HEADER ISOMERASE/ISOMERASE INHIBITOR 06-MAY-11 3RV6 TITLE STRUCTURE OF A M. TUBERCULOSIS SALICYLATE SYNTHASE, MBTI, IN COMPLEX TITLE 2 WITH AN INHIBITOR WITH PHENYL R-GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOCHORISMATE SYNTHASE/ISOCHORISMATE-PYRUVATE LYASE MBTI; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MYCOBACTIN SYNTHASE PROTEIN I, SALICYLATE SYNTHASE MBTI; COMPND 5 EC: 4.1.3.-, 5.4.4.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV2386C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21:DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET42A KEYWDS STRUCTURAL GENOMICS, TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, KEYWDS 2 SALICYLATE SYNTHASE, CHORISMATE BINDING, ISOMERASE-ISOMERASE KEYWDS 3 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.CHI,E.M.M.BULLOCH,A.MANOS-TURVEY,R.J.PAYNE,J.S.LOTT,TB STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (TBSGC) REVDAT 5 20-MAR-24 3RV6 1 REMARK SEQADV LINK REVDAT 4 19-JUN-13 3RV6 1 JRNL REVDAT 3 13-JUN-12 3RV6 1 JRNL REVDAT 2 30-MAY-12 3RV6 1 HETATM REVDAT 1 09-MAY-12 3RV6 0 JRNL AUTH G.CHI,A.MANOS-TURVEY,P.D.O'CONNOR,J.M.JOHNSTON,G.L.EVANS, JRNL AUTH 2 E.N.BAKER,R.J.PAYNE,J.S.LOTT,E.M.BULLOCH JRNL TITL IMPLICATIONS OF BINDING MODE AND ACTIVE SITE FLEXIBILITY FOR JRNL TITL 2 INHIBITOR POTENCY AGAINST THE SALICYLATE SYNTHASE FROM JRNL TITL 3 MYCOBACTERIUM TUBERCULOSIS JRNL REF BIOCHEMISTRY V. 51 4868 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22607697 JRNL DOI 10.1021/BI3002067 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 54526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2762 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.09 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3682 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2357 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3505 REMARK 3 BIN R VALUE (WORKING SET) : 0.2337 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.81 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 177 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6260 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 117 REMARK 3 SOLVENT ATOMS : 618 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52970 REMARK 3 B22 (A**2) : -0.60140 REMARK 3 B33 (A**2) : 1.13100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.19130 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.212 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6521 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8866 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2189 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 170 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1010 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6521 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 849 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8055 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.09 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.47 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.64 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RV6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065416. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54595 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 51.