HEADER LIGASE 05-MAY-11 3RV4 TITLE CRYSTAL STRUCTURE OF E.COLI BIOTIN CARBOXYLASE R16E MUTANT IN COMPLEX TITLE 2 WITH MG-ADP AND BICARBONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIOTIN CARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACETYL-COA CARBOXYLASE SUBUNIT A, ACC; COMPND 5 EC: 6.3.4.14, 6.4.1.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: ACCC, FABG, B3256, JW3224; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR C.Y.CHOU,L.TONG REVDAT 5 28-FEB-24 3RV4 1 REMARK SEQADV LINK REVDAT 4 25-OCT-17 3RV4 1 REMARK REVDAT 3 20-JUL-11 3RV4 1 JRNL REVDAT 2 01-JUN-11 3RV4 1 JRNL REVDAT 1 18-MAY-11 3RV4 0 JRNL AUTH C.Y.CHOU,L.TONG JRNL TITL STRUCTURAL AND BIOCHEMICAL STUDIES ON THE REGULATION OF JRNL TITL 2 BIOTIN CARBOXYLASE BY SUBSTRATE INHIBITION AND DIMERIZATION. JRNL REF J.BIOL.CHEM. V. 286 24417 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21592965 JRNL DOI 10.1074/JBC.M111.220517 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 29337 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1473 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3853 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 183 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3431 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 365 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.47000 REMARK 3 B22 (A**2) : -0.33000 REMARK 3 B33 (A**2) : 0.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.72000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.173 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3532 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4769 ; 1.226 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 445 ; 5.224 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 157 ;34.723 ;23.758 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 612 ;13.950 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;15.943 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 523 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2667 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1725 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2417 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 309 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.403 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.211 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.158 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2210 ; 0.558 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3542 ; 1.073 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1322 ; 1.866 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1227 ; 3.194 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3RV4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065414. