HEADER TRANSFERASE 05-MAY-11 3RUY TITLE CRYSTAL STRUCTURE OF THE ORNITHINE-OXO ACID TRANSAMINASE ROCD FROM TITLE 2 BACILLUS ANTHRACIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORNITHINE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: OAT, ORNITHINE-OXO-ACID AMINOTRANSFERASE; COMPND 5 EC: 2.6.1.13; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_COMMON: ANTHRAX,ANTHRAX BACTERIUM; SOURCE 4 ORGANISM_TAXID: 261594; SOURCE 5 STRAIN: AMES ANCESTOR; SOURCE 6 GENE: ROCD, BA_1154, GBAA_1154, BAS1071; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL KEYWDS STRUCTURAL GENOMICS, CSGID, CENTER FOR STRUCTURAL GENOMICS OF KEYWDS 2 INFECTIOUS DISEASES, ALPHA AND BETA PROTEIN, PLP-DEPENDENT, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.M.ANDERSON,Z.WAWRZAK,J.S.BRUNZELLE,O.ONOPRIYENKO,S.N.PETERSON, AUTHOR 2 W.F.ANDERSON,A.SAVCHENKO,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 3 INFECTIOUS DISEASES (CSGID) REVDAT 2 26-MAR-25 3RUY 1 LINK REVDAT 1 18-MAY-11 3RUY 0 JRNL AUTH S.M.ANDERSON,Z.WAWRZAK,J.S.BRUNZELLE,O.ONOPRIYENKO, JRNL AUTH 2 S.N.PETERSON,W.F.ANDERSON,A.SAVCHENKO, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF THE ORNITHINE-OXO ACID TRANSAMINASE JRNL TITL 2 ROCD FROM BACILLUS ANTHRACIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.500 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 25490 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1268 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.7400 - 2.6500 0.83 2253 100 0.3190 0.3640 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 55.84 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.820 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.43170 REMARK 3 B22 (A**2) : 24.70620 REMARK 3 B33 (A**2) : -18.27450 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6127 REMARK 3 ANGLE : 0.748 8330 REMARK 3 CHIRALITY : 0.050 940 REMARK 3 PLANARITY : 0.003 1089 REMARK 3 DIHEDRAL : 14.041 2258 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 3:27) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7666 13.4158 18.4122 REMARK 3 T TENSOR REMARK 3 T11: 0.4938 T22: 1.3318 REMARK 3 T33: 0.9766 T12: -0.0205 REMARK 3 T13: -0.3423 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.8008 L22: 0.5367 REMARK 3 L33: 1.5813 L12: 0.5936 REMARK 3 L13: -0.4138 L23: -0.0652 REMARK 3 S TENSOR REMARK 3 S11: 0.2121 S12: -0.2356 S13: -1.1944 REMARK 3 S21: 0.8898 S22: -1.6166 S23: -0.7375 REMARK 3 S31: 0.9858 S32: 1.1208 S33: -0.6096 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 28:58) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3447 19.9009 2.5300 