HEADER HYDROLASE/HYDROLASE INHIBITOR 05-MAY-11 3RUO TITLE COMPLEX STRUCTURE OF HEVB EV93 MAIN PROTEASE 3C WITH RUPINTRIVIR TITLE 2 (AG7088) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEVB EV93 3C PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.22.28; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ENTEROVIRUS B; SOURCE 3 ORGANISM_TAXID: 138949; SOURCE 4 GENE: 3C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST14 KEYWDS CYSTEINE TRYPSIN-LIKE PROTEASE, 3C CYSTEINE PROTEASE (PICORNAIN 3C), KEYWDS 2 RUPINTRIVIR (AG7088), COVALENTLY BOUND INHIBITOR, HYDROLASE- KEYWDS 3 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.KACZMARSKA,R.JANOWSKI,L.COSTENARO,B.COUTARD,H.NORDER,B.CANARD, AUTHOR 2 M.COLL REVDAT 3 13-SEP-23 3RUO 1 REMARK SEQADV LINK REVDAT 2 05-OCT-11 3RUO 1 JRNL REVDAT 1 07-SEP-11 3RUO 0 JRNL AUTH L.COSTENARO,Z.KACZMARSKA,C.ARNAN,R.JANOWSKI,B.COUTARD, JRNL AUTH 2 M.SOLA,A.E.GORBALENYA,H.NORDER,B.CANARD,M.COLL JRNL TITL STRUCTURAL BASIS FOR ANTIVIRAL INHIBITION OF THE MAIN JRNL TITL 2 PROTEASE, 3C, FROM HUMAN ENTEROVIRUS 93. JRNL REF J.VIROL. V. 85 10764 2011 JRNL REFN ISSN 0022-538X JRNL PMID 21835784 JRNL DOI 10.1128/JVI.05062-11 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 49523 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2658 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7138 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 394 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2842 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 89 REMARK 3 SOLVENT ATOMS : 376 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.24000 REMARK 3 B22 (A**2) : 0.72000 REMARK 3 B33 (A**2) : -0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.851 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3203 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4366 ; 1.409 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 418 ; 5.905 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;31.196 ;23.931 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 552 ;11.828 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.193 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 476 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2481 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1902 ; 0.528 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3085 ; 1.028 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1301 ; 2.325 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1253 ; 3.733 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 48 REMARK 3 ORIGIN FOR THE GROUP (A): -11.1506 10.8671 -0.9255 REMARK 3 T TENSOR REMARK 3 T11: 0.0154 T22: 0.0236 REMARK 3 T33: 0.0339 T12: -0.0095 REMARK 3 T13: 0.0004 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.6222 L22: 0.9796 REMARK 3 L33: 0.8946 L12: -0.4170 REMARK 3 L13: -0.3466 L23: 0.0546 REMARK 3 S TENSOR REMARK 3 S11: 0.0257 S12: -0.0874 S13: 0.0000 REMARK 3 S21: -0.0346 S22: 0.0166 S23: -0.1196 REMARK 3 S31: -0.0225 S32: 0.0586 S33: -0.0423 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 78 REMARK 3 ORIGIN FOR THE GROUP (A): -17.3487 