HEADER SUGAR BINDING PROTEIN 02-MAY-11 3RS6 TITLE CRYSTAL STRUCTURE DIOCLEA VIRGATA LECTIN IN COMPLEXED WITH X-MANNOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LECTIN BETA CHAIN, LECTIN GAMMA-1 CHAIN, LECTIN GAMMA-2 COMPND 5 CHAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DIOCLEA VIRGATA; SOURCE 3 ORGANISM_TAXID: 167618 KEYWDS LECTIN, LEGUMINOSE, CARBOYDRATE BINDING PROTEIN, X-MANNOSE, SEED KEYWDS 2 DIOCLEA VIRGATA, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.A.A.GADELHA,T.SANTI-GADELHA,C.S.NAGANO,E.H.S.BEZERRA,M.J.B.BEZERRA, AUTHOR 2 K.L.ALENCAR,J.C.SILVA-FILHO REVDAT 5 28-FEB-24 3RS6 1 HETSYN REVDAT 4 29-JUL-20 3RS6 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 24-JAN-18 3RS6 1 AUTHOR REVDAT 2 22-FEB-12 3RS6 1 JRNL REVDAT 1 08-FEB-12 3RS6 0 JRNL AUTH R.BATISTA DA NOBREGA,B.A.ROCHA,C.A.GADELHA,T.SANTI-GADELHA, JRNL AUTH 2 A.F.PIRES,A.M.ASSREUY,K.S.NASCIMENTO,C.S.NAGANO,A.H.SAMPAIO, JRNL AUTH 3 B.S.CAVADA,P.DELATORRE JRNL TITL STRUCTURE OF DIOCLEA VIRGATA LECTIN: RELATIONS BETWEEN JRNL TITL 2 CARBOHYDRATE BINDING SITE AND NITRIC OXIDE PRODUCTION. JRNL REF BIOCHIMIE V. 94 900 2012 JRNL REFN ISSN 0300-9084 JRNL PMID 22198239 JRNL DOI 10.1016/J.BIOCHI.2011.12.009 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 22528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1211 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1513 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1761 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 163 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.550 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1825 ; 0.024 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2492 ; 2.710 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 230 ; 7.886 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 74 ;37.087 ;24.324 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 276 ;15.366 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;12.614 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 290 ; 0.236 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1377 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1179 ; 1.542 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1912 ; 2.588 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 684 ; 4.095 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 631 ; 5.657 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3RS6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065313. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.42 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23748 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 21.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LECTIN WAS RESUSPENDED IN 1 MM TRIS REMARK 280 HCL BUFFER PH 7.0 CONTAINING 5 MM CACL2 AND 5 MM MNCL2 IN A REMARK 280 FINAL CONCENTRATION OF 10 MG ML 1.NATIVE LECTIN WAS RESUSPENDED REMARK 280 IN MILLI-Q WATER IN A FINAL CONCENTRATION OF 12 MG ML 1 AND 3 MM REMARK 280 OF X-MAN (5-BROMO-4-CHLORO-3- APPL BIOCHEM BIOTECHNOL INDOLYL- - REMARK 280 D-MANNOSE), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.27500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.34500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 