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.3M MAGNESIUM SULPHATE, 0.13M 2-(N REMARK 280 -MORPHOLINO)ETHANESULFONIC ACID, PH 6.3, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.76500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 LEU A 4 REMARK 465 SER A 5 REMARK 465 VAL A 6 REMARK 465 ALA A 7 REMARK 465 THR A 8 REMARK 465 GLY A 9 REMARK 465 ALA A 10 REMARK 465 VAL A 11 REMARK 465 SER A 12 REMARK 465 THR A 13 REMARK 465 ALA A 14 REMARK 465 LEU A 274 REMARK 465 GLY A 275 REMARK 465 ARG A 276 REMARK 465 GLY A 277 REMARK 465 PRO A 278 REMARK 465 ALA A 279 REMARK 465 ILE A 280 REMARK 465 ASP A 281 REMARK 465 ARG A 282 REMARK 465 LEU A 283 REMARK 465 ALA A 284 REMARK 465 ARG A 285 REMARK 465 GLU A 328 REMARK 465 ARG A 329 REMARK 465 GLY A 330 REMARK 465 SER A 331 REMARK 465 VAL A 332 REMARK 465 GLN A 333 REMARK 465 HIS A 334 REMARK 465 VAL B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 LEU B 4 REMARK 465 SER B 5 REMARK 465 VAL B 6 REMARK 465 ALA B 7 REMARK 465 THR B 8 REMARK 465 GLY B 9 REMARK 465 ALA B 10 REMARK 465 VAL B 11 REMARK 465 SER B 12 REMARK 465 THR B 13 REMARK 465 ALA B 14 REMARK 465 THR B 271 REMARK 465 ARG B 272 REMARK 465 ALA B 273 REMARK 465 LEU B 274 REMARK 465 GLY B 275 REMARK 465 ARG B 276 REMARK 465 GLY B 277 REMARK 465 PRO B 278 REMARK 465 ALA B 279 REMARK 465 ILE B 280 REMARK 465 ASP B 281 REMARK 465 ARG B 282 REMARK 465 LEU B 283 REMARK 465 ALA B 284 REMARK 465 ARG B 285 REMARK 465 ASP B 286 REMARK 465 ASP B 287 REMARK 465 LEU B 288 REMARK 465 GLU B 289 REMARK 465 ARG B 329 REMARK 465 GLY B 330 REMARK 465 SER B 331 REMARK 465 VAL B 332 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 80 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 145 CG CD OE1 OE2 REMARK 470 GLN A 174 CD OE1 NE2 REMARK 470 ARG A 272 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 286 CG OD1 OD2 REMARK 470 GLU A 289 CG CD OE1 OE2 REMARK 470 ARG A 430 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 433 CG CD OE1 OE2 REMARK 470 GLU A 437 CG CD OE1 OE2 REMARK 470 GLN A 450 CG CD OE1 NE2 REMARK 470 GLU B 39 CD OE1 OE2 REMARK 470 ARG B 87 NE CZ NH1 NH2 REMARK 470 ARG B 98 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 102 CG CD OE1 OE2 REMARK 470 LYS B 146 CD CE NZ REMARK 470 ILE B 155 CG1 CG2 CD1 REMARK 470 ARG B 158 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 159 CG CD OE1 OE2 REMARK 470 ARG B 163 NE CZ NH1 NH2 REMARK 470 GLN B 174 CD OE1 NE2 REMARK 470 LYS B 293 CG CD CE NZ REMARK 470 GLU B 328 CG CD OE1 OE2 REMARK 470 ARG B 430 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 123 O HOH A 576 2.01 REMARK 500 O ASP A 179 O HOH A 467 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 182 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 PRO B 345 C - N - CD ANGL. DEV. = -15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 183 58.27 -144.17 REMARK 500 SER A 363 -79.77 -121.95 REMARK 500 ALA B 22 -122.37 23.65 REMARK 500 SER B 363 -70.87 -119.90 REMARK 500 LEU B 404 -53.63 -125.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 452 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 554 O REMARK 620 2 HOH A 555 O 88.1 REMARK 620 3 HOH A 556 O 87.7 81.3 REMARK 620 4 HOH A 559 O 164.4 76.8 86.1 REMARK 620 5 HOH A 560 O 108.9 162.2 104.1 86.5 REMARK 620 6 HOH A 561 O 95.9 78.4 159.2 85.1 94.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 452 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 562 O REMARK 620 2 HOH B 575 O 149.6 REMARK 620 3 HOH B 676 O 80.1 69.