REMARK 3 T TENSOR REMARK 3 T11: 0.3742 T22: 0.4502 REMARK 3 T33: 0.5728 T12: -0.0338 REMARK 3 T13: -0.0821 T23: -0.0833 REMARK 3 L TENSOR REMARK 3 L11: 0.4489 L22: 0.4464 REMARK 3 L33: 0.4804 L12: -0.2642 REMARK 3 L13: 0.2824 L23: -0.2883 REMARK 3 S TENSOR REMARK 3 S11: -0.0573 S12: -0.1397 S13: 0.2935 REMARK 3 S21: 0.0351 S22: 0.0124 S23: -0.3199 REMARK 3 S31: 0.4262 S32: -0.1867 S33: -0.0049 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 59:83) REMARK 3 ORIGIN FOR THE GROUP (A): -31.5150 9.8912 4.7992 REMARK 3 T TENSOR REMARK 3 T11: 0.4273 T22: 0.6925 REMARK 3 T33: 0.3970 T12: -0.2582 REMARK 3 T13: -0.1569 T23: 0.0382 REMARK 3 L TENSOR REMARK 3 L11: 1.2726 L22: 0.3260 REMARK 3 L33: 0.6884 L12: -0.4169 REMARK 3 L13: -0.7485 L23: 0.4926 REMARK 3 S TENSOR REMARK 3 S11: -0.1396 S12: 0.2098 S13: 0.2223 REMARK 3 S21: -0.3070 S22: 0.3652 S23: 0.2753 REMARK 3 S31: 0.4091 S32: -1.2314 S33: 0.7211 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 84:105) REMARK 3 ORIGIN FOR THE GROUP (A): -26.1215 -0.6074 -5.7945 REMARK 3 T TENSOR REMARK 3 T11: 0.6465 T22: 0.4130 REMARK 3 T33: 0.5202 T12: -0.1635 REMARK 3 T13: -0.1149 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 0.7266 L22: 0.4826 REMARK 3 L33: 3.4421 L12: 0.2359 REMARK 3 L13: 0.6063 L23: -0.5201 REMARK 3 S TENSOR REMARK 3 S11: 0.0816 S12: 0.4497 S13: -0.0390 REMARK 3 S21: -0.2410 S22: -0.1435 S23: 0.3287 REMARK 3 S31: 0.4446 S32: 0.7117 S33: -0.1068 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 106:145) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0701 -14.7487 -0.7237 REMARK 3 T TENSOR REMARK 3 T11: 1.0268 T22: 0.3706 REMARK 3 T33: 0.8241 T12: -0.0200 REMARK 3 T13: -0.0647 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 1.7031 L22: 0.7273 REMARK 3 L33: 1.6911 L12: -0.5523 REMARK 3 L13: -0.6130 L23: 0.8879 REMARK 3 S TENSOR REMARK 3 S11: -0.1708 S12: -0.2950 S13: -0.6727 REMARK 3 S21: -0.4803 S22: 0.1803 S23: -0.3267 REMARK 3 S31: 0.7987 S32: 0.5717 S33: 0.0250 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 146:175) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1033 -11.7149 4.3446 REMARK 3 T TENSOR REMARK 3 T11: 0.9858 T22: 0.6427 REMARK 3 T33: 0.8889 T12: 0.3002 REMARK 3 T13: -0.0744 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 0.3877 L22: 0.3367 REMARK 3 L33: 1.3779 L12: -0.4139 REMARK 3 L13: -0.1763 L23: -0.0127 REMARK 3 S TENSOR REMARK 3 S11: -0.0640 S12: 0.1200 S13: -0.3374 REMARK 3 S21: -0.0598 S22: -0.2775 S23: -1.1491 REMARK 3 S31: 0.5053 S32: 1.7806 S33: -0.0068 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 