HEADER CHAPERONE 03-MAY-11 3RTK TITLE CRYSTAL STRUCTURE OF CPN60.2 FROM MYCOBACTERIUM TUBERCULOSIS AT 2.8A COMPND MOL_ID: 1; COMPND 2 MOLECULE: 60 KDA CHAPERONIN 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CPN60.2, 65 KDA ANTIGEN, ANTIGEN A, CELL WALL PROTEIN A, COMPND 5 GROEL PROTEIN 2, HEAT SHOCK PROTEIN 65; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: GROL2, GROEL-2, GROEL2, HSP65, RV0440, MT0456, MTV037.04; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEAT SHOCK PROTEIN, CHAPERONIN, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR A.SHAHAR,M.MELAMED-FRANK,Y.KASHI,N.ADIR REVDAT 3 13-SEP-23 3RTK 1 SEQADV REVDAT 2 19-JUN-13 3RTK 1 JRNL REVDAT 1 10-AUG-11 3RTK 0 JRNL AUTH A.SHAHAR,M.MELAMED-FRANK,Y.KASHI,L.SHIMON,N.ADIR JRNL TITL THE DIMERIC STRUCTURE OF THE CPN60.2 CHAPERONIN OF JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS AT 2.8 A REVEALS POSSIBLE MODES JRNL TITL 3 OF FUNCTION. JRNL REF J.MOL.BIOL. V. 412 192 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21802426 JRNL DOI 10.1016/J.JMB.2011.07.026 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.500 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 23832 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1105 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6620 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM SIGMAA (A) : 0.53 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.530 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RTK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065359. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23832 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 10.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1SJP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.5, 10% 2-PROPANOL, REMARK 280 20% PEG4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K, PH REMARK 280 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.99000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 THR A 4 REMARK 465 ILE A 5 REMARK 465 ALA A 6 REMARK 465 TYR A 7 REMARK 465 ASP A 8 REMARK 465 GLU A 9 REMARK 465 GLU A 10 REMARK 465 ALA A 11 REMARK 465 ARG A 12 REMARK 465 ARG A 13 REMARK 465 GLY A 14 REMARK 465 LEU A 15 REMARK 465 GLU A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 LEU A 19 REMARK 465 ASN A 20 REMARK 465 ALA A 21 REMARK 465 LEU A 22 REMARK 465 ALA A 23 REMARK 465 ASP A 24 REMARK 465 ALA A 25 REMARK 465 VAL A 26 REMARK 465 LYS A 27 REMARK 465 VAL A 