HEADER ISOMERASE 02-MAY-11 3RSM TITLE CRYSTAL STRUCTURE OF S108C MUTANT OF PMM/PGM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOMANNOMUTASE/PHOSPHOGLUCOMUTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PMM / PGM; COMPND 5 EC: 5.4.2.2, 5.4.2.8; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: ALGC, PA5322; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET3A KEYWDS ISOMERASE, PHOSPHOHEXOMUTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.AKELLA,A.ANBANANDAM,A.KELM,Y.WEI,R.MEHRA-CHAUDHARY,L.BEAMER,S.VAN AUTHOR 2 DOREN REVDAT 2 13-SEP-23 3RSM 1 REMARK SEQADV LINK REVDAT 1 29-FEB-12 3RSM 0 JRNL AUTH A.V.SARMA,A.ANBANANDAM,A.KELM,R.MEHRA-CHAUDHARY,Y.WEI,P.QIN, JRNL AUTH 2 Y.LEE,M.V.BERJANSKII,J.A.MICK,L.J.BEAMER,S.R.VAN DOREN JRNL TITL SOLUTION NMR OF A 463-RESIDUE PHOSPHOHEXOMUTASE: DOMAIN 4 JRNL TITL 2 MOBILITY, SUBSTATES, AND PHOSPHORYL TRANSFER DEFECT. JRNL REF BIOCHEMISTRY V. 51 807 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22242625 JRNL DOI 10.1021/BI201609N REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 27273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1456 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1974 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3246 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.55000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : 1.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.227 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.191 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.156 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.547 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3352 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4565 ; 1.387 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 444 ; 5.671 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;37.309 ;24.130 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 537 ;15.719 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;15.928 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 527 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2552 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2178 ; 0.540 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3489 ; 0.991 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1174 ; 1.801 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1071 ; 2.772 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 218 REMARK 3 ORIGIN FOR THE GROUP (A): 56.2488 47.5301 -0.0597 REMARK 3 T TENSOR REMARK 3 T11: 0.1053 T22: 0.3381 REMARK 3 T33: 0.3116 T12: 0.0122 REMARK 3 T13: 0.0525 T23: -0.1937 REMARK 3 L TENSOR REMARK 3 L11: 3.2333 L22: 6.3977 REMARK 3 L33: 4.5014 L12: 0.5723 REMARK 3 L13: 1.7155 L23: 4.8154 REMARK 3 S TENSOR REMARK 3 S11: 0.0520 S12: 0.2437 S13: -0.7230 REMARK 3 S21: 0.4519 S22: 0.5958 S23: -0.3141 REMARK 3 S31: 0.3644 S32: 0.7372 S33: -0.6478 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 219 A 367 REMARK 3 ORIGIN FOR THE GROUP (A): 49.2138 65.3605 11.3199 REMARK 3 T TENSOR REMARK 3 T11: 0.0833 T22: 0.0945 REMARK 3 T33: 0.0554 T12: -0.0292 REMARK 3 T13: 0.0291 T23: -0.0475 