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29337 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.36200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, CSCL, METHANOL, PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.70200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.58550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.70200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.58550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT SOLUTION LIGHT SCATTERING AND AUC REMARK 300 EXPERIMENTS INDICATED THE PROTEIN IS DIMERIC. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -209.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1C REMARK 465 SER A 1B REMARK 465 HIS A 1A REMARK 465 GLN A 447 REMARK 465 GLU A 448 REMARK 465 LYS A 449 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 18 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 59 -83.76 -130.29 REMARK 500 PHE A 84 -130.95 47.51 REMARK 500 ASP A 141 92.84 -67.46 REMARK 500 ASN A 206 49.23 -141.49 REMARK 500 LEU A 225 71.29 -110.86 REMARK 500 ALA A 226 -154.69 52.93 REMARK 500 ARG A 292 167.89 178.19 REMARK 500 TYR A 381 -132.53 -115.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A1008 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 113 O REMARK 620 2 GLU A 288 OE1 129.1 REMARK 620 3 MET A 289 O 84.1 90.5 REMARK 620 4 HOH A 463 O 46.5 84.4 69.2 REMARK 620 5 HOH A 596 O 156.3 62.7 74.6 130.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1004 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 276 OE1 REMARK 620 2 GLU A 288 OE2 87.4 REMARK 620 3 HOH A 551 O 89.7 171.1 REMARK 620 4 HOH A 673 O 90.1 80.1 91.6 REMARK 620 5 ADP A1000 O2A 100.3 90.5 98.3 165.7 REMARK 620 6 ADP A1000 O3B 176.6 89.6 93.1 87.8 81.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 450 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 378 O REMARK 620 2 ASP A 382 O 133.4 REMARK 620 3 HOH A 662 O 90.2 88.0 REMARK 620 4 HOH A 671 O 64.4 77.8 122.7 REMARK 620 5 HOH A 679 O 104.2 113.0 128.6 107.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1012 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 407 O REMARK 620 2 HOH A 470 O 79.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCT A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CS A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1012 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1014 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 451 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RUP RELATED DB: PDB REMARK 900 RELATED ID: 3RV3 RELATED DB: PDB DBREF 3RV4 A 1 449 UNP P24182 ACCC_ECOLI 1 449 SEQADV 3RV4 GLY A 1C UNP P24182 EXPRESSION TAG SEQADV 3RV4 SER A 1B UNP P24182 EXPRESSION TAG SEQADV 3RV4 HIS A 1A UNP P24182 EXPRESSION TAG SEQADV 3RV4 GLU A 16 UNP P24182 ARG 16 ENGINEERED MUTATION SEQRES 1 A 452 GLY SER HIS MET LEU ASP LYS ILE VAL ILE ALA ASN ARG SEQRES 2 A 452 GLY GLU ILE ALA LEU GLU ILE LEU ARG ALA CYS LYS GLU SEQRES 3 A 452 LEU GLY ILE LYS THR VAL ALA VAL HIS SER SER ALA ASP SEQRES 4 A 452 ARG ASP LEU LYS HIS VAL LEU LEU ALA ASP GLU THR VAL SEQRES 5 A 452 CYS ILE GLY PRO ALA PRO SER VAL LYS SER TYR LEU ASN SEQRES 6 A 452 ILE PRO ALA ILE ILE SER ALA ALA GLU ILE THR GLY ALA SEQRES 7 A 452 VAL ALA ILE HIS PRO GLY TYR GLY PHE LEU SER GLU ASN SEQRES 8 A 452 ALA