOT SPOTS ON THE SURFACE OF RAS JRNL TITL 2 GTPASE. JRNL REF J.MOL.BIOL. V. 413 773 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21945529 JRNL DOI 10.1016/J.JMB.2011.09.011 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7_650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 25152 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.810 REMARK 3 FREE R VALUE TEST SET COUNT : 2467 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.6831 - 4.1857 0.90 1303 149 0.1865 0.1900 REMARK 3 2 4.1857 - 3.3243 0.96 1359 132 0.1692 0.1685 REMARK 3 3 3.3243 - 2.9047 0.97 1338 156 0.1893 0.1944 REMARK 3 4 2.9047 - 2.6394 0.97 1320 160 0.1893 0.2001 REMARK 3 5 2.6394 - 2.4503 0.97 1315 157 0.1845 0.2159 REMARK 3 6 2.4503 - 2.3059 0.97 1341 138 0.1932 0.2110 REMARK 3 7 2.3059 - 2.1905 0.96 1300 135 0.1864 0.2159 REMARK 3 8 2.1905 - 2.0952 0.96 1325 131 0.1807 0.2173 REMARK 3 9 2.0952 - 2.0146 0.95 1295 125 0.1878 0.2257 REMARK 3 10 2.0146 - 1.9451 0.93 1278 129 0.1868 0.2269 REMARK 3 11 1.9451 - 1.8843 0.93 1259 138 0.1844 0.2050 REMARK 3 12 1.8843 - 1.8304 0.93 1234 152 0.1794 0.2153 REMARK 3 13 1.8304 - 1.7822 0.92 1248 136 0.1776 0.2337 REMARK 3 14 1.7822 - 1.7388 0.90 1225 125 0.1904 0.2313 REMARK 3 15 1.7388 - 1.6993 0.88 1183 140 0.2066 0.2361 REMARK 3 16 1.6993 - 1.6631 0.87 1170 135 0.2002 0.2481 REMARK 3 17 1.6631 - 1.6298 0.83 1116 132 0.2095 0.2606 REMARK 3 18 1.6298 - 1.6000 0.78 1076 97 0.2371 0.2983 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.40 REMARK 3 SHRINKAGE RADIUS : 1.17 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 60.57 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17670 REMARK 3 B22 (A**2) : -0.17670 REMARK 3 B33 (A**2) : 0.35340 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1386 REMARK 3 ANGLE : 1.141 1883 REMARK 3 CHIRALITY : 0.071 209 REMARK 3 PLANARITY : 0.004 243 REMARK 3 DIHEDRAL : 15.791 521 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RRY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065305. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25152 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % PEG 3350, 200MM CALCIUM CHLORIDE, REMARK 280 PH 7.5, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 44.36300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 25.61299 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 45.01700 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 44.36300 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 25.61299 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 45.01700 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 44.36300 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 25.61299 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 45.01700 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 44.36300 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 25.61299 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 45.01700 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 44.36300 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 25.61299 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 45.01700 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 44.36300 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 25.61299 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 45.01700 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.22598 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 90.03400 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 51.22598 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 90.03400 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 51.22598 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 90.03400 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 51.22598 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 90.03400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 51.22598 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 90.03400 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 51.22598 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 90.03400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 194 LIES ON A SPECIAL POSITION. REMARK 375 CA CA A 191 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 370 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 378 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 392 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 396 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 407 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 432 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 SER A 65 OG REMARK 470 MET A 67 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 404 O HOH A 404 16453 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 36 -87.35 -87.49 REMARK 500 ALA A 66 -110.12 -1.73 REMARK 500 MET A 67 45.29 -102.79 REMARK 500 ARG A 149 -0.71 78.