6.7622 6.5499 REMARK 3 T TENSOR REMARK 3 T11: 0.0359 T22: 0.0543 REMARK 3 T33: 0.0416 T12: 0.0046 REMARK 3 T13: 0.0103 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 3.5771 L22: 0.9579 REMARK 3 L33: 1.2408 L12: -1.0254 REMARK 3 L13: 0.0633 L23: 0.8107 REMARK 3 S TENSOR REMARK 3 S11: -0.1251 S12: -0.4007 S13: -0.0162 REMARK 3 S21: 0.1271 S22: 0.0853 S23: 0.0036 REMARK 3 S31: 0.1098 S32: -0.0452 S33: 0.0398 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): -12.7238 20.4493 6.1825 REMARK 3 T TENSOR REMARK 3 T11: 0.0389 T22: 0.0475 REMARK 3 T33: 0.0373 T12: -0.0265 REMARK 3 T13: -0.0041 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 5.9826 L22: 2.4323 REMARK 3 L33: 2.4153 L12: -2.6011 REMARK 3 L13: 2.2890 L23: -0.9266 REMARK 3 S TENSOR REMARK 3 S11: -0.0884 S12: -0.1538 S13: 0.1217 REMARK 3 S21: 0.1048 S22: 0.1041 S23: -0.1784 REMARK 3 S31: -0.2158 S32: 0.1632 S33: -0.0157 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 182 REMARK 3 ORIGIN FOR THE GROUP (A): -22.0379 14.5074 -7.9087 REMARK 3 T TENSOR REMARK 3 T11: 0.0244 T22: 0.0108 REMARK 3 T33: 0.0165 T12: -0.0031 REMARK 3 T13: -0.0044 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.0593 L22: 0.8559 REMARK 3 L33: 0.9042 L12: -0.1570 REMARK 3 L13: -0.2362 L23: -0.0820 REMARK 3 S TENSOR REMARK 3 S11: 0.0341 S12: 0.0406 S13: -0.0101 REMARK 3 S21: -0.0698 S22: -0.0188 S23: 0.0369 REMARK 3 S31: -0.0085 S32: -0.0763 S33: -0.0152 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 40 REMARK 3 ORIGIN FOR THE GROUP (A): -8.0165 17.8945 -31.7513 REMARK 3 T TENSOR REMARK 3 T11: 0.0330 T22: 0.0168 REMARK 3 T33: 0.0489 T12: -0.0026 REMARK 3 T13: 0.0047 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.2905 L22: 1.0010 REMARK 3 L33: 2.0314 L12: 0.5794 REMARK 3 L13: 0.1198 L23: 0.3229 REMARK 3 S TENSOR REMARK 3 S11: 0.0336 S12: 0.1092 S13: 0.0295 REMARK 3 S21: 0.1070 S22: -0.0001 S23: 0.1233 REMARK 3 S31: -0.0800 S32: 0.0010 S33: -0.0335 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 41 B 78 REMARK 3 ORIGIN FOR THE GROUP (A): -3.3634 13.3948 -42.0157 REMARK 3 T TENSOR REMARK 3 T11: 0.0159 T22: 0.0907 REMARK 3 T33: 0.0211 T12: -0.0050 REMARK 3 T13: 0.0040 T23: -0.0307 REMARK 3 L TENSOR REMARK 3 L11: 1.4294 L22: 0.7569 REMARK 3 L33: 0.7765 L12: 0.3570 REMARK 3 L13: 0.0973 L23: -0.5093 REMARK 3 S TENSOR REMARK 3 S11: -0.0381 S12: 0.3110 S13: -0.0292 REMARK 3 S21: -0.0626 S22: 0.0424 S23: 0.0073 REMARK 3 S31: 0.0331 S32: 0.0372 S33: -0.0043 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 79 B 93 REMARK 3 ORIGIN FOR THE GROUP (A): -7.2605 27.4642 -36.8663 REMARK 3 T TENSOR REMARK 3 T11: 0.1722 T22: 0.1020 REMARK 3 T33: 0.2368 T12: -0.0195 REMARK 3 T13: -0.0249 T23: 0.0798 REMARK 3 L TENSOR REMARK 3 L11: -0.0911 L22: 1.2154 REMARK 3 L33: 1.3451 L12: 0.1285 REMARK 3 L13: -0.2243 L23: 1.1236 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: 0.1228 S13: 0.2148 REMARK 3 S21: -0.0867 S22: -0.0587 S23: 0.3285 REMARK 3 S31: -0.2798 S32: -0.1143 S33: 0.0666 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 94 B 180 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4486 