45.14000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.27500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.34500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.14000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.27500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.34500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.14000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.27500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.34500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 45.14000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -133.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 385 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 118 REMARK 465 SER A 119 REMARK 465 ILE A 120 REMARK 465 ALA A 121 REMARK 465 ASP A 122 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 87 O HOH A 344 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 149 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 218 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 LEU A 229 CB - CG - CD1 ANGL. DEV. = 10.5 DEGREES REMARK 500 LEU A 230 CB - CG - CD1 ANGL. DEV. = 12.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 238 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE2 REMARK 620 2 ASP A 10 OD2 94.6 REMARK 620 3 ASP A 19 OD1 169.1 93.9 REMARK 620 4 HIS A 24 NE2 94.1 86.2 93.3 REMARK 620 5 HOH A 256 O 86.6 94.2 85.9 179.1 REMARK 620 6 HOH A 276 O 85.2 173.1 87.3 87.0 92.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 239 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD1 REMARK 620 2 ASP A 10 OD2 52.4 REMARK 620 3 TYR A 12 O 75.8 108.9 REMARK 620 4 ASN A 14 OD1 149.0 158.5 83.2 REMARK 620 5 ASP A 19 OD2 111.7 79.3 79.2 86.0 REMARK 620 6 HOH A 254 O 114.7 77.2 169.1 88.3 93.5 REMARK 620 7 HOH A 292 O 72.2 110.8 91.2 85.8 168.0 94.9 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RRD RELATED DB: PDB DBREF 3RS6 A 1 237 UNP P58907 LECA_DIOVI 1 237 SEQRES 1 A 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP SER TYR PRO SEQRES 2 A 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 A 237 ILE ASP ILE LYS SER VAL ARG SER LYS SER THR ALA ARG SEQRES 4 A 237 TRP ASN MET GLN THR GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 A 237 SER TYR ASN SER VAL ALA LYS ARG LEU SER ALA VAL VAL SEQRES 6 A 237 SER TYR THR GLY SER SER SER THR THR VAL SER TYR ASP SEQRES 7 A 237 VAL ASP LEU ASN ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 A 237 GLY LEU SER ALA THR THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 A 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS THR SEQRES 10 A 237 ASN SER ILE ALA ASP ALA ASN SER LEU HIS PHE SER PHE SEQRES 11 A 237 ASN GLN PHE SER GLN ASN PRO LYS ASP LEU ILE LEU GLN SEQRES 12 A 237 GLY ASP ALA THR THR ASP SER ASP GLY ASN LEU GLN LEU SEQRES 13 A 237 THR ARG VAL SER SER ASP GLY SER PRO GLN GLY SER SER SEQRES 14 A 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 A 237 GLU LYS SER ALA VAL VAL ALA SER PHE ASP ALA THR PHE SEQRES 16 A 237 THR PHE LEU ILE LYS SER PRO