HEADER TRANSFERASE/DNA 04-MAY-11 3RTV TITLE CRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM TITLE 2 THERMUS AQUATICUS IN A CLOSED TERNARY COMPLEX WITH NATURAL TITLE 3 PRIMER/TEMPLATE DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE I, THERMOSTABLE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KLENOW FRAGMENT; COMPND 5 SYNONYM: TAQ POLYMERASE 1; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DDG))-3'); COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: DNA PRIMER; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: (5'-D(*AP*AP*AP*GP*CP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'); COMPND 15 CHAIN: C; COMPND 16 FRAGMENT: DNA TEMPLATE; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS AQUATICUS; SOURCE 3 ORGANISM_TAXID: 271; SOURCE 4 GENE: POL I, POL1, POLA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-21B; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES KEYWDS DNA POLYMERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.MARX,K.DIEDERICHS,K.BETZ REVDAT 5 13-SEP-23 3RTV 1 REMARK LINK REVDAT 4 12-SEP-12 3RTV 1 JRNL REVDAT 3 04-JUL-12 3RTV 1 JRNL REVDAT 2 06-JUN-12 3RTV 1 REVDAT 1 30-MAY-12 3RTV 0 JRNL AUTH K.BETZ,D.A.MALYSHEV,T.LAVERGNE,W.WELTE,K.DIEDERICHS, JRNL AUTH 2 T.J.DWYER,P.ORDOUKHANIAN,F.E.ROMESBERG,A.MARX JRNL TITL KLENTAQ POLYMERASE REPLICATES UNNATURAL BASE PAIRS BY JRNL TITL 2 INDUCING A WATSON-CRICK GEOMETRY. JRNL REF NAT.CHEM.BIOL. V. 8 612 2012 JRNL REFN ISSN 1552-4450 JRNL PMID 22660438 JRNL DOI 10.1038/NCHEMBIO.966 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.440 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 93428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 4715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9078 - 5.9000 1.00 2952 168 0.1476 0.1549 REMARK 3 2 5.9000 - 4.6844 1.00 2951 154 0.1421 0.1622 REMARK 3 3 4.6844 - 4.0927 1.00 2977 162 0.1235 0.1856 REMARK 3 4 4.0927 - 3.7186 1.00 2898 179 0.1403 0.1704 REMARK 3 5 3.7186 - 3.4522 1.00 2935 184 0.1447 0.1857 REMARK 3 6 3.4522 - 3.2487 1.00 3000 148 0.1534 0.1895 REMARK 3 7 3.2487 - 3.0860 1.00 2915 186 0.1680 0.1977 REMARK 3 8 3.0860 - 2.9517 1.00 3008 124 0.1763 0.2424 REMARK 3 9 2.9517 - 2.8381 1.00 2932 174 0.1750 0.2266 REMARK 3 10 2.8381 - 2.7402 1.00 2949 162 0.1800 0.2094 REMARK 3 11 2.7402 - 2.6545 1.00 2929 167 0.1723 0.2285 REMARK 3 12 2.6545 - 2.5786 1.00 2931 169 0.1691 0.2339 REMARK 3 13 2.5786 - 2.5108 1.00 2974 149 0.1750 0.2542 REMARK 3 14 2.5108 - 2.4495 1.00 2956 171 0.1667 0.2025 REMARK 3 15 2.4495 - 2.3938 1.00 2934 151 0.1672 0.2061 REMARK 3 16 2.3938 - 2.3429 1.00 3029 124 0.1721 0.2329 REMARK 3 17 2.3429 - 2.2960 1.00 2983 132 0.1611 0.2454 REMARK 3 18 2.2960 - 2.2527 1.00 2965 170 0.1686 0.2014 REMARK 3 19 2.2527 - 2.2125 1.00 2921 154 0.1636 0.2359 REMARK 3 20 2.2125 - 2.1750 1.00 2987 130 0.1668 0.2011 REMARK 3 21 2.1750 - 2.1399 1.00 3018 150 0.1608 0.1927 REMARK 3 22 2.1399 - 2.1070 1.00 2931 131 0.1711 0.2200 REMARK 3 23 2.1070 - 2.0760 1.00 2951 160 0.1976 0.2253 REMARK 3 24 2.0760 - 2.0467 1.00 2945 147 0.2057 0.2760 REMARK 3 25 2.0467 - 2.0191 1.00 2960 143 0.2211 0.2535 