176:253) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7699 -6.9623 -12.0383 REMARK 3 T TENSOR REMARK 3 T11: 0.9235 T22: 0.4192 REMARK 3 T33: 0.5560 T12: 0.0796 REMARK 3 T13: 0.0203 T23: -0.1632 REMARK 3 L TENSOR REMARK 3 L11: 2.0597 L22: 0.7881 REMARK 3 L33: 0.1926 L12: 0.1925 REMARK 3 L13: 0.2479 L23: -0.1413 REMARK 3 S TENSOR REMARK 3 S11: -0.1281 S12: 0.8208 S13: -0.2015 REMARK 3 S21: -0.5251 S22: 0.2430 S23: -0.0116 REMARK 3 S31: 0.8193 S32: 0.5857 S33: 0.0212 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 254:276) REMARK 3 ORIGIN FOR THE GROUP (A): -20.5238 -1.4812 -2.4115 REMARK 3 T TENSOR REMARK 3 T11: 0.7697 T22: 0.3153 REMARK 3 T33: 0.5375 T12: -0.0503 REMARK 3 T13: -0.0312 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 1.2912 L22: 0.5704 REMARK 3 L33: 0.3832 L12: -0.4640 REMARK 3 L13: 0.2170 L23: 0.2852 REMARK 3 S TENSOR REMARK 3 S11: 0.1539 S12: -0.7205 S13: -0.4848 REMARK 3 S21: -0.0265 S22: 0.1460 S23: -0.8356 REMARK 3 S31: 0.8174 S32: -0.0251 S33: -0.0367 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 277:349) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2296 8.8311 -7.6296 REMARK 3 T TENSOR REMARK 3 T11: 0.4237 T22: 0.2265 REMARK 3 T33: 0.4492 T12: 0.0644 REMARK 3 T13: -0.0460 T23: -0.0518 REMARK 3 L TENSOR REMARK 3 L11: 2.2016 L22: 1.5379 REMARK 3 L33: 3.2955 L12: 0.7523 REMARK 3 L13: 0.3140 L23: 0.2911 REMARK 3 S TENSOR REMARK 3 S11: -0.3795 S12: 0.6154 S13: -0.4577 REMARK 3 S21: -0.2132 S22: 0.2392 S23: -0.1473 REMARK 3 S31: 0.6978 S32: -0.0996 S33: -0.0108 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 350:369) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6795 13.3805 2.0431 REMARK 3 T TENSOR REMARK 3 T11: 0.6481 T22: 0.6507 REMARK 3 T33: 0.6025 T12: 0.1203 REMARK 3 T13: -0.1103 T23: 0.0941 REMARK 3 L TENSOR REMARK 3 L11: 0.3027 L22: 0.2786 REMARK 3 L33: 0.2527 L12: -0.1953 REMARK 3 L13: 0.2372 L23: 0.0839 REMARK 3 S TENSOR REMARK 3 S11: -0.1007 S12: -0.4443 S13: 0.0474 REMARK 3 S21: 0.6672 S22: 0.7160 S23: -0.3634 REMARK 3 S31: 0.9411 S32: 0.2680 S33: -0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 370:396) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8242 19.8795 -7.6435 REMARK 3 T TENSOR REMARK 3 T11: 0.3810 T22: 0.4433 REMARK 3 T33: 0.5834 T12: -0.0067 REMARK 3 T13: -0.0090 T23: -0.0482 REMARK 3 L TENSOR REMARK 3 L11: 0.6132 L22: 0.8189 REMARK 3 L33: 0.5774 L12: 0.7240 REMARK 3 L13: 0.1458 L23: -0.0583 REMARK 3 S TENSOR REMARK 3 S11: -0.4643 S12: 0.1762 S13: 0.1755 REMARK 3 S21: -0.5482 S22: 0.4100 S23: -0.3659 REMARK 3 S31: 0.0412 S32: -0.6558 S33: 0.0062 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 