17.6770 -25.2821 REMARK 3 T TENSOR REMARK 3 T11: 0.0320 T22: 0.0143 REMARK 3 T33: 0.0186 T12: -0.0060 REMARK 3 T13: -0.0032 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.6898 L22: 0.7122 REMARK 3 L33: 1.5577 L12: 0.1663 REMARK 3 L13: -0.3130 L23: 0.1390 REMARK 3 S TENSOR REMARK 3 S11: 0.0356 S12: -0.0463 S13: -0.0235 REMARK 3 S21: 0.0617 S22: -0.0135 S23: -0.0379 REMARK 3 S31: -0.0033 S32: 0.1484 S33: -0.0221 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RUO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065398. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.872600 REMARK 200 MONOCHROMATOR : HORIZONTALLY SIDE DIFFRACTING REMARK 200 SILICON 111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52513 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3Q3Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.25 M MGCL2, 0.1 M TRIS, 25% PEG 8K, REMARK 280 PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.95550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 183 REMARK 465 HIS A 184 REMARK 465 HIS A 185 REMARK 465 HIS A 186 REMARK 465 HIS A 187 REMARK 465 HIS A 188 REMARK 465 HIS A 189 REMARK 465 MET B -1 REMARK 465 GLU B 181 REMARK 465 GLU B 182 REMARK 465 GLN B 183 REMARK 465 HIS B 184 REMARK 465 HIS B 185 REMARK 465 HIS B 186 REMARK 465 HIS B 187 REMARK 465 HIS B 188 REMARK 465 HIS B 189 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O23 AG7 A 190 O HOH A 535 2.07 REMARK 500 O HOH B 270 O HOH B 271 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 32 -120.16 47.36 REMARK 500 ASN A 111 66.50 -155.79 REMARK 500 PRO A 141 99.25 -69.80 REMARK 500 ASP B 32 -118.27 43.38 REMARK 500 ASP B 32 -118.76 44.17 REMARK 500 ASN B 111 66.27 -159.86 REMARK 500 PRO B 141 99.77 -67.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 191 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 229 O REMARK 620 2 HOH A 233 O 89.0 REMARK 620 3 HOH A 259 O 88.5 88.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 191 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 264 O REMARK 620 2 HOH B 270 O 73.1 REMARK 620 3 HOH B 271 O 117.7 55.9 REMARK 620 4 HOH B 276 O 86.4 159.4 140.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG7 A 190 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 191 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AG7 B 190 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 191 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 192 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3Q3X RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MAIN PROTEASE (3C) FROM HUMAN ENTEROVIRUS REMARK 900 B EV93 REMARK 900 RELATED ID: 3Q3Y RELATED DB: PDB REMARK 900 COMPLEX STRUCTURE OF HEVB EV93 MAIN PROTEASE 3C WITH COMPOUND 1 REMARK 900 (AG7404) REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THIS MAY BE A NATURAL VARIANT. DBREF 3RUO A 1 183 UNP Q5DSM6 Q5DSM6_9ENTO 1556 1738 DBREF 3RUO B 1 183 UNP Q5DSM6 Q5DSM6_9ENTO 1556 1738 SEQADV 3RUO MET A -1 UNP Q5DSM6 EXPRESSION TAG SEQADV 3RUO LYS A 0 UNP Q5DSM6 EXPRESSION TAG SEQADV 3RUO VAL A 137 UNP Q5DSM6 MET 1692 SEE REMARK 999 SEQADV 3RUO HIS A 184 