28 REMARK 465 THR A 29 REMARK 465 LEU A 30 REMARK 465 GLY A 31 REMARK 465 PRO A 32 REMARK 465 LYS A 33 REMARK 465 GLY A 34 REMARK 465 ARG A 35 REMARK 465 ASN A 36 REMARK 465 VAL A 37 REMARK 465 VAL A 38 REMARK 465 LEU A 39 REMARK 465 GLU A 40 REMARK 465 LYS A 41 REMARK 465 LYS A 42 REMARK 465 TRP A 43 REMARK 465 GLY A 44 REMARK 465 ALA A 45 REMARK 465 PRO A 46 REMARK 465 THR A 47 REMARK 465 ILE A 48 REMARK 465 THR A 49 REMARK 465 ASN A 50 REMARK 465 ASP A 51 REMARK 465 GLY A 52 REMARK 465 VAL A 53 REMARK 465 SER A 54 REMARK 465 ILE A 55 REMARK 465 ALA A 56 REMARK 465 LYS A 57 REMARK 465 GLU A 58 REMARK 465 ILE A 59 REMARK 465 GLU A 60 REMARK 465 ASP A 82 REMARK 465 VAL A 83 REMARK 465 ALA A 84 REMARK 465 GLY A 85 REMARK 465 ASP A 86 REMARK 465 GLY A 87 REMARK 465 THR A 88 REMARK 465 ALA A 516 REMARK 465 VAL A 517 REMARK 465 VAL A 518 REMARK 465 ALA A 519 REMARK 465 ASP A 520 REMARK 465 LYS A 521 REMARK 465 PRO A 522 REMARK 465 GLU A 523 REMARK 465 LYS A 524 REMARK 465 GLU A 525 REMARK 465 LYS A 526 REMARK 465 ALA A 527 REMARK 465 SER A 528 REMARK 465 VAL A 529 REMARK 465 PRO A 530 REMARK 465 GLY A 531 REMARK 465 GLY A 532 REMARK 465 GLY A 533 REMARK 465 ASP A 534 REMARK 465 MET A 535 REMARK 465 GLY A 536 REMARK 465 GLY A 537 REMARK 465 MET A 538 REMARK 465 ASP A 539 REMARK 465 PHE A 540 REMARK 465 HIS A 541 REMARK 465 HIS A 542 REMARK 465 HIS A 543 REMARK 465 HIS A 544 REMARK 465 HIS A 545 REMARK 465 HIS A 546 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LYS B 3 REMARK 465 THR B 4 REMARK 465 ILE B 5 REMARK 465 ALA B 6 REMARK 465 TYR B 7 REMARK 465 ASP B 8 REMARK 465 GLU B 9 REMARK 465 GLU B 10 REMARK 465 ALA B 11 REMARK 465 ARG B 12 REMARK 465 ARG B 13 REMARK 465 GLY B 14 REMARK 465 LEU B 15 REMARK 465 GLU B 16 REMARK 465 ARG B 17 REMARK 465 GLY B 18 REMARK 465 LEU B 19 REMARK 465 ASN B 20 REMARK 465 ALA B 21 REMARK 465 LEU B 22 REMARK 465 ALA B 23 REMARK 465 ASP B 24 REMARK 465 ALA B 25 REMARK 465 VAL B 26 REMARK 465 LYS B 27 REMARK 465 VAL B 28 REMARK 465 THR B 29 REMARK 465 LEU B 30 REMARK 465 GLY B 31 REMARK 465 PRO B 32 REMARK 465 LYS B 33 REMARK 465 GLY B 34 REMARK 465 ARG B 35 REMARK 465 ASN B 36 REMARK 465 VAL B 37 REMARK 465 VAL B 38 REMARK 465 LEU B 39 REMARK 465 GLU B 40 REMARK 465 LYS B 41 REMARK 465 LYS B 42 REMARK 465 TRP B 43 REMARK 465 GLY B 44 REMARK 465 ALA B 45 REMARK 465 PRO B 46 REMARK 465 THR B 47 REMARK 465 ILE B 48 REMARK 465 THR B 49 REMARK 465 ASN B 50 REMARK 465 ASP B 51 REMARK 465 GLY B 52 