REMARK 3 26 2.0191 - 1.9928 1.00 2986 186 0.2181 0.2588 REMARK 3 27 1.9928 - 1.9679 1.00 2925 161 0.2319 0.2548 REMARK 3 28 1.9679 - 1.9442 1.00 2971 166 0.2372 0.3040 REMARK 3 29 1.9442 - 1.9216 1.00 2962 160 0.2505 0.2379 REMARK 3 30 1.9216 - 1.9000 1.00 2938 153 0.2689 0.3110 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 47.08 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.21410 REMARK 3 B22 (A**2) : 2.21410 REMARK 3 B33 (A**2) : -4.42820 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5186 REMARK 3 ANGLE : 1.102 7149 REMARK 3 CHIRALITY : 0.071 779 REMARK 3 PLANARITY : 0.005 835 REMARK 3 DIHEDRAL : 16.164 2038 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 294:832) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9951 -23.7493 -9.8850 REMARK 3 T TENSOR REMARK 3 T11: 0.1532 T22: 0.1582 REMARK 3 T33: 0.1402 T12: -0.0278 REMARK 3 T13: 0.0113 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 0.8238 L22: 0.6941 REMARK 3 L33: 1.0990 L12: 0.1666 REMARK 3 L13: -0.1209 L23: -0.0296 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: -0.0159 S13: -0.0361 REMARK 3 S21: -0.0378 S22: 0.0145 S23: 0.0070 REMARK 3 S31: 0.0167 S32: -0.1028 S33: -0.0103 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESID 101:112) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5349 -22.8076 4.1598 REMARK 3 T TENSOR REMARK 3 T11: 0.2282 T22: 0.2626 REMARK 3 T33: 0.2515 T12: 0.0302 REMARK 3 T13: -0.0051 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 6.0627 L22: 1.0566 REMARK 3 L33: 1.8876 L12: 0.6751 REMARK 3 L13: 0.6599 L23: -0.2916 REMARK 3 S TENSOR REMARK 3 S11: 0.0664 S12: 0.0097 S13: -0.6743 REMARK 3 S21: 0.1137 S22: -0.0853 S23: -0.0663 REMARK 3 S31: 0.0963 S32: 0.7452 S33: -0.0060 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN C AND RESID 201:216) REMARK 3 ORIGIN FOR THE GROUP (A): 32.6364 -22.9314 6.4287 REMARK 3 T TENSOR REMARK 3 T11: 0.1917 T22: 0.2915 REMARK 3 T33: 0.1160 T12: 0.0287 REMARK 3 T13: 0.0134 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.9931 L22: 3.4519 REMARK 3 L33: 1.9500 L12: 0.9462 REMARK 3 L13: 0.8408 L23: 0.0412 REMARK 3 S TENSOR REMARK 3 S11: -0.2706 S12: -0.5526 S13: -0.0952 REMARK 3 S21: 0.2938 S22: 0.1051 S23: -0.0328 REMARK 3 S31: 0.1127 S32: -0.1154 S33: 0.1496 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RTV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065370. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : LN2 COOLED FIXED-EXIT, SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 46.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.920 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.09900 REMARK 200 FOR SHELL : 2.