REMARK 3 L TENSOR REMARK 3 L11: 3.6970 L22: 2.4677 REMARK 3 L33: 1.9022 L12: 0.0041 REMARK 3 L13: 0.0088 L23: 1.1122 REMARK 3 S TENSOR REMARK 3 S11: -0.0874 S12: -0.1077 S13: -0.0279 REMARK 3 S21: 0.0052 S22: 0.2463 S23: -0.0751 REMARK 3 S31: -0.0681 S32: 0.2604 S33: -0.1589 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 368 A 463 REMARK 3 ORIGIN FOR THE GROUP (A): 38.5806 53.8002 30.5728 REMARK 3 T TENSOR REMARK 3 T11: 0.2747 T22: 0.1354 REMARK 3 T33: 0.1496 T12: -0.0036 REMARK 3 T13: 0.0135 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.6126 L22: 13.6266 REMARK 3 L33: 4.2276 L12: 3.9462 REMARK 3 L13: -0.5396 L23: -5.2371 REMARK 3 S TENSOR REMARK 3 S11: 0.2777 S12: -0.2771 S13: 0.1137 REMARK 3 S21: 0.7767 S22: -0.4399 S23: 0.0153 REMARK 3 S31: -0.5989 S32: 0.2457 S33: 0.1622 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3RSM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065326. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC CONFOCAL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29767 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.843 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.72 REMARK 200 R MERGE FOR SHELL (I) : 0.51330 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: REFINEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1K35 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 NA,K TARTRATE, 100 MM NA HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.51700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.49850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.40300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.49850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.51700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.40300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 VAL A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 THR A 8 REMARK 465 LEU A 9 REMARK 465 PRO A 10 REMARK 465 ALA A 11 REMARK 465 TYR A 17 REMARK 465 ASP A 18 REMARK 465 ILE A 19 REMARK 465 ARG A 20 REMARK 465 GLY A 21 REMARK 465 VAL A 22 REMARK 465 VAL A 23 REMARK 465 GLY A 24 REMARK 465 ASP A 25 REMARK 465 THR A 26 REMARK 465 HIS A 109 REMARK 465 ASN A 110 REMARK 465 PRO A 111 REMARK 465 PRO A 112 REMARK 465 ASP A 113 REMARK 465 TYR A 114 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 15 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 27 CG CD1 CD2 REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 ARG A 58 CG CD NE CZ NH1 NH2 REMARK 470 SER A 60 OG REMARK 470 CYS A 108 SG REMARK 470 ASN A 115 CG OD1 ND2 REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 ARG A 135 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 136 CG CD OE1 OE2 REMARK 470 ILE A 138 CG1 CG2 CD1 REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 SER A 145 OG REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 GLU A 205 CG CD OE1 OE2 REMARK 470 HIS A 214 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 LYS A 316 CG CD CE NZ REMARK 470 GLN A 357 CG CD OE1 NE2 REMARK 470 ILE A 371 CG1 CG2 CD1 REMARK 470 GLN A 397 CG CD OE1 NE2 REMARK 470 ASN A 402 CG OD1 ND2 REMARK 470 LYS A 