3:27) REMARK 3 ORIGIN FOR THE GROUP (A): -37.6103 -2.9817 -0.5479 REMARK 3 T TENSOR REMARK 3 T11: 0.9399 T22: 1.3814 REMARK 3 T33: 0.7717 T12: -0.5294 REMARK 3 T13: -0.1247 T23: -0.2369 REMARK 3 L TENSOR REMARK 3 L11: 0.3649 L22: 0.2097 REMARK 3 L33: 1.3385 L12: 0.0006 REMARK 3 L13: -0.4527 L23: 0.4748 REMARK 3 S TENSOR REMARK 3 S11: -0.8235 S12: 1.4547 S13: -1.2021 REMARK 3 S21: -0.4800 S22: -0.1180 S23: -0.0825 REMARK 3 S31: 0.4897 S32: 1.3987 S33: -0.1642 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 28:83) REMARK 3 ORIGIN FOR THE GROUP (A): -29.1054 10.9337 13.9788 REMARK 3 T TENSOR REMARK 3 T11: 0.3715 T22: 0.7052 REMARK 3 T33: 0.4844 T12: -0.1203 REMARK 3 T13: -0.0355 T23: 0.0508 REMARK 3 L TENSOR REMARK 3 L11: 0.8836 L22: 1.5258 REMARK 3 L33: 1.9763 L12: 0.2519 REMARK 3 L13: -0.2153 L23: 0.2562 REMARK 3 S TENSOR REMARK 3 S11: -0.0847 S12: -0.1108 S13: 0.1741 REMARK 3 S21: -0.0111 S22: 0.1516 S23: 0.2224 REMARK 3 S31: 0.1355 S32: -0.3748 S33: 0.0024 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 84:145) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7768 -5.7679 21.0914 REMARK 3 T TENSOR REMARK 3 T11: 0.6279 T22: 0.4726 REMARK 3 T33: 0.4052 T12: -0.0205 REMARK 3 T13: -0.1400 T23: 0.2713 REMARK 3 L TENSOR REMARK 3 L11: 1.9236 L22: 0.8057 REMARK 3 L33: 1.1306 L12: 0.3621 REMARK 3 L13: -0.3393 L23: 0.0453 REMARK 3 S TENSOR REMARK 3 S11: -0.3271 S12: -0.6804 S13: -0.0153 REMARK 3 S21: -0.1005 S22: 0.5618 S23: -0.0727 REMARK 3 S31: 0.4233 S32: -0.0446 S33: 0.1883 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 146:175) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4738 -19.2390 14.6926 REMARK 3 T TENSOR REMARK 3 T11: 1.0605 T22: 0.5549 REMARK 3 T33: 0.9557 T12: -0.1407 REMARK 3 T13: -0.1023 T23: 0.3659 REMARK 3 L TENSOR REMARK 3 L11: 1.1596 L22: 0.0187 REMARK 3 L33: 1.5178 L12: 0.1466 REMARK 3 L13: 0.3889 L23: -0.1264 REMARK 3 S TENSOR REMARK 3 S11: -0.2908 S12: -0.7142 S13: -1.2036 REMARK 3 S21: 0.3920 S22: 0.2452 S23: 0.4625 REMARK 3 S31: 1.0306 S32: -0.7754 S33: -0.0645 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 176:276) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9914 -7.6950 28.3786 REMARK 3 T TENSOR REMARK 3 T11: 0.8676 T22: 0.8318 REMARK 3 T33: 0.5862 T12: -0.0098 REMARK 3 T13: -0.0984 T23: 0.3077 REMARK 3 L TENSOR REMARK 3 L11: 0.8186 L22: 0.8372 REMARK 3 L33: 0.8230 L12: 0.8511 REMARK 3 L13: -0.2856 L23: 0.3495 REMARK 3 S TENSOR REMARK 3 S11: -0.0952 S12: -0.5525 S13: -0.3263 REMARK 3 S21: 0.5095 S22: 0.0364 S23: -0.2003 REMARK 3 S31: 0.6466 S32: -0.1406 S33: -0.2782 