REMARK 465 VAL B 53 REMARK 465 SER B 54 REMARK 465 ILE B 55 REMARK 465 ALA B 56 REMARK 465 LYS B 57 REMARK 465 GLU B 58 REMARK 465 ILE B 59 REMARK 465 GLU B 60 REMARK 465 ASP B 81 REMARK 465 ASP B 82 REMARK 465 VAL B 83 REMARK 465 ALA B 84 REMARK 465 GLY B 85 REMARK 465 ASP B 86 REMARK 465 GLY B 87 REMARK 465 GLU B 515 REMARK 465 ALA B 516 REMARK 465 VAL B 517 REMARK 465 VAL B 518 REMARK 465 ALA B 519 REMARK 465 ASP B 520 REMARK 465 LYS B 521 REMARK 465 PRO B 522 REMARK 465 GLU B 523 REMARK 465 LYS B 524 REMARK 465 GLU B 525 REMARK 465 LYS B 526 REMARK 465 ALA B 527 REMARK 465 SER B 528 REMARK 465 VAL B 529 REMARK 465 PRO B 530 REMARK 465 GLY B 531 REMARK 465 GLY B 532 REMARK 465 GLY B 533 REMARK 465 ASP B 534 REMARK 465 MET B 535 REMARK 465 GLY B 536 REMARK 465 GLY B 537 REMARK 465 MET B 538 REMARK 465 ASP B 539 REMARK 465 PHE B 540 REMARK 465 HIS B 541 REMARK 465 HIS B 542 REMARK 465 HIS B 543 REMARK 465 HIS B 544 REMARK 465 HIS B 545 REMARK 465 HIS B 546 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 358 O GLY B 333 1655 1.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 138 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 ASP A 153 CB - CA - C ANGL. DEV. = 13.8 DEGREES REMARK 500 SER A 226 CB - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 ALA B 382 CB - CA - C ANGL. DEV. = -9.1 DEGREES REMARK 500 GLU B 406 CB - CA - C ANGL. DEV. = -15.3 DEGREES REMARK 500 VAL B 490 N - CA - C ANGL. DEV. = -18.7 DEGREES REMARK 500 ALA B 491 N - CA - CB ANGL. DEV. = 11.4 DEGREES REMARK 500 ASP B 492 CB - CA - C ANGL. DEV. = 13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 78 26.23 -73.43 REMARK 500 LYS A 79 -61.30 -95.12 REMARK 500 GLU A 138 -60.30 -133.70 REMARK 500 LEU A 183 120.47 -37.63 REMARK 500 GLN A 209 41.17 36.40 REMARK 500 SER A 226 -61.80 -136.75 REMARK 500 VAL A 303 -71.05 -125.74 REMARK 500 ALA A 382 77.34 132.71 REMARK 500 THR A 383 93.64 -172.62 REMARK 500 GLU A 384 -159.48 166.27 REMARK 500 GLU A 407 -13.21 -146.16 REMARK 500 PRO A 422 -4.53 -50.05 REMARK 500 LEU A 429 90.76 -69.93 REMARK 500 SER A 455 4.57 -63.85 REMARK 500 ALA A 488 -2.88 -50.86 REMARK 500 THR B 204 -24.96 -146.29 REMARK 500 SER B 222 44.28 -91.81 REMARK 500 SER B 226 -25.49 -146.20 REMARK 500 GLU B 255 -12.44 106.38 REMARK 500 SER B 271 -158.36 -179.39 REMARK 500 GLU B 332 178.78 123.60 REMARK 500 ALA B 334 79.54 99.41 REMARK 500 GLU B 426 6.64 -65.71 REMARK 500 ARG B 467 -8.03 -54.75 REMARK 500 ALA B 471 96.43 -62.94 REMARK 