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER REMARK 200 TECHNIQUES REMARK 200 SOFTWARE USED: PHENIX 1.7.1_743 REMARK 200 STARTING MODEL: PDB ENTRY 3M8S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M SODIUM CACODYLATE, 0.2M AMMONIUM REMARK 280 ACETATE, 0.01M MAGNESIUM ACETATE, 30% PEG 4000, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.12700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.25400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.25400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.12700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 101 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC B 103 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG B 108 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC B 109 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG C 206 O4' - C4' - C3' ANGL. DEV. = -2.4 DEGREES REMARK 500 DG C 214 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 328 148.54 -174.71 REMARK 500 ASP A 381 108.92 -166.74 REMARK 500 THR A 399 -167.82 -107.93 REMARK 500 VAL A 433 -68.75 -123.41 REMARK 500 TYR A 545 -54.23 -126.87 REMARK 500 VAL A 586 -14.68 -158.40 REMARK 500 HIS A 784 -64.17 72.62 REMARK 500 TYR A 811 95.22 -164.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 2 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DCP A 1 O1A REMARK 620 2 ASP A 610 OD2 101.3 REMARK 620 3 ASP A 785 OD1 85.3 110.7 REMARK 620 4 HOH A 840 O 161.1 96.2 94.9 REMARK 620 5 HOH A 842 O 81.0 90.2 157.0 92.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 833 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DCP A 1 O2G REMARK 620 2 DCP A 1 O1A 92.0 REMARK 620 3 DCP A 1 O2B 87.0 87.7 REMARK 620 4 ASP A 610 OD1 85.7 98.6 170.5 REMARK 620 5 TYR A 611 O 90.1 175.6 88.5 85.5 REMARK 620 6 ASP A 785 OD2 175.0 92.4 95.5 91.3 85.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 60 O REMARK 620 2 HOH B 66 O 81.1 REMARK 620 3 HOH B 174 O 83.0 87.3 REMARK 620 4 HOH B 255 O 83.5 162.2 82.0 REMARK 620 5 HOH C 285 O 166.7 100.5 83.8 92.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCP A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 833 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 834 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 835 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 836 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 837 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 838 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KTQ RELATED DB: PDB DBREF 3RTV A 293 832 UNP P19821 DPO1_THEAQ 293 832 DBREF 3RTV B 101 112 PDB 3RTV 3RTV 101 112 DBREF 3RTV C 201 216 PDB 3RTV 3RTV 201 216 SEQRES 1 A 540 ALA LEU GLU GLU ALA PRO TRP PRO PRO PRO GLU GLY ALA SEQRES 2 A 540 PHE VAL GLY PHE VAL LEU SER ARG LYS GLU PRO MET TRP SEQRES 3 A 540 ALA ASP LEU LEU ALA LEU ALA ALA ALA ARG GLY GLY ARG SEQRES 4 A 540 VAL HIS ARG ALA PRO GLU PRO TYR LYS ALA LEU ARG ASP SEQRES 5 A 540 LEU LYS GLU ALA ARG GLY LEU LEU ALA LYS ASP LEU SER SEQRES 6 A 540 VAL LEU ALA LEU ARG GLU GLY LEU GLY LEU PRO PRO GLY SEQRES 7 A 540 ASP ASP PRO MET LEU LEU ALA TYR LEU LEU ASP PRO SER SEQRES 8 A 540 ASN THR THR PRO GLU GLY VAL ALA ARG ARG TYR GLY GLY SEQRES 9 A 540 GLU TRP THR GLU GLU ALA GLY GLU ARG ALA ALA LEU SER SEQRES 10 A 540 GLU ARG LEU PHE ALA ASN LEU TRP GLY ARG LEU GLU GLY SEQRES 11 A 540 GLU GLU ARG LEU LEU TRP LEU TYR ARG GLU VAL GLU ARG SEQRES 12 A 540 PRO LEU SER ALA VAL LEU ALA HIS MET GLU ALA THR GLY SEQRES 13 A 540 VAL ARG LEU ASP VAL ALA TYR LEU ARG ALA LEU SER LEU SEQRES 14 A 540 GLU VAL ALA GLU GLU ILE ALA