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 277:307) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2005 8.7677 18.8089 REMARK 3 T TENSOR REMARK 3 T11: 0.4115 T22: 0.6738 REMARK 3 T33: 0.4060 T12: -0.0153 REMARK 3 T13: -0.1143 T23: 0.1027 REMARK 3 L TENSOR REMARK 3 L11: 0.3456 L22: 1.1341 REMARK 3 L33: 0.6572 L12: 0.5640 REMARK 3 L13: -0.3191 L23: -0.8237 REMARK 3 S TENSOR REMARK 3 S11: 0.2401 S12: -0.9851 S13: 0.1286 REMARK 3 S21: -0.0596 S22: -0.1968 S23: -0.3877 REMARK 3 S31: 0.1974 S32: 1.2223 S33: 0.0019 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 308:396) REMARK 3 ORIGIN FOR THE GROUP (A): -43.1663 -5.3429 25.7049 REMARK 3 T TENSOR REMARK 3 T11: 0.6995 T22: 1.0822 REMARK 3 T33: 0.7699 T12: -0.4542 REMARK 3 T13: 0.0125 T23: 0.3530 REMARK 3 L TENSOR REMARK 3 L11: 0.8583 L22: 1.8791 REMARK 3 L33: 1.6065 L12: -0.8421 REMARK 3 L13: 0.0231 L23: -0.7704 REMARK 3 S TENSOR REMARK 3 S11: 0.2704 S12: -0.7163 S13: -0.2212 REMARK 3 S21: 0.2280 S22: -0.0726 S23: 0.8197 REMARK 3 S31: 0.2828 S32: -1.1333 S33: 0.1469 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RUY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065408. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : C(111) DIAMOND LAUE REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : BERYLLIUM LENS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25718 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.57800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 12.5MM SUBERIC ACID, REMARK 280 12.5MM SEBACIC ACID, 12.5MM HEXADECANEDIOIC ACID, 12.5MM REMARK 280 DODECANEDIOIC ACID, 40% ETHANOL, 100MM HEPES, PH 8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.06000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.39150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.14550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.39150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.06000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.14550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 VAL A 127 CG1 CG2 REMARK 470 ARG A 131 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 218 CG CD CE NZ REMARK 470 LYS B 93 CG CD CE NZ REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 VAL B 127 CG1 CG2 REMARK 470 ARG B 131 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 218 CG CD CE NZ REMARK 470 ASN B 369 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 23 7.14 -69.26 REMARK 500 SER A 50 39.28 75.13 REMARK 500 VAL A 52 51.54 -103.91 REMARK 500 ARG A 71 -75.59 -120.68 REMARK 500 LLP A 255 -91.26 43.52 REMARK 500 GLU A 368 -53.36 72.98 REMARK 500 ALA A 374 77.43 -156.38 REMARK 500 PRO B 23 10.32 -64.19 REMARK 500 SER B 50 15.41 85.64 REMARK 500 VAL B 52 55.93 -103.36 REMARK 500 ARG B 71 -69.92 -120.98 REMARK 500 LLP B 255 -93.50 34.30 REMARK 500 GLU B 368 -56.12 74.