UNP Q5DSM6 EXPRESSION TAG SEQADV 3RUO HIS A 185 UNP Q5DSM6 EXPRESSION TAG SEQADV 3RUO HIS A 186 UNP Q5DSM6 EXPRESSION TAG SEQADV 3RUO HIS A 187 UNP Q5DSM6 EXPRESSION TAG SEQADV 3RUO HIS A 188 UNP Q5DSM6 EXPRESSION TAG SEQADV 3RUO HIS A 189 UNP Q5DSM6 EXPRESSION TAG SEQADV 3RUO MET B -1 UNP Q5DSM6 EXPRESSION TAG SEQADV 3RUO LYS B 0 UNP Q5DSM6 EXPRESSION TAG SEQADV 3RUO VAL B 137 UNP Q5DSM6 MET 1692 SEE REMARK 999 SEQADV 3RUO HIS B 184 UNP Q5DSM6 EXPRESSION TAG SEQADV 3RUO HIS B 185 UNP Q5DSM6 EXPRESSION TAG SEQADV 3RUO HIS B 186 UNP Q5DSM6 EXPRESSION TAG SEQADV 3RUO HIS B 187 UNP Q5DSM6 EXPRESSION TAG SEQADV 3RUO HIS B 188 UNP Q5DSM6 EXPRESSION TAG SEQADV 3RUO HIS B 189 UNP Q5DSM6 EXPRESSION TAG SEQRES 1 A 191 MET LYS GLY PRO ALA PHE GLU PHE ALA VAL ALA MET MET SEQRES 2 A 191 LYS ARG ASN ALA SER THR VAL LYS THR GLU TYR GLY GLU SEQRES 3 A 191 PHE THR MET LEU GLY ILE TYR ASP ARG TRP ALA VAL LEU SEQRES 4 A 191 PRO ARG HIS ALA LYS PRO GLY PRO THR ILE LEU MET ASN SEQRES 5 A 191 ASP GLN GLU VAL GLY VAL LEU ASP ALA LYS GLU LEU VAL SEQRES 6 A 191 ASP LYS ASP GLY THR ASN LEU GLU LEU THR LEU LEU LYS SEQRES 7 A 191 LEU ASN ARG ASN GLU LYS PHE ARG ASP ILE ARG GLY PHE SEQRES 8 A 191 LEU ALA ARG GLU GLU VAL GLU VAL ASN GLU ALA VAL LEU SEQRES 9 A 191 ALA ILE ASN THR SER LYS PHE PRO ASN MET TYR ILE PRO SEQRES 10 A 191 VAL GLY GLN VAL THR ASP TYR GLY PHE LEU ASN LEU GLY SEQRES 11 A 191 GLY THR PRO THR LYS ARG MET LEU VAL TYR ASN PHE PRO SEQRES 12 A 191 THR ARG ALA GLY GLN CYS GLY GLY VAL LEU MET SER THR SEQRES 13 A 191 GLY LYS VAL LEU GLY ILE HIS VAL GLY GLY ASN GLY HIS SEQRES 14 A 191 GLN GLY PHE SER ALA ALA LEU LEU ARG HIS TYR PHE ASN SEQRES 15 A 191 GLU GLU GLN HIS HIS HIS HIS HIS HIS SEQRES 1 B 191 MET LYS GLY PRO ALA PHE GLU PHE ALA VAL ALA MET MET SEQRES 2 B 191 LYS ARG ASN ALA SER THR VAL LYS THR GLU TYR GLY GLU SEQRES 3 B 191 PHE THR MET LEU GLY ILE TYR ASP ARG TRP ALA VAL LEU SEQRES 4 B 191 PRO ARG HIS ALA LYS PRO GLY PRO THR ILE LEU MET ASN SEQRES 5 B 191 ASP GLN GLU VAL GLY VAL LEU ASP ALA LYS GLU LEU VAL SEQRES 6 B 191 ASP LYS ASP GLY THR ASN LEU GLU LEU THR LEU LEU LYS SEQRES 7 B 191 LEU ASN ARG ASN GLU LYS PHE ARG ASP ILE ARG GLY PHE SEQRES 8 B 191 LEU ALA ARG GLU GLU VAL GLU VAL ASN GLU ALA VAL LEU SEQRES 9 B 191 ALA ILE ASN THR SER LYS PHE PRO ASN MET TYR ILE PRO SEQRES 10 B 191 VAL GLY GLN VAL THR ASP TYR GLY PHE LEU ASN LEU GLY SEQRES 11 B 191 GLY THR PRO THR LYS ARG MET LEU VAL TYR ASN PHE PRO SEQRES 12 B 191 THR ARG ALA GLY GLN CYS GLY GLY VAL LEU MET SER THR SEQRES 13 B 191 GLY LYS VAL LEU GLY ILE HIS VAL GLY GLY ASN GLY HIS SEQRES 14 B 191 GLN GLY PHE SER ALA ALA LEU LEU ARG HIS TYR PHE ASN SEQRES 15 B 191 GLU GLU GLN HIS HIS HIS HIS HIS HIS HET AG7 A 190 49 HET MG A 191 1 HET AG7 B 190 43 HET MG B 191 1 HET CL B 192 1 HETNAM AG7 4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE- HETNAM 2 AG7 3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO- HETNAM 3 AG7 PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETSYN AG7 RUPINTRIVIR, BOUND FORM FORMUL 3 AG7 2(C31 H41 F N4 O7) FORMUL 4 MG 2(MG 2+) FORMUL 7 CL CL 1- FORMUL 8 HOH *376(H2 O) HELIX 