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 192 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 82.1 REMARK 620 3 GNP A 190 O2G 172.1 91.2 REMARK 620 4 GNP A 190 O2B 91.7 173.3 95.2 REMARK 620 5 HOH A 301 O 91.1 89.5 92.9 87.9 REMARK 620 6 HOH A 303 O 84.4 92.3 91.8 89.7 174.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 31 OE2 REMARK 620 2 ASP A 33 OD2 105.9 REMARK 620 3 ASP A 33 OD1 80.2 51.8 REMARK 620 4 HOH A 319 O 87.2 76.4 119.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 191 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 102 O REMARK 620 2 ASP A 105 OD1 89.4 REMARK 620 3 ASP A 105 OD2 74.3 44.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 194 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 342 O REMARK 620 2 HOH A 364 O 70.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 190 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 192 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 194 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 191 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RRZ RELATED DB: PDB REMARK 900 H-RAS SOAKED IN 70% GLYCEROL: 1 OF 10 IN MSCS SET REMARK 900 RELATED ID: 3RS0 RELATED DB: PDB REMARK 900 H-RAS SOAKED IN NEAT CYCLOPENTANOL: 1 OF 10 IN MSCS SET REMARK 900 RELATED ID: 3RS2 RELATED DB: PDB REMARK 900 H-RAS SOAKED IN 50% TRIFLUOROETHANOL: 1 OF 10 IN MSCS SET REMARK 900 RELATED ID: 3RS3 RELATED DB: PDB REMARK 900 H-RAS SOAKED IN NEAT HEXANE: 1 OF 10 IN MSCS SET REMARK 900 RELATED ID: 3RS4 RELATED DB: PDB REMARK 900 H-RAS SOAKED IN 60% 1,6-HEXANEDIOL: 1 OF 10 IN MSCS SET REMARK 900 RELATED ID: 3RS5 RELATED DB: PDB REMARK 900 H-RAS SOAKED IN 55% DIMETHYLFORMAMIDE: 1 OF 10 IN MSCS SET REMARK 900 RELATED ID: 3RS7 RELATED DB: PDB REMARK 900 H-RAS SOAKED IN 50% ISOPROPANOL: 1 OF 10 IN MSCS SET REMARK 900 RELATED ID: 3RSL RELATED DB: PDB REMARK 900 H-RAS SOAKED IN 90% R,S,R-BISFURANOL: 1 OF 10 IN MSCS SET REMARK 900 RELATED ID: 3RSO RELATED DB: PDB REMARK 900 H-RAS SOAKED IN 20% S,R,S-BISFURANOL: 1 OF 10 IN MSCS SET DBREF 3RRY A 1 166 UNP P01112 RASH_HUMAN 1 166 SEQRES 1 A 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY SEQRES 2 A 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 A 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 A 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 A 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 A 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 A 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 A 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS HET GNP A 190 32 HET CA A 202 1 HET MG A 192 1 HET MG A 194 1 HET CA A 191 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION FORMUL 2 GNP C10 H17 N6 O13 P3 FORMUL 3 CA 2(CA 2+) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *124(H2 O) HELIX 1 1 GLY A 15 ASN A 26 1 12 HELIX 2 2 GLN A 61 SER A 65 5 5 HELIX 3 3 MET A 67 ARG A 73 1 7 HELIX 4 4 ASN A 86 ASP A 92 1 7 HELIX 5 5 ASP A 92 ASP A 105 1 14 HELIX 6 6 GLU A 126 GLY A 138 1 13 HELIX 7 7 GLY A 151 HIS A 166 1 16 SHEET 1 A 6 GLU A 37 ILE A 46 0 SHEET 2 A 6 GLU A 49 THR A 58 -1 O CYS A 51 N VAL A 44 SHEET 3 A 6 THR A 2 GLY A 10 1 N THR A 2 O LEU A 52 SHEET 4 A 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 A 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 A 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 LINK OG SER A 17 MG MG A 192 1555 1555 2.15 LINK OE2 GLU A 31 CA CA A 202 1555 1555 2.41 LINK OD2 ASP A 33 CA CA A 202 1555 1555 2.47 LINK OD1 ASP A 33 CA CA A 202 1555 1555 2.52 LINK OG1 THR A 35 MG MG A 192 1555 1555 2.12 LINK O ARG A 102 CA CA A 191 1555 1555 2.44 LINK OD1 ASP A 105 CA CA A 191 1555 1555 2.81 LINK OD2 ASP A 105 CA CA A 191 1555 1555 2.95 LINK O2G GNP A 190 MG MG A 192 1555 1555 2.06 LINK O2B GNP A 190 MG MG A 192 1555 1555 2.11 LINK MG MG A 192 O HOH A 301 1555 1555 2.17 LINK MG MG A 192 O HOH A 303 1555 1555 2.11 LINK MG MG A 194 O HOH A 342 1555 1555 2.73 LINK MG MG A 194 O HOH A 364 1555 1555 2.72 LINK CA CA A 202 O HOH A 319 1555 1555 2.46 SITE 1 AC1 31 GLY A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC1 31 LYS A 16 SER A 17 ALA A 18 PHE A 28 SITE 3 AC1 31 VAL A 29 ASP A 30 GLU A 31 TYR A 32 SITE 4 AC1 31 PRO A 34 THR A 35 GLY A 60 ASN A 116 SITE 5 AC1 31 LYS A 117 ASP A 119 LEU A 120 SER A 145 SITE 6 AC1 31 ALA A 146 LYS A 147 MG A 192 HOH A 301 SITE 7 AC1 31 HOH A 303 HOH A 304 HOH A 305 HOH A 327 SITE 8 AC1 31 HOH A 334 HOH A 390 HOH A 428 SITE 1 AC2 6 PHE A 28 ASP A 30 GLU A 31 ASP A 33 SITE 2 AC2 6 HOH A 309 HOH A 319 SITE 1 AC3 5 SER A 17 THR A 35 GNP A 190 HOH A 301 SITE 2 AC3 5 HOH A 303 SITE 1 AC4 3 HOH A 342 HOH A 364 HOH A 432 SITE 1 AC5 2 ARG A 102 ASP A 105 CRYST1 88.726 88.726 135.051 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011271 0.006507 0.000000 0.00000 SCALE2 0.000000 0.013014 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007405 0.00000