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP02643 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 PYRIDOXAL-5-PHOSPHATE COVALENTLY BOUND TO LYSINE 255 DBREF 3RUY A 5 396 UNP Q81TV3 OAT_BACAN 5 396 DBREF 3RUY B 5 396 UNP Q81TV3 OAT_BACAN 5 396 SEQRES 1 A 392 LYS ASP ILE ILE GLU LEU THR ASP THR TYR GLY ALA ASN SEQRES 2 A 392 ASN TYR HIS PRO LEU PRO ILE VAL ILE SER LYS ALA GLU SEQRES 3 A 392 GLY VAL TRP VAL GLU ASP PRO GLU GLY ASN ARG TYR MET SEQRES 4 A 392 ASP LEU LEU SER ALA TYR SER ALA VAL ASN GLN GLY HIS SEQRES 5 A 392 ARG HIS PRO LYS ILE ILE ASN ALA LEU ILE ASP GLN ALA SEQRES 6 A 392 ASN ARG VAL THR LEU THR SER ARG ALA PHE HIS SER ASP SEQRES 7 A 392 GLN LEU GLY PRO TRP TYR GLU LYS VAL ALA LYS LEU THR SEQRES 8 A 392 ASN LYS GLU MET VAL LEU PRO MET ASN THR GLY ALA GLU SEQRES 9 A 392 ALA VAL GLU THR ALA ILE LYS THR ALA ARG ARG TRP ALA SEQRES 10 A 392 TYR ASP VAL LYS LYS VAL GLU ALA ASN ARG ALA GLU ILE SEQRES 11 A 392 ILE VAL CYS GLU ASP ASN PHE HIS GLY ARG THR MET GLY SEQRES 12 A 392 ALA VAL SER MET SER SER ASN GLU GLU TYR LYS ARG GLY SEQRES 13 A 392 PHE GLY PRO MET LEU PRO GLY ILE ILE VAL ILE PRO TYR SEQRES 14 A 392 GLY ASP LEU GLU ALA LEU LYS ALA ALA ILE THR PRO ASN SEQRES 15 A 392 THR ALA ALA PHE ILE LEU GLU PRO ILE GLN GLY GLU ALA SEQRES 16 A 392 GLY ILE ASN ILE PRO PRO ALA GLY PHE LEU LYS GLU ALA SEQRES 17 A 392 LEU GLU VAL CYS LYS LYS GLU ASN VAL LEU PHE VAL ALA SEQRES 18 A 392 ASP GLU ILE GLN THR GLY LEU GLY ARG THR GLY LYS VAL SEQRES 19 A 392 PHE ALA CYS ASP TRP ASP ASN VAL THR PRO ASP MET TYR SEQRES 20 A 392 ILE LEU GLY LLP ALA LEU GLY GLY GLY VAL PHE PRO ILE SEQRES 21 A 392 SER CYS ALA ALA ALA ASN ARG ASP ILE LEU GLY VAL PHE SEQRES 22 A 392 GLU PRO GLY SER HIS GLY SER THR PHE GLY GLY ASN PRO SEQRES 23 A 392 LEU ALA CYS ALA VAL SER ILE ALA ALA LEU GLU VAL LEU SEQRES 24 A 392 GLU GLU GLU LYS LEU THR GLU ARG SER LEU GLN LEU GLY SEQRES 25 A 392 GLU LYS LEU VAL GLY GLN LEU LYS GLU ILE ASP ASN PRO SEQRES 26 A 392 MET ILE THR GLU VAL ARG GLY LYS GLY LEU PHE ILE GLY SEQRES 27 A 392 ILE GLU LEU ASN GLU PRO ALA ARG PRO TYR CYS GLU GLN SEQRES 28 A 392 LEU LYS ALA ALA GLY LEU LEU CYS LYS GLU THR HIS GLU SEQRES 29 A 392 ASN VAL ILE ARG ILE ALA PRO PRO LEU VAL ILE SER GLU SEQRES 30 A 392 GLU ASP LEU GLU TRP ALA PHE GLN LYS ILE LYS ALA VAL SEQRES 31 A 392 LEU SER SEQRES 1 B 392 LYS ASP ILE ILE GLU LEU THR ASP THR TYR GLY ALA ASN