500 REMARK 500 REMARK: NULL DBREF 3RTK A 1 540 UNP P0A520 CH602_MYCTU 1 540 DBREF 3RTK B 1 540 UNP P0A520 CH602_MYCTU 1 540 SEQADV 3RTK HIS A 541 UNP P0A520 EXPRESSION TAG SEQADV 3RTK HIS A 542 UNP P0A520 EXPRESSION TAG SEQADV 3RTK HIS A 543 UNP P0A520 EXPRESSION TAG SEQADV 3RTK HIS A 544 UNP P0A520 EXPRESSION TAG SEQADV 3RTK HIS A 545 UNP P0A520 EXPRESSION TAG SEQADV 3RTK HIS A 546 UNP P0A520 EXPRESSION TAG SEQADV 3RTK HIS B 541 UNP P0A520 EXPRESSION TAG SEQADV 3RTK HIS B 542 UNP P0A520 EXPRESSION TAG SEQADV 3RTK HIS B 543 UNP P0A520 EXPRESSION TAG SEQADV 3RTK HIS B 544 UNP P0A520 EXPRESSION TAG SEQADV 3RTK HIS B 545 UNP P0A520 EXPRESSION TAG SEQADV 3RTK HIS B 546 UNP P0A520 EXPRESSION TAG SEQRES 1 A 546 MET ALA LYS THR ILE ALA TYR ASP GLU GLU ALA ARG ARG SEQRES 2 A 546 GLY LEU GLU ARG GLY LEU ASN ALA LEU ALA ASP ALA VAL SEQRES 3 A 546 LYS VAL THR LEU GLY PRO LYS GLY ARG ASN VAL VAL LEU SEQRES 4 A 546 GLU LYS LYS TRP GLY ALA PRO THR ILE THR ASN ASP GLY SEQRES 5 A 546 VAL SER ILE ALA LYS GLU ILE GLU LEU GLU ASP PRO TYR SEQRES 6 A 546 GLU LYS ILE GLY ALA GLU LEU VAL LYS GLU VAL ALA LYS SEQRES 7 A 546 LYS THR ASP ASP VAL ALA GLY ASP GLY THR THR THR ALA SEQRES 8 A 546 THR VAL LEU ALA GLN ALA LEU VAL ARG GLU GLY LEU ARG SEQRES 9 A 546 ASN VAL ALA ALA GLY ALA ASN PRO LEU GLY LEU LYS ARG SEQRES 10 A 546 GLY ILE GLU LYS ALA VAL GLU LYS VAL THR GLU THR LEU SEQRES 11 A 546 LEU LYS GLY ALA LYS GLU VAL GLU THR LYS GLU GLN ILE SEQRES 12 A 546 ALA ALA THR ALA ALA ILE SER ALA GLY ASP GLN SER ILE SEQRES 13 A 546 GLY ASP LEU ILE ALA GLU ALA MET ASP LYS VAL GLY ASN SEQRES 14 A 546 GLU GLY VAL ILE THR VAL GLU GLU SER ASN THR PHE GLY SEQRES 15 A 546 LEU GLN LEU GLU LEU THR GLU GLY MET ARG PHE ASP LYS SEQRES 16 A 546 GLY TYR ILE SER GLY TYR PHE VAL THR ASP PRO GLU ARG SEQRES 17 A 546 GLN GLU ALA VAL LEU GLU ASP PRO TYR ILE LEU LEU VAL SEQRES 18 A 546 SER SER LYS VAL SER THR VAL LYS ASP LEU LEU PRO LEU SEQRES 19 A 546 LEU GLU LYS VAL ILE GLY ALA GLY LYS PRO LEU LEU ILE SEQRES 20 A 546 ILE ALA GLU ASP VAL GLU GLY GLU ALA LEU SER THR LEU SEQRES 21 A 546 VAL VAL ASN LYS ILE ARG GLY THR PHE LYS SER VAL ALA SEQRES 22 A 546 VAL LYS ALA PRO GLY PHE GLY ASP ARG ARG LYS ALA MET SEQRES 23 A 546 LEU GLN ASP MET ALA ILE LEU THR GLY GLY GLN VAL ILE SEQRES 24 A 546 SER GLU GLU VAL GLY LEU THR LEU GLU ASN ALA ASP LEU SEQRES 25 A 546 SER LEU LEU GLY LYS ALA ARG LYS VAL VAL VAL THR LYS SEQRES 26 A 546 ASP GLU THR THR ILE VAL GLU GLY ALA GLY ASP THR ASP SEQRES 27 