ASN PHE ALA GLU GLN VAL GLU ARG SER GLY PHE ILE SEQRES 9 A 452 PHE ILE GLY PRO LYS ALA GLU THR ILE ARG LEU MET GLY SEQRES 10 A 452 ASP LYS VAL SER ALA ILE ALA ALA MET LYS LYS ALA GLY SEQRES 11 A 452 VAL PRO CYS VAL PRO GLY SER ASP GLY PRO LEU GLY ASP SEQRES 12 A 452 ASP MET ASP LYS ASN ARG ALA ILE ALA LYS ARG ILE GLY SEQRES 13 A 452 TYR PRO VAL ILE ILE LYS ALA SER GLY GLY GLY GLY GLY SEQRES 14 A 452 ARG GLY MET ARG VAL VAL ARG GLY ASP ALA GLU LEU ALA SEQRES 15 A 452 GLN SER ILE SER MET THR ARG ALA GLU ALA LYS ALA ALA SEQRES 16 A 452 PHE SER ASN ASP MET VAL TYR MET GLU LYS TYR LEU GLU SEQRES 17 A 452 ASN PRO ARG HIS VAL GLU ILE GLN VAL LEU ALA ASP GLY SEQRES 18 A 452 GLN GLY ASN ALA ILE TYR LEU ALA GLU ARG ASP CYS SER SEQRES 19 A 452 MET GLN ARG ARG HIS GLN LYS VAL VAL GLU GLU ALA PRO SEQRES 20 A 452 ALA PRO GLY ILE THR PRO GLU LEU ARG ARG TYR ILE GLY SEQRES 21 A 452 GLU ARG CYS ALA LYS ALA CYS VAL ASP ILE GLY TYR ARG SEQRES 22 A 452 GLY ALA GLY THR PHE GLU PHE LEU PHE GLU ASN GLY GLU SEQRES 23 A 452 PHE TYR PHE ILE GLU MET ASN THR ARG ILE GLN VAL GLU SEQRES 24 A 452 HIS PRO VAL THR GLU MET ILE THR GLY VAL ASP LEU ILE SEQRES 25 A 452 LYS GLU GLN LEU ARG ILE ALA ALA GLY GLN PRO LEU SER SEQRES 26 A 452 ILE LYS GLN GLU GLU VAL HIS VAL ARG GLY HIS ALA VAL SEQRES 27 A 452 GLU CYS ARG ILE ASN ALA GLU ASP PRO ASN THR PHE LEU SEQRES 28 A 452 PRO SER PRO GLY LYS ILE THR ARG PHE HIS ALA PRO GLY SEQRES 29 A 452 GLY PHE GLY VAL ARG TRP GLU SER HIS ILE TYR ALA GLY SEQRES 30 A 452 TYR THR VAL PRO PRO TYR TYR ASP SER MET ILE GLY LYS SEQRES 31 A 452 LEU ILE CYS TYR GLY GLU ASN ARG ASP VAL ALA ILE ALA SEQRES 32 A 452 ARG MET LYS ASN ALA LEU GLN GLU LEU ILE ILE ASP GLY SEQRES 33 A 452 ILE LYS THR ASN VAL ASP LEU GLN ILE ARG ILE MET ASN SEQRES 34 A 452 ASP GLU ASN PHE GLN HIS GLY GLY THR ASN ILE HIS TYR SEQRES 35 A 452 LEU GLU LYS LYS LEU GLY LEU GLN GLU LYS HET ADP A1000 27 HET MG A1004 1 HET BCT A1006 4 HET CS A1008 1 HET CL A1010 1 HET NA A1012 1 HET GOL A1014 6 HET MOH A1016 2 HET NA A 450 1 HET CL A 451 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM BCT BICARBONATE ION HETNAM CS CESIUM ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETNAM MOH METHANOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG MG 2+ FORMUL 4 BCT C H O3 1- FORMUL 5 CS CS 1+ FORMUL 6 CL 2(CL 1-) FORMUL 7 NA 2(NA 1+) FORMUL 8 GOL C3 H8 O3 FORMUL 9 MOH C H4 O FORMUL 12 HOH *365(H2 O) HELIX 1 1 ARG A 10 GLY A 25 1 16 HELIX 2 2 ALA A 35 ARG A 37 5 3 HELIX 3 3 LEU A 39 ALA A 45 1 7 HELIX 4 4 PRO A 55 SER A 59 5 5 HELIX 5 5 ASN A 62 GLY A 74 1 13 HELIX 6 6 ASN A 88 SER A 98 1 11 HELIX 7 7 LYS A 106 ASP A 115 1 10 HELIX 8 8 ASP A 115 GLY A 127 1 13 HELIX 9 9 ASP A 141 GLY A 153 1 13 HELIX 10 10 GLY A 174 SER A 194 1 21 HELIX 11 11 THR A 249 GLY A 268 1 20 HELIX 12 12 GLU A 296 GLY A 305 1 10 HELIX 13 13 ASP A 307 ALA A 317 1 11 HELIX 14 14 LYS A 324 VAL A 328 5 5 HELIX 15 15 ASN A 394 LEU A 409 1 16 HELIX 16 16 ASN A 417 ASN A 426 1 10 HELIX 17 17 ASP A 427 GLY A 433 1 7 HELIX 18 18 HIS A 438 GLY A 445 1 8 SHEET 