ARG LEU GLU ALA GLU VAL SEQRES 15 A 540 PHE ARG LEU ALA GLY HIS PRO PHE ASN LEU ASN SER ARG SEQRES 16 A 540 ASP GLN LEU GLU ARG VAL LEU PHE ASP GLU LEU GLY LEU SEQRES 17 A 540 PRO ALA ILE GLY LYS THR GLU LYS THR GLY LYS ARG SER SEQRES 18 A 540 THR SER ALA ALA VAL LEU GLU ALA LEU ARG GLU ALA HIS SEQRES 19 A 540 PRO ILE VAL GLU LYS ILE LEU GLN TYR ARG GLU LEU THR SEQRES 20 A 540 LYS LEU LYS SER THR TYR ILE ASP PRO LEU PRO ASP LEU SEQRES 21 A 540 ILE HIS PRO ARG THR GLY ARG LEU HIS THR ARG PHE ASN SEQRES 22 A 540 GLN THR ALA THR ALA THR GLY ARG LEU SER SER SER ASP SEQRES 23 A 540 PRO ASN LEU GLN ASN ILE PRO VAL ARG THR PRO LEU GLY SEQRES 24 A 540 GLN ARG ILE ARG ARG ALA PHE ILE ALA GLU GLU GLY TRP SEQRES 25 A 540 LEU LEU VAL ALA LEU ASP TYR SER GLN ILE GLU LEU ARG SEQRES 26 A 540 VAL LEU ALA HIS LEU SER GLY ASP GLU ASN LEU ILE ARG SEQRES 27 A 540 VAL PHE GLN GLU GLY ARG ASP ILE HIS THR GLU THR ALA SEQRES 28 A 540 SER TRP MET PHE GLY VAL PRO ARG GLU ALA VAL ASP PRO SEQRES 29 A 540 LEU MET ARG ARG ALA ALA LYS THR ILE ASN PHE GLY VAL SEQRES 30 A 540 LEU TYR GLY MET SER ALA HIS ARG LEU SER GLN GLU LEU SEQRES 31 A 540 ALA ILE PRO TYR GLU GLU ALA GLN ALA PHE ILE GLU ARG SEQRES 32 A 540 TYR PHE GLN SER PHE PRO LYS VAL ARG ALA TRP ILE GLU SEQRES 33 A 540 LYS THR LEU GLU GLU GLY ARG ARG ARG GLY TYR VAL GLU SEQRES 34 A 540 THR LEU PHE GLY ARG ARG ARG TYR VAL PRO ASP LEU GLU SEQRES 35 A 540 ALA ARG VAL LYS SER VAL ARG GLU ALA ALA GLU ARG MET SEQRES 36 A 540 ALA PHE ASN MET PRO VAL GLN GLY THR ALA ALA ASP LEU SEQRES 37 A 540 MET LYS LEU ALA MET VAL LYS LEU PHE PRO ARG LEU GLU SEQRES 38 A 540 GLU MET GLY ALA ARG MET LEU LEU GLN VAL HIS ASP GLU SEQRES 39 A 540 LEU VAL LEU GLU ALA PRO LYS GLU ARG ALA GLU ALA VAL SEQRES 40 A 540 ALA ARG LEU ALA LYS GLU VAL MET GLU GLY VAL TYR PRO SEQRES 41 A 540 LEU ALA VAL PRO LEU GLU VAL GLU VAL GLY ILE GLY GLU SEQRES 42 A 540 ASP TRP LEU SER ALA LYS GLU SEQRES 1 B 12 DG DA DC DC DA DC DG DG DC DG DC DDG SEQRES 1 C 16 DA DA DA DG DC DG DC DG DC DC DG DT DG SEQRES 2 C 16 DG DT DC MODRES 3RTV DDG B 112 DG HET DDG B 112 21 HET DCP A 1 28 HET MG A 833 1 HET MG A 2 1 HET GOL A 834 6 HET GOL A 3 6 HET GOL A 4 6 HET GOL A 5 6 HET ACT A 835 4 HET ACT A 836 4 HET ACT A 837 4 HET GOL A 838 6 HET MG B 1 1 HET GOL C 1 6 HETNAM DDG 2',3'-DIDEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 DDG C10 H14 N5 O6 P FORMUL 4 DCP C9 H16 N3 O13 P3 FORMUL 5 MG 3(MG 2+) FORMUL 7 GOL 6(C3 H8 O3) FORMUL 11 ACT 3(C2 H3 O2 1-) FORMUL 17 HOH *331(H2 O) HELIX 1 1 GLU A 337 ARG A 343 1 7 HELIX 2 2 LEU A 352 GLU A 363 1 12 HELIX 3 3 ASP A 372 ASP A 381 1 10 HELIX 4 4 THR A 386 GLY A 395 1 10 HELIX 5 5 GLU A 401 GLU A 421 1 21 HELIX 6 6 GLU A 423 VAL A 433 1 11 HELIX 7 7 VAL A 433 GLY A 448 1 16 HELIX 8 8 ASP A 452 GLY A 479 1 28 HELIX 9 9 SER A 486 ASP A 496 1 11 HELIX 10 10 SER A 515 LEU A 522 1 8 HELIX 11 11 PRO A 527 TYR A 545 1 19 HELIX 12 12 PRO A 548 ILE A 553 5 6 HELIX 13 13 THR A 588 ARG A 596 1 9 HELIX 14 14 GLN A 613 GLY A 624 1 12 HELIX 15 15 ASP A 625 GLU A 634 1 10 HELIX 16 16 ASP A 637 PHE A 647 1 11 HELIX 17 17 PRO A 650 VAL A 654 5 5 HELIX 18 18 ASP A 655 TYR