A 546 ALA ILE ALA GLY ARG VAL ALA GLN ILE ARG GLN GLU ILE SEQRES 28 A 546 GLU ASN SER ASP SER ASP TYR ASP ARG GLU LYS LEU GLN SEQRES 29 A 546 GLU ARG LEU ALA LYS LEU ALA GLY GLY VAL ALA VAL ILE SEQRES 30 A 546 LYS ALA GLY ALA ALA THR GLU VAL GLU LEU LYS GLU ARG SEQRES 31 A 546 LYS HIS ARG ILE GLU ASP ALA VAL ARG ASN ALA LYS ALA SEQRES 32 A 546 ALA VAL GLU GLU GLY ILE VAL ALA GLY GLY GLY VAL THR SEQRES 33 A 546 LEU LEU GLN ALA ALA PRO THR LEU ASP GLU LEU LYS LEU SEQRES 34 A 546 GLU GLY ASP GLU ALA THR GLY ALA ASN ILE VAL LYS VAL SEQRES 35 A 546 ALA LEU GLU ALA PRO LEU LYS GLN ILE ALA PHE ASN SER SEQRES 36 A 546 GLY LEU GLU PRO GLY VAL VAL ALA GLU LYS VAL ARG ASN SEQRES 37 A 546 LEU PRO ALA GLY HIS GLY LEU ASN ALA GLN THR GLY VAL SEQRES 38 A 546 TYR GLU ASP LEU LEU ALA ALA GLY VAL ALA ASP PRO VAL SEQRES 39 A 546 LYS VAL THR ARG SER ALA LEU GLN ASN ALA ALA SER ILE SEQRES 40 A 546 ALA GLY LEU PHE LEU THR THR GLU ALA VAL VAL ALA ASP SEQRES 41 A 546 LYS PRO GLU LYS GLU LYS ALA SER VAL PRO GLY GLY GLY SEQRES 42 A 546 ASP MET GLY GLY MET ASP PHE HIS HIS HIS HIS HIS HIS SEQRES 1 B 546 MET ALA LYS THR ILE ALA TYR ASP GLU GLU ALA ARG ARG SEQRES 2 B 546 GLY LEU GLU ARG GLY LEU ASN ALA LEU ALA ASP ALA VAL SEQRES 3 B 546 LYS VAL THR LEU GLY PRO LYS GLY ARG ASN VAL VAL LEU SEQRES 4 B 546 GLU LYS LYS TRP GLY ALA PRO THR ILE THR ASN ASP GLY SEQRES 5 B 546 VAL SER ILE ALA LYS GLU ILE GLU LEU GLU ASP PRO TYR SEQRES 6 B 546 GLU LYS ILE GLY ALA GLU LEU VAL LYS GLU VAL ALA LYS SEQRES 7 B 546 LYS THR ASP ASP VAL ALA GLY ASP GLY THR THR THR ALA SEQRES 8 B 546 THR VAL LEU ALA GLN ALA LEU VAL ARG GLU GLY LEU ARG SEQRES 9 B 546 ASN VAL ALA ALA GLY ALA ASN PRO LEU GLY LEU LYS ARG SEQRES 10 B 546 GLY ILE GLU LYS ALA VAL GLU LYS VAL THR GLU THR LEU SEQRES 11 B 546 LEU LYS GLY ALA LYS GLU VAL GLU THR LYS GLU GLN ILE SEQRES 12 B 546 ALA ALA THR ALA ALA ILE SER ALA GLY ASP GLN SER ILE SEQRES 13 B 546 GLY ASP LEU ILE ALA GLU ALA MET ASP LYS VAL GLY ASN SEQRES 14 B 546 GLU GLY VAL ILE THR VAL GLU GLU SER ASN THR PHE GLY SEQRES 15 B 546 LEU GLN LEU GLU LEU THR GLU GLY MET ARG PHE ASP LYS SEQRES 16 B 546 GLY TYR ILE SER GLY TYR PHE VAL THR ASP PRO GLU ARG SEQRES 17 B 546 GLN GLU ALA VAL LEU GLU ASP PRO TYR ILE LEU LEU VAL SEQRES 18 B 546 SER SER LYS VAL SER THR VAL LYS ASP LEU LEU PRO LEU SEQRES 19 B 546 LEU GLU LYS VAL ILE GLY ALA GLY LYS PRO LEU LEU ILE SEQRES 20 B 546 ILE ALA GLU ASP VAL GLU GLY GLU ALA LEU SER THR LEU SEQRES 21 B 546 VAL VAL ASN LYS ILE ARG