1 A 5 GLU A 47 GLY A 52 0 SHEET 2 A 5 LYS A 27 SER A 33 1 N ALA A 30 O VAL A 49 SHEET 3 A 5 LYS A 4 ILE A 7 1 N ILE A 7 O VAL A 29 SHEET 4 A 5 ALA A 77 HIS A 79 1 O HIS A 79 N VAL A 6 SHEET 5 A 5 ILE A 101 PHE A 102 1 O ILE A 101 N ILE A 78 SHEET 1 B 3 MET A 169 VAL A 172 0 SHEET 2 B 3 VAL A 156 ALA A 160 -1 N VAL A 156 O VAL A 172 SHEET 3 B 3 VAL A 198 LYS A 202 -1 O GLU A 201 N ILE A 157 SHEET 1 C 8 GLU A 283 ASN A 290 0 SHEET 2 C 8 ARG A 270 GLU A 280 -1 N GLU A 276 O GLU A 288 SHEET 3 C 8 ARG A 208 ASP A 217 -1 N ALA A 216 O GLY A 271 SHEET 4 C 8 ALA A 222 ARG A 234 -1 O LEU A 225 N GLN A 213 SHEET 5 C 8 GLN A 237 ALA A 243 -1 O VAL A 239 N MET A 232 SHEET 6 C 8 HIS A 333 ASN A 340 -1 O GLU A 336 N GLU A 241 SHEET 7 C 8 MET A 384 GLY A 392 -1 O ILE A 385 N ILE A 339 SHEET 8 C 8 VAL A 365 GLU A 368 -1 N ARG A 366 O ILE A 389 SHEET 1 D 2 GLY A 352 LYS A 353 0 SHEET 2 D 2 THR A 376 VAL A 377 -1 O VAL A 377 N GLY A 352 SHEET 1 E 2 ARG A 356 HIS A 358 0 SHEET 2 E 2 ILE A 410 ASP A 412 -1 O ILE A 410 N HIS A 358 LINK O MET A 113 CS CS A1008 1555 1555 3.33 LINK OE1 GLU A 276 MG MG A1004 1555 1555 2.10 LINK OE2 GLU A 288 MG MG A1004 1555 1555 1.98 LINK OE1 GLU A 288 CS CS A1008 1555 1555 3.06 LINK O MET A 289 CS CS A1008 1555 1555 3.09 LINK O PRO A 378 NA NA A 450 1555 1555 3.02 LINK O ASP A 382 NA NA A 450 1555 1555 2.64 LINK O GLN A 407 NA NA A1012 1555 1555 3.15 LINK NA NA A 450 O HOH A 662 1555 1555 3.17 LINK NA NA A 450 O HOH A 671 1555 1555 2.08 LINK NA NA A 450 O HOH A 679 1555 1555 3.19 LINK O HOH A 463 CS CS A1008 1555 1555 3.43 LINK O HOH A 470 NA NA A1012 1555 1555 3.09 LINK O HOH A 551 MG MG A1004 1555 1555 2.07 LINK O HOH A 596 CS CS A1008 1555 1555 2.84 LINK O HOH A 673 MG MG A1004 1555 1555 2.22 LINK O2A ADP A1000 MG MG A1004 1555 1555 2.00 LINK O3B ADP A1000 MG MG A1004 1555 1555 2.35 CISPEP 1 TYR A 154 PRO A 155 0 -2.69 CISPEP 2 ALA A 243 PRO A 244 0 -7.03 SITE 1 AC1 23 LYS A 116 ILE A 157 LYS A 159 GLY A 164 SITE 2 AC1 23 GLY A 165 GLY A 166 MET A 169 GLU A 201 SITE 3 AC1 23 LYS A 202 TYR A 203 LEU A 204 HIS A 209 SITE 4 AC1 23 GLN A 233 HIS A 236 GLU A 276 LEU A 278 SITE 5 AC1 23 ILE A 287 GLU A 288 ILE A 437 HOH A 551 SITE 6 AC1 23 HOH A 813 MG A1004 GOL A1014 SITE 1 AC2 5 GLU A 276 GLU A 288 HOH A 551 HOH A 673 SITE 2 AC2 5 ADP A1000 SITE 1 AC3 7 LYS A 238 ARG A 292 GLN A 294 VAL A 295 SITE 2 AC3 7 GLU A 296 ARG A 338 HOH A 536 SITE 1 AC4 5 MET A 113 GLU A 288 MET A 289 HOH A 547 SITE 2 AC4 5 HOH A 596 SITE 1 AC5 4 ASN A 345 PHE A 347 ASN A 429 GLY A 433 SITE 1 AC6 3 GLN A 407 LEU A 409 HOH A 470 SITE 1 AC7 9 TYR A 203 GLN A 233 ARG A 235 HIS A 236 SITE 2 AC7 9 ILE A 437 HIS A 438 GLU A 441 HOH A 707 SITE 3 AC7 9 ADP A1000 SITE 1 AC8 4 VAL A 377 PRO A 378 ASP A 382 HOH A 671 SITE 1 AC9 5 HIS A 79 GLY A 81 ILE A 293 GLN A 312 SITE 2 AC9 5 HOH A 478 CRYST1 119.404 51.171 84.156 90.00 119.75 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008375 0.000000 0.004788 0.00000 SCALE2 0.000000 0.019542 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013687 0.00000