ASP ARG ASP PRO ALA ASP SEQRES 17 A 237 GLY ILE THR PHE PHE ILE ALA ASN THR ASP THR SER ILE SEQRES 18 A 237 PRO SER GLY SER GLY GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 A 237 ASP ALA ASN HET MN A 238 1 HET CA A 239 1 HET XMM A 241 23 HETNAM MN MANGANESE (II) ION HETNAM CA CALCIUM ION HETNAM XMM 5-BROMO-4-CHLORO-1H-INDOL-3-YL ALPHA-D-MANNOPYRANOSIDE HETSYN XMM (2R,3S,4S,5S,6R)-2-(5-BROMO-4-CHLORO-1H-INDOL-3-YLOXY)- HETSYN 2 XMM TETRAHYDRO-6-(HYDROXYMETHYL)-2H-PYRAN-3,4,5-TRIOL; (5- HETSYN 3 XMM BROMO-4-CHLORO-3-INDOLYL)-ALPHA-D-MANNOSE; 5-BROMO-4- HETSYN 4 XMM CHLORO-1H-INDOL-3-YL ALPHA-D-MANNOSIDE; 5-BROMO-4- HETSYN 5 XMM CHLORO-1H-INDOL-3-YL D-MANNOSIDE; 5-BROMO-4-CHLORO-1H- HETSYN 6 XMM INDOL-3-YL MANNOSIDE FORMUL 2 MN MN 2+ FORMUL 3 CA CA 2+ FORMUL 4 XMM C14 H15 BR CL N O6 FORMUL 5 HOH *163(H2 O) HELIX 1 1 ASN A 14 GLY A 18 5 5 HELIX 2 2 ASP A 80 LEU A 85 1 6 HELIX 3 3 GLY A 226 LEU A 230 5 5 SHEET 1 A 7 SER A 36 ARG A 39 0 SHEET 2 A 7 HIS A 24 ILE A 29 -1 N ILE A 25 O ALA A 38 SHEET 3 A 7 ILE A 4 ASP A 10 -1 N ALA A 6 O ASP A 28 SHEET 4 A 7 GLY A 209 ASN A 216 -1 O ILE A 210 N LEU A 9 SHEET 5 A 7 TRP A 88 THR A 96 -1 N GLY A 92 O PHE A 213 SHEET 6 A 7 VAL A 170 PHE A 175 -1 O PHE A 175 N VAL A 91 SHEET 7 A 7 LEU A 140 GLY A 144 -1 N GLN A 143 O ARG A 172 SHEET 1 B 6 SER A 36 ARG A 39 0 SHEET 2 B 6 HIS A 24 ILE A 29 -1 N ILE A 25 O ALA A 38 SHEET 3 B 6 ILE A 4 ASP A 10 -1 N ALA A 6 O ASP A 28 SHEET 4 B 6 GLY A 209 ASN A 216 -1 O ILE A 210 N LEU A 9 SHEET 5 B 6 TRP A 88 THR A 96 -1 N GLY A 92 O PHE A 213 SHEET 6 B 6 VAL A 179 HIS A 180 -1 O VAL A 179 N VAL A 89 SHEET 1 C 6 SER A 71 ASP A 78 0 SHEET 2 C 6 ARG A 60 TYR A 67 -1 N VAL A 65 O THR A 73 SHEET 3 C 6 VAL A 47 ASN A 55 -1 N THR A 49 O SER A 66 SHEET 4 C 6 VAL A 188 LEU A 198 -1 O ALA A 193 N ILE A 52 SHEET 5 C 6 THR A 105 LYS A 116 -1 N LYS A 116 O VAL A 188 SHEET 6 C 6 ASN A 124 PHE A 130 -1 O ASN A 124 N LEU A 115 SHEET 1 D 7 SER A 71 ASP A 78 0 SHEET 2 D 7 ARG A 60 TYR A 67 -1 N VAL A 65 O THR A 73 SHEET 3 D 7 VAL A 47 ASN A 55 -1 N THR A 49 O SER A 66 SHEET 4 D 7 VAL A 188 LEU A 198 -1 O ALA A 193 N ILE A 52 SHEET 5 D 7 THR A 105 LYS A 116 -1 N LYS A 116 O VAL A 188 SHEET 6 D 7 LEU A 154 GLN A 155 -1 O LEU A 154 N ILE A 106 SHEET 7 D 7 THR A 147 THR A 148 -1 N THR A 147 O GLN A 155 LINK OE2 GLU A 8 MN MN A 238 1555 1555 2.21 LINK OD2 ASP A 10 MN MN A 238 1555 1555 2.01 LINK OD1 ASP A 10 CA CA A 239 1555 1555 2.43 LINK OD2 ASP A 10 CA CA A 239 1555 1555 2.50 LINK O TYR A 12 CA CA A 239 1555 1555 2.36 LINK OD1 ASN A 14 CA CA A 239 1555 1555 2.39 LINK OD1 ASP A 19 MN MN A 238 1555 1555 2.27 LINK OD2 ASP A 19 CA CA A 239 1555 1555 2.31 LINK NE2 HIS A 24 MN MN A 238 1555 1555 2.12 LINK MN MN A 238 O HOH A 256 1555 1555 2.27 LINK MN MN A 238 O HOH A 276 1555 1555 2.19 LINK CA CA A 239 O HOH A 254 1555 1555 2.35 LINK CA CA A 239 O HOH A 292 1555 1555 2.31 CISPEP 1 ALA A 207 ASP A 208 0 4.93 CRYST1 64.550 86.690 90.280 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015492 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011535 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011077 0.00000