415 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 325 O HOH A 553 1.93 REMARK 500 O HOH A 475 O HOH A 577 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 293 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 15 -167.61 -78.17 REMARK 500 THR A 28 -158.23 -139.69 REMARK 500 ASP A 56 -155.68 -94.16 REMARK 500 ASP A 74 2.49 -67.46 REMARK 500 ASN A 128 -121.26 30.83 REMARK 500 GLU A 129 12.19 -66.41 REMARK 500 ALA A 168 78.03 -119.22 REMARK 500 ALA A 170 -78.14 -101.50 REMARK 500 ILE A 187 -25.08 -150.23 REMARK 500 PHE A 210 73.00 33.06 REMARK 500 TRP A 336 -157.18 -144.95 REMARK 500 VAL A 380 -139.46 -111.96 REMARK 500 GLU A 400 40.25 -80.97 REMARK 500 ASP A 407 89.42 -153.81 REMARK 500 PRO A 462 41.87 -83.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 242 OD2 REMARK 620 2 ASP A 244 OD2 95.8 REMARK 620 3 ASP A 246 OD1 102.3 88.5 REMARK 620 4 PO4 A 464 O2 139.1 113.1 106.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 464 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K35 RELATED DB: PDB REMARK 900 RELATED ID: 1K2Y RELATED DB: PDB REMARK 900 RELATED ID: 1P5D RELATED DB: PDB REMARK 900 RELATED ID: 1P5G RELATED DB: PDB DBREF 3RSM A 1 463 UNP P26276 ALGC_PSEAE 1 463 SEQADV 3RSM VAL A 4 UNP P26276 ALA 4 CONFLICT SEQADV 3RSM CYS A 108 UNP P26276 SER 108 ENGINEERED MUTATION SEQRES 1 A 463 MET SER THR VAL LYS ALA PRO THR LEU PRO ALA SER ILE SEQRES 2 A 463 PHE ARG ALA TYR ASP ILE ARG GLY VAL VAL GLY ASP THR SEQRES 3 A 463 LEU THR ALA GLU THR ALA TYR TRP ILE GLY ARG ALA ILE SEQRES 4 A 463 GLY SER GLU SER LEU ALA ARG GLY GLU PRO CYS VAL ALA SEQRES 5 A 463 VAL GLY ARG ASP GLY ARG LEU SER GLY PRO GLU LEU VAL SEQRES 6 A 463 LYS GLN LEU ILE GLN GLY LEU VAL ASP CYS GLY CYS GLN SEQRES 7 A 463 VAL SER ASP VAL GLY MET VAL PRO THR PRO VAL LEU TYR SEQRES 8 A 463 TYR ALA ALA ASN VAL LEU GLU GLY LYS SER GLY VAL MET SEQRES 9 A 463 LEU THR GLY CYS HIS ASN PRO PRO ASP TYR ASN GLY PHE SEQRES 10 A 463 LYS ILE VAL VAL ALA GLY GLU THR LEU ALA ASN GLU GLN SEQRES 11 A 463 ILE GLN ALA LEU ARG GLU ARG ILE GLU LYS ASN ASP LEU SEQRES 12 A 463 ALA SER GLY VAL GLY SER VAL GLU GLN VAL ASP ILE LEU SEQRES 13 A 463 PRO ARG TYR PHE LYS GLN ILE ARG ASP ASP ILE ALA MET SEQRES 14 A 463 ALA LYS PRO MET LYS VAL VAL VAL ASP CYS GLY ASN GLY SEQRES 15 A 463 VAL ALA GLY VAL ILE ALA PRO GLN LEU ILE GLU ALA LEU SEQRES 16 A 463 GLY CYS SER VAL ILE PRO LEU TYR CYS GLU VAL ASP GLY SEQRES 17 A 463 ASN PHE PRO ASN HIS HIS PRO ASP PRO GLY LYS PRO GLU SEQRES 18 A 463 ASN LEU LYS ASP LEU ILE ALA LYS VAL LYS ALA GLU ASN SEQRES 19 A 463 ALA ASP LEU GLY LEU ALA PHE ASP GLY ASP GLY ASP ARG SEQRES 20 A 463 VAL GLY VAL VAL THR ASN THR GLY THR ILE ILE TYR PRO SEQRES 21 A 463 ASP ARG LEU LEU MET LEU PHE ALA LYS ASP VAL VAL SER SEQRES 22 A 463 ARG ASN PRO GLY ALA ASP ILE ILE PHE ASP VAL LYS CYS SEQRES 23 A 463 THR ARG ARG LEU ILE ALA LEU ILE SER GLY TYR GLY GLY SEQRES 24 A 463 ARG PRO VAL MET TRP LYS THR GLY HIS SER LEU ILE LYS SEQRES 25 A 463 LYS LYS MET LYS GLU THR GLY ALA LEU LEU ALA GLY GLU SEQRES 26 A 463 MET SER GLY HIS VAL PHE PHE LYS GLU ARG TRP PHE GLY SEQRES 27 A 463 PHE ASP ASP GLY ILE