HEADER SIGNALING PROTEIN 02-MAY-11 3RS5 TITLE H-RAS SOAKED IN 55% DIMETHYLFORMAMIDE: 1 OF 10 IN MSCS SET COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-RAS-1, HA-RAS, TRANSFORMING PROTEIN P21, C-H-RAS, P21RAS, COMPND 5 GTPASE HRAS, N-TERMINALLY PROCESSED; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS GTP-BINDING, NUCLEOTIDE BINDING, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.MATTOS,G.BUHRMAN,B.KEARNEY REVDAT 5 28-FEB-24 3RS5 1 REMARK LINK REVDAT 4 08-NOV-17 3RS5 1 REMARK REVDAT 3 09-NOV-11 3RS5 1 JRNL REVDAT 2 12-OCT-11 3RS5 1 JRNL REVDAT 1 21-SEP-11 3RS5 0 JRNL AUTH G.BUHRMAN,C.O CONNOR,B.ZERBE,B.M.KEARNEY,R.NAPOLEON, JRNL AUTH 2 E.A.KOVRIGINA,S.VAJDA,D.KOZAKOV,E.L.KOVRIGIN,C.MATTOS JRNL TITL ANALYSIS OF BINDING SITE HOT SPOTS ON THE SURFACE OF RAS JRNL TITL 2 GTPASE. JRNL REF J.MOL.BIOL. V. 413 773 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21945529 JRNL DOI 10.1016/J.JMB.2011.09.011 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7_650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 23320 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.850 REMARK 3 FREE R VALUE TEST SET COUNT : 2297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.2227 - 4.2252 0.98 1355 171 0.1850 0.2033 REMARK 3 2 4.2252 - 3.3574 1.00 1357 144 0.1596 0.1607 REMARK 3 3 3.3574 - 2.9341 1.00 1328 141 0.1635 0.1607 REMARK 3 4 2.9341 - 2.6663 1.00 1353 125 0.1736 0.1729 REMARK 3 5 2.6663 - 2.4754 1.00 1315 141 0.1627 0.1877 REMARK 3 6 2.4754 - 2.3297 1.00 1311 144 0.1622 0.1877 REMARK 3 7 2.3297 - 2.2131 1.00 1321 143 0.1532 0.1982 REMARK 3 8 2.2131 - 2.1168 1.00 1322 140 0.1566 0.1815 REMARK 3 9 2.1168 - 2.0354 1.00 1309 145 0.1477 0.1902 REMARK 3 10 2.0354 - 1.9652 1.00 1287 151 0.1493 0.1646 REMARK 3 11 1.9652 - 1.9038 1.00 1291 144 0.1365 0.1646 REMARK 3 12 1.9038 - 1.8494 0.99 1289 143 0.1397 0.1796 REMARK 3 13 1.8494 - 1.8007 0.99 1271 162 0.1495 0.1800 REMARK 3 14 1.8007 - 1.7568 1.00 1310 142 0.1584 0.1936 REMARK 3 15 1.7568 - 1.7169 0.99 1295 131 0.1741 0.2112 REMARK 3 16 1.7169 - 1.6800 0.99 1309 130 0.1806 0.2446 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 60.46 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.31320 REMARK 3 B22 (A**2) : -0.31320 REMARK 3 B33 (A**2) : 0.62630 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1381 REMARK 3 ANGLE : 1.166 1869 REMARK 3 CHIRALITY : 0.077 207 REMARK 3 PLANARITY : 0.008 242 REMARK 3 DIHEDRAL : 15.814 509 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RS5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065312. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23412 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.11800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % PEG 3350, 200MM CALCIUM CHLORIDE, REMARK 280 PH 7.5, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 44.26550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 25.55670 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 44.98267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 44.26550 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 25.55670 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 44.98267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 44.26550 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 25.55670 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 44.98267 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 44.26550 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 25.55670 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.98267 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 44.26550 