SEQRES 2 B 392 ASN TYR HIS PRO LEU PRO ILE VAL ILE SER LYS ALA GLU SEQRES 3 B 392 GLY VAL TRP VAL GLU ASP PRO GLU GLY ASN ARG TYR MET SEQRES 4 B 392 ASP LEU LEU SER ALA TYR SER ALA VAL ASN GLN GLY HIS SEQRES 5 B 392 ARG HIS PRO LYS ILE ILE ASN ALA LEU ILE ASP GLN ALA SEQRES 6 B 392 ASN ARG VAL THR LEU THR SER ARG ALA PHE HIS SER ASP SEQRES 7 B 392 GLN LEU GLY PRO TRP TYR GLU LYS VAL ALA LYS LEU THR SEQRES 8 B 392 ASN LYS GLU MET VAL LEU PRO MET ASN THR GLY ALA GLU SEQRES 9 B 392 ALA VAL GLU THR ALA ILE LYS THR ALA ARG ARG TRP ALA SEQRES 10 B 392 TYR ASP VAL LYS LYS VAL GLU ALA ASN ARG ALA GLU ILE SEQRES 11 B 392 ILE VAL CYS GLU ASP ASN PHE HIS GLY ARG THR MET GLY SEQRES 12 B 392 ALA VAL SER MET SER SER ASN GLU GLU TYR LYS ARG GLY SEQRES 13 B 392 PHE GLY PRO MET LEU PRO GLY ILE ILE VAL ILE PRO TYR SEQRES 14 B 392 GLY ASP LEU GLU ALA LEU LYS ALA ALA ILE THR PRO ASN SEQRES 15 B 392 THR ALA ALA PHE ILE LEU GLU PRO ILE GLN GLY GLU ALA SEQRES 16 B 392 GLY ILE ASN ILE PRO PRO ALA GLY PHE LEU LYS GLU ALA SEQRES 17 B 392 LEU GLU VAL CYS LYS LYS GLU ASN VAL LEU PHE VAL ALA SEQRES 18 B 392 ASP GLU ILE GLN THR GLY LEU GLY ARG THR GLY LYS VAL SEQRES 19 B 392 PHE ALA CYS ASP TRP ASP ASN VAL THR PRO ASP MET TYR SEQRES 20 B 392 ILE LEU GLY LLP ALA LEU GLY GLY GLY VAL PHE PRO ILE SEQRES 21 B 392 SER CYS ALA ALA ALA ASN ARG ASP ILE LEU GLY VAL PHE SEQRES 22 B 392 GLU PRO GLY SER HIS GLY SER THR PHE GLY GLY ASN PRO SEQRES 23 B 392 LEU ALA CYS ALA VAL SER ILE ALA ALA LEU GLU VAL LEU SEQRES 24 B 392 GLU GLU GLU LYS LEU THR GLU ARG SER LEU GLN LEU GLY SEQRES 25 B 392 GLU LYS LEU VAL GLY GLN LEU LYS GLU ILE ASP ASN PRO SEQRES 26 B 392 MET ILE THR GLU VAL ARG GLY LYS GLY LEU PHE ILE GLY SEQRES 27 B 392 ILE GLU LEU ASN GLU PRO ALA ARG PRO TYR CYS GLU GLN SEQRES 28 B 392 LEU LYS ALA ALA GLY LEU LEU CYS LYS GLU THR HIS GLU SEQRES 29 B 392 ASN VAL ILE ARG ILE ALA PRO PRO LEU VAL ILE SER GLU SEQRES 30 B 392 GLU ASP LEU GLU TRP ALA PHE GLN LYS ILE LYS ALA VAL SEQRES 31 B 392 LEU SER MODRES 3RUY LLP A 255 LYS MODRES 3RUY LLP B 255 LYS HET LLP A 255 24 HET LLP B 255 24 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 HOH *84(H2 O) HELIX 1 1 ASP A 6 GLY A 15 1 10 HELIX 2 2 LEU A 46 ALA A 51 1 6 HELIX 3 3 HIS A 58 ASN A 70 1 13 HELIX 4 4 GLN A 83 ASN A 96 1 14 HELIX 5 5 THR A 105 VAL A 124 1 20 HELIX 6 6 THR A 145 MET A 151 1 7 HELIX 7 7 ASP A 175 ILE A 183 1 9 HELIX 8 8 GLY A 207 LYS A 218 1 12 HELIX 9 9 PHE A 239 ASN A 245 5 7 HELIX 10 10 GLY A 254 GLY A 259 5 6 HELIX 11 11 ASN A 270 GLY A 275 1 6 HELIX 12 12 ASN A 289 GLU A 306 1 18 HELIX 13 13 LYS A 307 LYS A 324 1 18 HELIX 14 14 