TYR SER ALA ALA ARG LEU LEU GLU SEQRES 28 A 463 ILE LEU SER GLN ASP GLN ARG ASP SER GLU HIS VAL PHE SEQRES 29 A 463 SER ALA PHE PRO SER ASP ILE SER THR PRO GLU ILE ASN SEQRES 30 A 463 ILE THR VAL THR GLU ASP SER LYS PHE ALA ILE ILE GLU SEQRES 31 A 463 ALA LEU GLN ARG ASP ALA GLN TRP GLY GLU GLY ASN ILE SEQRES 32 A 463 THR THR LEU ASP GLY VAL ARG VAL ASP TYR PRO LYS GLY SEQRES 33 A 463 TRP GLY LEU VAL ARG ALA SER ASN THR THR PRO VAL LEU SEQRES 34 A 463 VAL LEU ARG PHE GLU ALA ASP THR GLU GLU GLU LEU GLU SEQRES 35 A 463 ARG ILE LYS THR VAL PHE ARG ASN GLN LEU LYS ALA VAL SEQRES 36 A 463 ASP SER SER LEU PRO VAL PRO PHE HET ZN A 500 1 HET PO4 A 464 5 HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION FORMUL 2 ZN ZN 2+ FORMUL 3 PO4 O4 P 3- FORMUL 4 HOH *116(H2 O) HELIX 1 1 THR A 28 ARG A 46 1 19 HELIX 2 2 SER A 60 ASP A 74 1 15 HELIX 3 3 PRO A 86 LEU A 97 1 12 HELIX 4 4 ALA A 127 ASN A 141 1 15 HELIX 5 5 ILE A 155 ILE A 167 1 13 HELIX 6 6 GLY A 182 VAL A 186 5 5 HELIX 7 7 ILE A 187 GLY A 196 1 10 HELIX 8 8 LYS A 219 ASN A 222 5 4 HELIX 9 9 LEU A 223 GLU A 233 1 11 HELIX 10 10 TYR A 259 ASN A 275 1 17 HELIX 11 11 THR A 287 TYR A 297 1 11 HELIX 12 12 GLY A 307 GLY A 319 1 13 HELIX 13 13 ASP A 341 GLN A 355 1 15 HELIX 14 14 ASP A 359 ALA A 366 1 8 HELIX 15 15 SER A 384 ALA A 396 1 13 HELIX 16 16 THR A 437 ASP A 456 1 20 SHEET 1 A 6 GLU A 124 THR A 125 0 SHEET 2 A 6 PHE A 117 VAL A 121 -1 N VAL A 121 O GLU A 124 SHEET 3 A 6 SER A 101 LEU A 105 -1 N GLY A 102 O VAL A 120 SHEET 4 A 6 CYS A 50 ARG A 55 1 N GLY A 54 O LEU A 105 SHEET 5 A 6 GLN A 78 MET A 84 1 O SER A 80 N VAL A 51 SHEET 6 A 6 SER A 149 GLN A 152 1 O SER A 149 N VAL A 79 SHEET 1 B 5 CYS A 197 LEU A 202 0 SHEET 2 B 5 MET A 173 ASP A 178 1 N VAL A 175 O SER A 198 SHEET 3 B 5 LEU A 237 PHE A 241 1 O LEU A 239 N ASP A 178 SHEET 4 B 5 VAL A 248 THR A 252 -1 O GLY A 249 N ALA A 240 SHEET 5 B 5 ILE A 257 ILE A 258 -1 O ILE A 258 N VAL A 250 SHEET 1 C 4 ARG A 300 TRP A 304 0 SHEET 2 C 4 ASP A 279 ASP A 283 1 N PHE A 282 O TRP A 304 SHEET 3 C 4 LEU A 322 GLY A 324 1 O LEU A 322 N ILE A 281 SHEET 4 C 4 VAL A 330 PHE A 332 -1 O PHE A 331 N ALA A 323 SHEET 1 D 3 ILE A 371 SER A 372 0 SHEET 2 D 3 VAL A 428 ALA A 435 -1 O ALA A 435 N ILE A 371 SHEET 3 D 3 ILE A 376 THR A 379 -1 N ILE A 376 O LEU A 431 SHEET 1 E 5 ILE A 371 SER A 372 0 SHEET 2 E 5 VAL A 428 ALA A 435 -1 O ALA A 435 N ILE A 371 SHEET 3 E 5 GLY A 416 ALA A 422 -1 N ARG A 421 O VAL A 430 SHEET 4 E 5 VAL A 409 ASP A 412 -1 N VAL A 409 O VAL A 420 SHEET 5 E 5 ASN A 402 THR A 404 -1 N THR A 404 O ARG A 410 LINK OD2 ASP A 242 ZN ZN A 500 1555 1555 1.93 LINK OD2 ASP A 244 ZN ZN A 500 1555 1555 2.12 LINK OD1 ASP A 246 ZN ZN A 500 1555 1555 2.01 LINK O2 PO4 A 464 ZN ZN A 500 1555 1555 1.94 SITE 1 AC1 4 ASP A 242 ASP A 244 ASP A 246 PO4 A 464 SITE 1 AC2 8 CYS A 108 LYS A 118 ASP A 242 ASP A 244 SITE 2 AC2 8 ASP A 246 ARG A 247 HIS A 329 ZN A 500 CRYST1 71.034 72.806 92.997 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014078 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013735 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010753 0.00000