1 1 LYS A 0 ASN A 14 1 15 HELIX 2 2 HIS A 40 LYS A 42 5 3 HELIX 3 3 ILE A 86 LEU A 90 5 5 HELIX 4 4 LEU A 175 ASN A 180 5 6 HELIX 5 5 LYS B 0 ASN B 14 1 15 HELIX 6 6 HIS B 40 LYS B 42 5 3 HELIX 7 7 ILE B 86 LEU B 90 5 5 HELIX 8 8 LEU B 175 ASN B 180 5 6 SHEET 1 A 7 ALA A 15 THR A 20 0 SHEET 2 A 7 GLY A 23 TYR A 31 -1 O PHE A 25 N VAL A 18 SHEET 3 A 7 TRP A 34 PRO A 38 -1 O TRP A 34 N ILE A 30 SHEET 4 A 7 ASN A 69 LEU A 77 -1 O LEU A 75 N ALA A 35 SHEET 5 A 7 GLN A 52 VAL A 63 -1 N LEU A 57 O LYS A 76 SHEET 6 A 7 THR A 46 MET A 49 -1 N MET A 49 O GLN A 52 SHEET 7 A 7 ALA A 15 THR A 20 -1 N LYS A 19 O LEU A 48 SHEET 1 B 7 VAL A 97 ILE A 104 0 SHEET 2 B 7 MET A 112 LEU A 127 -1 O MET A 112 N ILE A 104 SHEET 3 B 7 THR A 130 ASN A 139 -1 O VAL A 137 N THR A 120 SHEET 4 B 7 GLN A 168 ALA A 173 -1 O GLY A 169 N TYR A 138 SHEET 5 B 7 LYS A 156 ASN A 165 -1 N GLY A 163 O PHE A 170 SHEET 6 B 7 VAL A 150 SER A 153 -1 N LEU A 151 O GLY A 159 SHEET 7 B 7 VAL A 97 ILE A 104 -1 N VAL A 101 O MET A 152 SHEET 1 C 7 ALA B 15 THR B 20 0 SHEET 2 C 7 GLY B 23 TYR B 31 -1 O PHE B 25 N VAL B 18 SHEET 3 C 7 TRP B 34 PRO B 38 -1 O TRP B 34 N TYR B 31 SHEET 4 C 7 ASN B 69 LEU B 77 -1 O THR B 73 N LEU B 37 SHEET 5 C 7 GLN B 52 VAL B 63 -1 N LYS B 60 O LEU B 74 SHEET 6 C 7 THR B 46 MET B 49 -1 N MET B 49 O GLN B 52 SHEET 7 C 7 ALA B 15 THR B 20 -1 N LYS B 19 O LEU B 48 SHEET 1 D 7 VAL B 97 ILE B 104 0 SHEET 2 D 7 MET B 112 LEU B 127 -1 O MET B 112 N ILE B 104 SHEET 3 D 7 THR B 130 ASN B 139 -1 O THR B 132 N LEU B 125 SHEET 4 D 7 GLN B 168 ALA B 173 -1 O GLY B 169 N TYR B 138 SHEET 5 D 7 LYS B 156 ASN B 165 -1 N VAL B 162 O PHE B 170 SHEET 6 D 7 VAL B 150 SER B 153 -1 N LEU B 151 O GLY B 159 SHEET 7 D 7 VAL B 97 ILE B 104 -1 N VAL B 101 O MET B 152 LINK SG CYS A 147 C19 AG7 A 190 1555 1555 1.81 LINK SG CYS B 147 C19 AG7 B 190 1555 1555 1.81 LINK MG MG A 191 O HOH A 229 1555 1555 2.00 LINK MG MG A 191 O HOH A 233 1555 1555 2.15 LINK MG MG A 191 O HOH A 259 1555 1555 2.12 LINK MG MG B 191 O HOH B 264 1555 1555 2.05 LINK MG MG B 191 O HOH B 270 1555 1555 2.14 LINK MG MG B 191 O HOH B 271 1555 1555 2.37 LINK MG MG B 191 O HOH B 276 1555 1555 1.93 SITE 1 AC1 23 TYR A 22 GLY A 23 GLU A 24 PHE A 25 SITE 2 AC1 23 ARG A 39 HIS A 40 GLU A 71 LEU A 127 SITE 3 AC1 23 GLY A 128 THR A 130 THR A 142 GLY A 145 SITE 4 AC1 23 CYS A 147 HIS A 161 VAL A 162 GLY A 163 SITE 5 AC1 23 GLY A 164 ASN A 165 PHE A 170 HOH A 332 SITE 6 AC1 23 HOH A 534 HOH A 535 HIS B 167 SITE 1 AC2 3 HOH A 229 HOH A 233 HOH A 259 SITE 1 AC3 19 HIS A 167 ARG B 39 HIS B 40 GLU B 71 SITE 2 AC3 19 LEU B 125 LEU B 127 GLY B 128 THR B 130 SITE 3 AC3 19 THR B 142 ALA B 144 GLY B 145 CYS B 147 SITE 4 AC3 19 HIS B 161 VAL B 162 GLY B 163 GLY B 164 SITE 5 AC3 19 ASN B 165 PHE B 170 HOH B 307 SITE 1 AC4 6 HOH A 383 HOH A 386 HOH B 264 HOH B 270 SITE 2 AC4 6 HOH B 271 HOH B 276 SITE 1 AC5 4 TRP A 34 LYS A 76 GLY B 55 ASN B 78 CRYST1 38.995 63.911 66.357 90.00 90.43 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025644 0.000000 0.000192 0.00000 SCALE2 0.000000 0.015647 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015070 0.00000