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 25.55670 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 44.98267 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 44.26550 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 25.55670 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.98267 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.11340 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 89.96533 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 51.11340 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 89.96533 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 51.11340 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 89.96533 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 51.11340 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.96533 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 51.11340 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 89.96533 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 51.11340 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 89.96533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 195 LIES ON A SPECIAL POSITION. REMARK 375 MG MG A 194 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 392 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 393 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 407 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 440 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 MET A 67 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 36 -80.54 -89.33 REMARK 500 ALA A 66 122.16 -38.07 REMARK 500 ARG A 149 -2.54 76.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 192 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 84.7 REMARK 620 3 GNP A 190 O2G 174.7 90.5 REMARK 620 4 GNP A 190 O2B 91.5 175.0 93.4 REMARK 620 5 HOH A 301 O 89.6 89.0 92.7 87.7 REMARK 620 6 HOH A 303 O 85.9 90.2 91.7 92.8 175.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 193 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 28 O REMARK 620 2 ASP A 30 OD2 85.1 REMARK 620 3 HOH A 309 O 88.6 86.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 195 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 102 O REMARK 620 2 ASP A 105 OD1 91.7 REMARK 620 3 ASP A 105 OD2 88.4 48.6 REMARK 620 4 HOH A 393 O 90.2 89.2 137.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 194 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 342 O REMARK 620 2 HOH A 364 O 77.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 190 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMF A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMF A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMF A 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMF A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 193 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 195 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 192 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 194 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RRY RELATED DB: PDB REMARK 900 H-RAS CROSSLINKED AND SOAKED IN AQUEOUS SOLUTION: 1 OF 10 IN MSCS REMARK 900 SET REMARK 900 RELATED ID: 3RRZ RELATED DB: PDB REMARK 900 H-RAS SOAKED IN 70% GLYCEROL: 1 OF 10 IN MSCS SET REMARK 900 RELATED ID: 3RS0 RELATED DB: PDB REMARK 900 H-RAS SOAKED IN NEAT CYCLOPENTANOL: 1 OF 10 IN MSCS SET REMARK 900 RELATED ID: 3RS2 RELATED DB: PDB REMARK 900 H-RAS SOAKED IN 50% TRIFLUOROETHANOL: 1 OF 10 IN MSCS SET REMARK 900 RELATED ID: 3RS3 RELATED DB: PDB REMARK 900 H-RAS SOAKED IN NEAT HEXANE: 1 OF 10 IN MSCS SET REMARK 900 RELATED ID: 3RS4 RELATED DB: PDB REMARK 900 H-RAS SOAKED IN 60% 