GLY THR PHE LYS SER VAL ALA SEQRES 22 B 546 VAL LYS ALA PRO GLY PHE GLY ASP ARG ARG LYS ALA MET SEQRES 23 B 546 LEU GLN ASP MET ALA ILE LEU THR GLY GLY GLN VAL ILE SEQRES 24 B 546 SER GLU GLU VAL GLY LEU THR LEU GLU ASN ALA ASP LEU SEQRES 25 B 546 SER LEU LEU GLY LYS ALA ARG LYS VAL VAL VAL THR LYS SEQRES 26 B 546 ASP GLU THR THR ILE VAL GLU GLY ALA GLY ASP THR ASP SEQRES 27 B 546 ALA ILE ALA GLY ARG VAL ALA GLN ILE ARG GLN GLU ILE SEQRES 28 B 546 GLU ASN SER ASP SER ASP TYR ASP ARG GLU LYS LEU GLN SEQRES 29 B 546 GLU ARG LEU ALA LYS LEU ALA GLY GLY VAL ALA VAL ILE SEQRES 30 B 546 LYS ALA GLY ALA ALA THR GLU VAL GLU LEU LYS GLU ARG SEQRES 31 B 546 LYS HIS ARG ILE GLU ASP ALA VAL ARG ASN ALA LYS ALA SEQRES 32 B 546 ALA VAL GLU GLU GLY ILE VAL ALA GLY GLY GLY VAL THR SEQRES 33 B 546 LEU LEU GLN ALA ALA PRO THR LEU ASP GLU LEU LYS LEU SEQRES 34 B 546 GLU GLY ASP GLU ALA THR GLY ALA ASN ILE VAL LYS VAL SEQRES 35 B 546 ALA LEU GLU ALA PRO LEU LYS GLN ILE ALA PHE ASN SER SEQRES 36 B 546 GLY LEU GLU PRO GLY VAL VAL ALA GLU LYS VAL ARG ASN SEQRES 37 B 546 LEU PRO ALA GLY HIS GLY LEU ASN ALA GLN THR GLY VAL SEQRES 38 B 546 TYR GLU ASP LEU LEU ALA ALA GLY VAL ALA ASP PRO VAL SEQRES 39 B 546 LYS VAL THR ARG SER ALA LEU GLN ASN ALA ALA SER ILE SEQRES 40 B 546 ALA GLY LEU PHE LEU THR THR GLU ALA VAL VAL ALA ASP SEQRES 41 B 546 LYS PRO GLU LYS GLU LYS ALA SER VAL PRO GLY GLY GLY SEQRES 42 B 546 ASP MET GLY GLY MET ASP PHE HIS HIS HIS HIS HIS HIS HET MG A 547 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG MG 2+ FORMUL 4 HOH *8(H2 O) HELIX 1 1 ASP A 63 LYS A 78 1 16 HELIX 2 2 THR A 89 ALA A 107 1 19 HELIX 3 3 ASN A 111 GLY A 133 1 23 HELIX 4 4 THR A 139 GLY A 152 1 14 HELIX 5 5 ASP A 153 VAL A 167 1 15 HELIX 6 6 SER A 199 VAL A 203 5 5 HELIX 7 7 LEU A 231 GLY A 240 1 10 HELIX 8 8 GLU A 253 GLY A 267 1 15 HELIX 9 9 PHE A 279 GLY A 295 1 17 HELIX 10 10 ASP A 336 ASN A 353 1 18 HELIX 11 11 SER A 356 GLY A 373 1 18 HELIX 12 12 VAL A 385 GLY A 408 1 24 HELIX 13 13 GLY A 414 GLN A 419 1 6 HELIX 14 14 ALA A 420 LEU A 424 5 5 HELIX 15 15 ASP A 432 LEU A 444 1 13 HELIX 16 16 GLU A 445 PHE A 453 1 9 HELIX 17 17 GLU A 458 LEU A 469 1 12 HELIX 18 18 VAL A 494 THR A 514 1 21 HELIX 19 19 ASP B 63 THR B 80 1 18 HELIX 20 20 THR B 89 ALA B 107 1 19 HELIX 21 21 ASN B 111 GLY B 133 1 23 HELIX 22 22 THR B 139 ALA B 151 1 13 HELIX 23 23 ASP B 153 GLY B 168 1 16 HELIX 24 24 SER B 199 VAL B 203 5 5 HELIX 25 25 ASP B 230 GLY B 240 1 11 HELIX 26 26 ALA B 256 