A 671 1 17 HELIX 19 19 SER A 674 ALA A 683 1 10 HELIX 20 20 PRO A 685 PHE A 700 1 16 HELIX 21 21 PRO A 701 GLY A 718 1 18 HELIX 22 22 PRO A 731 ALA A 735 5 5 HELIX 23 23 VAL A 737 MET A 775 1 39 HELIX 24 24 ARG A 795 GLY A 809 1 15 HELIX 25 25 LEU A 828 GLU A 832 5 5 SHEET 1 A 4 GLU A 295 ALA A 297 0 SHEET 2 A 4 ARG A 331 ARG A 334 1 O VAL A 332 N ALA A 297 SHEET 3 A 4 LEU A 321 ARG A 328 -1 N ALA A 326 O HIS A 333 SHEET 4 A 4 PHE A 306 LEU A 311 -1 N GLY A 308 O ALA A 325 SHEET 1 B 2 ARG A 450 LEU A 451 0 SHEET 2 B 2 PHE A 598 ILE A 599 -1 O ILE A 599 N ARG A 450 SHEET 1 C 2 ARG A 563 ASN A 565 0 SHEET 2 C 2 SER A 575 SER A 577 -1 O SER A 577 N ARG A 563 SHEET 1 D 4 ARG A 778 GLN A 782 0 SHEET 2 D 4 GLU A 786 PRO A 792 -1 O GLU A 790 N ARG A 778 SHEET 3 D 4 TRP A 604 TYR A 611 -1 N VAL A 607 O LEU A 789 SHEET 4 D 4 VAL A 819 GLY A 824 -1 O GLY A 824 N LEU A 606 SHEET 1 E 2 TYR A 719 GLU A 721 0 SHEET 2 E 2 ARG A 727 TYR A 729 -1 O ARG A 728 N VAL A 720 LINK O3' DC B 111 P DDG B 112 1555 1555 1.60 LINK O1A DCP A 1 MG MG A 2 1555 1555 2.39 LINK O2G DCP A 1 MG MG A 833 1555 1555 2.14 LINK O1A DCP A 1 MG MG A 833 1555 1555 2.17 LINK O2B DCP A 1 MG MG A 833 1555 1555 2.26 LINK MG MG A 2 OD2 ASP A 610 1555 1555 2.44 LINK MG MG A 2 OD1 ASP A 785 1555 1555 2.33 LINK MG MG A 2 O HOH A 840 1555 1555 2.37 LINK MG MG A 2 O HOH A 842 1555 1555 2.43 LINK OD1 ASP A 610 MG MG A 833 1555 1555 2.17 LINK O TYR A 611 MG MG A 833 1555 1555 2.20 LINK OD2 ASP A 785 MG MG A 833 1555 1555 2.14 LINK MG MG B 1 O HOH B 60 1555 1555 2.27 LINK MG MG B 1 O HOH B 66 1555 1555 2.10 LINK MG MG B 1 O HOH B 174 1555 1555 2.36 LINK MG MG B 1 O HOH B 255 1555 1555 2.26 LINK MG MG B 1 O HOH C 285 1555 1555 2.07 CISPEP 1 TRP A 299 PRO A 300 0 1.96 CISPEP 2 ASP A 578 PRO A 579 0 1.55 SITE 1 AC1 23 MG A 2 HOH A 6 HOH A 30 HOH A 188 SITE 2 AC1 23 HOH A 204 ARG A 573 ASP A 610 TYR A 611 SITE 3 AC1 23 SER A 612 GLN A 613 ILE A 614 GLU A 615 SITE 4 AC1 23 HIS A 639 ARG A 659 LYS A 663 PHE A 667 SITE 5 AC1 23 ASP A 785 MG A 833 HOH A 841 HOH A 842 SITE 6 AC1 23 HOH B 19 DDG B 112 DG C 204 SITE 1 AC2 5 DCP A 1 MG A 2 ASP A 610 TYR A 611 SITE 2 AC2 5 ASP A 785 SITE 1 AC3 7 DCP A 1 ASP A 610 ASP A 785 MG A 833 SITE 2 AC3 7 HOH A 840 HOH A 842 DDG B 112 SITE 1 AC4 2 ARG A 313 TRP A 318 SITE 1 AC5 4 HOH A 41 ARG A 425 TRP A 428 TYR A 811 SITE 1 AC6 8 HOH A 190 THR A 544 TYR A 545 PRO A 579 SITE 2 AC6 8 ASN A 580 ASN A 583 DC C 209 DC C 210 SITE 1 AC7 6 HOH A 282 ASP A 452 TYR A 455 ARG A 596 SITE 2 AC7 6 ASP A 826 HOH A 854 SITE 1 AC8 6 HOH A 175 HOH A 225 GLU A 462 GLU A 466 SITE 2 AC8 6 ARG A 593 GLU A 825 SITE 1 AC9 1 ILE A 684 SITE 1 BC1 4 ASP A 371 TRP A 417 ARG A 431 ARG A 435 SITE 1 BC2 6 LEU A 711 GLU A 742 GLU A 745 ARG A 746 SITE 2 BC2 6 PHE A 749 HOH C 323 SITE 1 BC3 5 HOH B 60 HOH B 66 HOH B 174 HOH B 255 SITE 2 BC3 5 HOH C 285 SITE 1 BC4 5 ALA A 570 ARG A 728 HOH C 164 DG C 206 SITE 2 BC4 5 DC C 207 CRYST1 108.296 108.296 90.381 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009234 0.005331 0.000000 0.00000 SCALE2 0.000000 0.010662 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011064 0.00000