1,6-HEXANEDIOL: 1 OF 10 IN MSCS SET REMARK 900 RELATED ID: 3RS7 RELATED DB: PDB REMARK 900 H-RAS SOAKED IN 50% ISOPROPANOL: 1 OF 10 IN MSCS SET REMARK 900 RELATED ID: 3RSL RELATED DB: PDB REMARK 900 H-RAS SOAKED IN 90% R,S,R-BISFURANOL: 1 OF 10 IN MSCS SET REMARK 900 RELATED ID: 3RSO RELATED DB: PDB REMARK 900 H-RAS SOAKED IN 20% S,R,S-BISFURANOL: 1 OF 10 IN MSCS SET DBREF 3RS5 A 1 166 UNP P01112 RASH_HUMAN 1 166 SEQRES 1 A 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY SEQRES 2 A 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 A 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 A 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 A 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 A 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 A 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 A 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS HET GNP A 190 32 HET DMF A 201 5 HET DMF A 203 5 HET DMF A 220 5 HET DMF A 202 5 HET CA A 193 1 HET CA A 195 1 HET MG A 192 1 HET MG A 194 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM DMF DIMETHYLFORMAMIDE HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION FORMUL 2 GNP C10 H17 N6 O13 P3 FORMUL 3 DMF 4(C3 H7 N O) FORMUL 7 CA 2(CA 2+) FORMUL 9 MG 2(MG 2+) FORMUL 11 HOH *127(H2 O) HELIX 1 1 GLY A 15 ASN A 26 1 12 HELIX 2 2 GLN A 61 SER A 65 5 5 HELIX 3 3 MET A 67 ARG A 73 1 7 HELIX 4 4 ASN A 86 ASP A 92 1 7 HELIX 5 5 ASP A 92 ASP A 105 1 14 HELIX 6 6 GLU A 126 GLY A 138 1 13 HELIX 7 7 GLY A 151 ARG A 164 1 14 SHEET 1 A 6 GLU A 37 ILE A 46 0 SHEET 2 A 6 GLU A 49 THR A 58 -1 O ASP A 57 N ASP A 38 SHEET 3 A 6 THR A 2 VAL A 9 1 N TYR A 4 O LEU A 52 SHEET 4 A 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 A 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 A 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 LINK OG SER A 17 MG MG A 192 1555 1555 2.12 LINK O PHE A 28 CA CA A 193 1555 1555 2.36 LINK OD2 ASP A 30 CA CA A 193 1555 1555 2.41 LINK OG1 THR A 35 MG MG A 192 1555 1555 2.14 LINK O ARG A 102 CA CA A 195 1555 1555 2.33 LINK OD1 ASP A 105 CA CA A 195 1555 1555 2.55 LINK OD2 ASP A 105 CA CA A 195 1555 1555 2.77 LINK O2G GNP A 190 MG MG A 192 1555 1555 2.03 LINK O2B GNP A 190 MG MG A 192 1555 1555 2.12 LINK MG MG A 192 O HOH A 301 1555 1555 2.20 LINK MG MG A 192 O HOH A 303 1555 1555 2.13 LINK CA CA A 193 O HOH A 309 1555 1555 2.49 LINK MG MG A 194 O HOH A 342 1555 1555 2.54 LINK MG MG A 194 O HOH A 364 1555 1555 2.51 LINK CA CA A 195 O HOH A 393 1555 1555 2.76 SITE 1 AC1 30 GLY A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC1 30 LYS A 16 SER A 17 ALA A 18 PHE A 28 SITE 3 AC1 30 VAL A 29 ASP A 30 GLU A 31 TYR A 32 SITE 4 AC1 30 PRO A 34 THR A 35 GLY A 60 ASN A 116 SITE 5 AC1 30 LYS A 117 ASP A 119 LEU A 120 SER A 145 SITE 6 AC1 30 ALA A 146 LYS A 147 MG A 192 HOH A 301 SITE 7 AC1 30 HOH A 303 HOH A 304 HOH A 305 HOH A 333 SITE 8 AC1 30 HOH A 334 HOH A 390 SITE 1 AC2 2 GLN A 95 TYR A 96 SITE 1 AC3 5 ILE A 21 GLN A 25 HIS A 27 VAL A 29 SITE 2 AC3 5 TYR A 40 SITE 1 AC4 6 GLY A 138 GLU A 162 GLN A 165 HIS A 166 SITE 2 AC4 6 HOH A 347 HOH A 422 SITE 1 AC5 5 HIS A 94 LEU A 120 ALA A 121 SER A 136 SITE 2 AC5 5 HOH A 435 SITE 1 AC6 6 PHE A 28 ASP A 30 GLU A 31 ASP A 33 SITE 2 AC6 6 HOH A 309 HOH A 319 SITE 1 AC7 3 ARG A 102 ASP A 105 HOH A 393 SITE 1 AC8 5 SER A 17 THR A 35 GNP A 190 HOH A 301 SITE 2 AC8 5 HOH A 303 SITE 1 AC9 3 HOH A 342 HOH A 364 HOH A 440 CRYST1 88.531 88.531 134.948 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011295 0.006521 0.000000 0.00000 SCALE2 0.000000 0.013043 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007410 0.00000