ARG B 266 1 11 HELIX 27 27 PHE B 279 LEU B 293 1 15 HELIX 28 28 SER B 300 GLY B 304 5 5 HELIX 29 29 ASP B 311 LEU B 315 5 5 HELIX 30 30 ASP B 336 ASN B 353 1 18 HELIX 31 31 SER B 356 GLY B 373 1 18 HELIX 32 32 THR B 383 GLY B 408 1 26 HELIX 33 33 GLY B 414 GLN B 419 1 6 HELIX 34 34 ALA B 420 GLU B 426 5 7 HELIX 35 35 GLU B 430 LEU B 444 1 15 HELIX 36 36 GLU B 445 SER B 455 1 11 HELIX 37 37 GLU B 458 ARG B 467 1 10 HELIX 38 38 VAL B 494 LEU B 512 1 19 SHEET 1 A 3 VAL A 172 GLU A 176 0 SHEET 2 A 3 VAL A 374 LYS A 378 1 O ALA A 375 N THR A 174 SHEET 3 A 3 GLN A 184 THR A 188 -1 N GLU A 186 O VAL A 376 SHEET 1 B 4 GLY A 190 PHE A 193 0 SHEET 2 B 4 THR A 328 GLY A 333 -1 O ILE A 330 N MET A 191 SHEET 3 B 4 GLY A 316 VAL A 323 -1 N VAL A 322 O THR A 329 SHEET 4 B 4 ALA A 211 GLU A 214 -1 N ALA A 211 O VAL A 323 SHEET 1 C 6 GLY A 190 PHE A 193 0 SHEET 2 C 6 THR A 328 GLY A 333 -1 O ILE A 330 N MET A 191 SHEET 3 C 6 GLY A 316 VAL A 323 -1 N VAL A 322 O THR A 329 SHEET 4 C 6 TYR A 217 LEU A 220 -1 N ILE A 218 O GLY A 316 SHEET 5 C 6 LEU A 245 ALA A 249 1 O LEU A 246 N LEU A 219 SHEET 6 C 6 SER A 271 LYS A 275 1 O VAL A 274 N ILE A 247 SHEET 1 D 2 LYS A 224 VAL A 225 0 SHEET 2 D 2 ASP A 251 VAL A 252 1 O ASP A 251 N VAL A 225 SHEET 1 E 2 ILE A 409 ALA A 411 0 SHEET 2 E 2 ALA A 491 PRO A 493 -1 O ASP A 492 N VAL A 410 SHEET 1 F 2 HIS A 473 GLY A 474 0 SHEET 2 F 2 GLU A 483 ASP A 484 -1 O GLU A 483 N GLY A 474 SHEET 1 G 3 VAL B 172 GLU B 177 0 SHEET 2 G 3 VAL B 374 ALA B 379 1 O ILE B 377 N GLU B 176 SHEET 3 G 3 LEU B 183 THR B 188 -1 N GLU B 186 O VAL B 376 SHEET 1 H 4 GLY B 190 PHE B 193 0 SHEET 2 H 4 THR B 328 VAL B 331 -1 O ILE B 330 N MET B 191 SHEET 3 H 4 LYS B 320 VAL B 323 -1 N VAL B 322 O THR B 329 SHEET 4 H 4 ALA B 211 GLU B 214 -1 N ALA B 211 O VAL B 323 SHEET 1 I 4 SER B 271 LYS B 275 0 SHEET 2 I 4 LEU B 245 VAL B 252 1 N ILE B 247 O VAL B 274 SHEET 3 I 4 TYR B 217 VAL B 225 1 N LEU B 219 O LEU B 246 SHEET 4 I 4 GLY B 316 LYS B 317 -1 O GLY B 316 N ILE B 218 SHEET 1 J 2 ILE B 409 VAL B 410 0 SHEET 2 J 2 ASP B 492 PRO B 493 -1 O ASP B 492 N VAL B 410 SHEET 1 K 2 HIS B 473 GLY B 474 0 SHEET 2 K 2 GLU B 483 ASP B 484 -1 O GLU B 483 N GLY B 474 CISPEP 1 ALA A 382 THR A 383 0 4.01 CISPEP 2 GLY B 333 ALA B 334 0 0.24 CRYST1 58.190 111.980 77.280 90.00 95.50 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017185 0.000000 0.001655 0.00000 SCALE2 0.000000 0.008930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013000 0.00000