ALA A 349 ALA A 358 1 10 HELIX 15 15 SER A 380 SER A 396 1 17 HELIX 16 16 ASP B 6 GLY B 15 1 10 HELIX 17 17 LEU B 46 ALA B 51 1 6 HELIX 18 18 HIS B 58 ALA B 69 1 12 HELIX 19 19 GLN B 83 ASN B 96 1 14 HELIX 20 20 THR B 105 VAL B 124 1 20 HELIX 21 21 THR B 145 SER B 150 1 6 HELIX 22 22 ASP B 175 ILE B 183 1 9 HELIX 23 23 GLY B 207 GLU B 219 1 13 HELIX 24 24 PHE B 239 ASN B 245 5 7 HELIX 25 25 GLY B 254 GLY B 259 5 6 HELIX 26 26 ASN B 270 GLY B 275 1 6 HELIX 27 27 ASN B 289 GLU B 306 1 18 HELIX 28 28 LYS B 307 LYS B 324 1 18 HELIX 29 29 ALA B 349 GLY B 360 1 12 HELIX 30 30 SER B 380 SER B 396 1 17 SHEET 1 A 2 VAL A 25 ILE A 26 0 SHEET 2 A 2 HIS B 80 SER B 81 1 O HIS B 80 N ILE A 26 SHEET 1 B 4 LYS A 28 GLU A 30 0 SHEET 2 B 4 TRP A 33 GLU A 35 -1 O TRP A 33 N GLU A 30 SHEET 3 B 4 ARG A 41 ASP A 44 -1 O TYR A 42 N VAL A 34 SHEET 4 B 4 LEU A 361 LEU A 362 1 O LEU A 362 N MET A 43 SHEET 1 C 2 HIS A 80 SER A 81 0 SHEET 2 C 2 VAL B 25 ILE B 26 1 O ILE B 26 N HIS A 80 SHEET 1 D 7 MET A 99 MET A 103 0 SHEET 2 D 7 SER A 265 ALA A 269 -1 O ALA A 269 N MET A 99 SHEET 3 D 7 MET A 250 LEU A 253 -1 N LEU A 253 O CYS A 266 SHEET 4 D 7 LEU A 222 ASP A 226 1 N ALA A 225 O MET A 250 SHEET 5 D 7 THR A 187 LEU A 192 1 N LEU A 192 O ASP A 226 SHEET 6 D 7 GLU A 133 CYS A 137 1 N GLU A 133 O ALA A 188 SHEET 7 D 7 ILE A 168 ILE A 171 1 O ILE A 169 N ILE A 134 SHEET 1 E 3 ILE A 331 LYS A 337 0 SHEET 2 E 3 PHE A 340 LEU A 345 -1 O GLY A 342 N ARG A 335 SHEET 3 E 3 VAL A 370 ILE A 373 -1 O ILE A 373 N ILE A 341 SHEET 1 F 4 LYS B 28 GLU B 30 0 SHEET 2 F 4 TRP B 33 GLU B 35 -1 O GLU B 35 N LYS B 28 SHEET 3 F 4 ARG B 41 ASP B 44 -1 O TYR B 42 N VAL B 34 SHEET 4 F 4 LEU B 361 LEU B 362 1 O LEU B 362 N MET B 43 SHEET 1 G 7 MET B 99 MET B 103 0 SHEET 2 G 7 SER B 265 ALA B 269 -1 O ALA B 269 N MET B 99 SHEET 3 G 7 MET B 250 LEU B 253 -1 N TYR B 251 O ALA B 268 SHEET 4 G 7 LEU B 222 ASP B 226 1 N ALA B 225 O MET B 250 SHEET 5 G 7 THR B 187 LEU B 192 1 N LEU B 192 O ASP B 226 SHEET 6 G 7 GLU B 133 CYS B 137 1 N GLU B 133 O ALA B 188 SHEET 7 G 7 ILE B 168 ILE B 171 1 O ILE B 169 N VAL B 136 SHEET 1 H 4 ILE B 331 LYS B 337 0 SHEET 2 H 4 PHE B 340 LEU B 345 -1 O GLY B 342 N ARG B 335 SHEET 3 H 4 VAL B 370 ILE B 373 -1 O ILE B 373 N ILE B 341 SHEET 4 H 4 GLU B 365 THR B 366 -1 N THR B 366 O VAL B 370 LINK C LLP A 255 N ALA A 256 1555 1555 1.33 LINK C LLP B 255 N ALA B 256 1555 1555 1.33 CRYST1 70.120 98.291 126.783 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014261 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010174 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007887 0.00000