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VAE A 451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 453 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RVA A 454 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RVA A 455 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RVA B 451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RVA B 453 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RV7 RELATED DB: PDB REMARK 900 RELATED ID: 3RV8 RELATED DB: PDB REMARK 900 RELATED ID: 3RV9 RELATED DB: PDB REMARK 900 RELATED ID: RV2386C RELATED DB: TARGETDB DBREF 3RV6 A 2 450 UNP Q7D785 MBTI_MYCTU 2 450 DBREF 3RV6 B 2 450 UNP Q7D785 MBTI_MYCTU 2 450 SEQADV 3RV6 VAL A 1 UNP Q7D785 EXPRESSION TAG SEQADV 3RV6 VAL B 1 UNP Q7D785 EXPRESSION TAG SEQRES 1 A 450 VAL SER GLU LEU SER VAL ALA THR GLY ALA VAL SER THR SEQRES 2 A 450 ALA SER SER SER ILE PRO MET PRO ALA GLY VAL ASN PRO SEQRES 3 A 450 ALA ASP LEU ALA ALA GLU LEU ALA ALA VAL VAL THR GLU SEQRES 4 A 450 SER VAL ASP GLU ASP TYR LEU LEU TYR GLU CYS ASP GLY SEQRES 5 A 450 GLN TRP VAL LEU ALA ALA GLY VAL GLN ALA MET VAL GLU SEQRES 6 A 450 LEU ASP SER ASP GLU LEU ARG VAL ILE ARG ASP GLY VAL SEQRES 7 A 450 THR ARG ARG GLN GLN TRP SER GLY ARG PRO GLY ALA ALA SEQRES 8 A 450 LEU GLY GLU ALA VAL ASP ARG LEU LEU LEU GLU THR ASP SEQRES 9 A 450 GLN ALA PHE GLY TRP VAL ALA PHE GLU PHE GLY VAL HIS SEQRES 10 A 450 ARG TYR GLY LEU GLN GLN ARG LEU ALA PRO HIS THR PRO SEQRES 11 A 450 LEU ALA ARG VAL PHE SER PRO ARG THR ARG ILE MET VAL SEQRES 12 A 450 SER GLU LYS GLU ILE ARG LEU PHE ASP ALA GLY ILE ARG SEQRES 13 A 450 HIS ARG GLU ALA ILE ASP ARG LEU LEU ALA THR GLY VAL SEQRES 14 A 450 ARG GLU VAL PRO GLN SER ARG SER VAL ASP VAL SER ASP SEQRES 15 A 450 ASP PRO SER GLY PHE ARG ARG ARG VAL ALA VAL ALA VAL SEQRES 16 A 450 ASP GLU ILE ALA ALA GLY ARG TYR HIS LYS VAL ILE LEU SEQRES 17 A 450 SER ARG CYS VAL GLU VAL PRO PHE ALA ILE ASP PHE PRO SEQRES 18 A 450 LEU THR TYR ARG LEU GLY ARG ARG HIS ASN THR PRO VAL SEQRES 19 A 450 ARG SER PHE LEU LEU GLN LEU GLY GLY ILE ARG ALA LEU SEQRES 20 A 450 GLY TYR SER PRO GLU LEU VAL THR ALA VAL ARG ALA ASP SEQRES 21 A 450 GLY VAL VAL ILE THR GLU PRO LEU ALA GLY THR ARG ALA SEQRES 22 A 450 LEU GLY ARG GLY PRO ALA ILE ASP ARG LEU ALA ARG ASP SEQRES 23 A 450 ASP LEU GLU SER ASN SER LYS GLU ILE VAL GLU HIS ALA SEQRES 24 A 450 ILE SER VAL ARG SER SER LEU GLU GLU ILE THR ASP ILE SEQRES 25 A 450 ALA GLU PRO GLY SER ALA ALA VAL ILE ASP PHE MET THR SEQRES 26 A 450 VAL ARG GLU ARG GLY SER VAL GLN HIS LEU GLY SER THR SEQRES 27 A 450 ILE ARG ALA ARG LEU ASP PRO SER SER ASP ARG MET ALA SEQRES 28 A 450 ALA LEU GLU ALA LEU PHE PRO ALA VAL THR ALA SER GLY SEQRES 29 A 450 ILE PRO LYS ALA ALA GLY VAL GLU ALA ILE PHE ARG LEU SEQRES 30 A 450 ASP GLU CYS PRO ARG GLY LEU TYR SER GLY ALA VAL VAL SEQRES 31 A 450 MET LEU SER ALA ASP GLY GLY LEU ASP ALA ALA LEU THR SEQRES 32 A 450 LEU ARG ALA ALA TYR GLN VAL GLY GLY ARG THR TRP LEU SEQRES 33 A 450 ARG ALA GLY ALA GLY ILE ILE GLU GLU SER GLU PRO GLU SEQRES 34 A 450 ARG GLU PHE GLU GLU THR CYS GLU LYS LEU SER THR LEU SEQRES 35 A 450 THR PRO TYR LEU VAL ALA ARG GLN SEQRES 1 B 450 VAL SER GLU LEU SER VAL ALA THR GLY ALA VAL SER THR SEQRES 2 B 450 ALA SER SER SER ILE PRO MET PRO ALA GLY VAL ASN PRO SEQRES 3 B 450 ALA ASP LEU ALA ALA GLU LEU ALA ALA VAL VAL THR GLU SEQRES 4 B 450 SER VAL ASP GLU ASP TYR LEU LEU TYR GLU CYS ASP GLY SEQRES 5 B 450 GLN TRP VAL LEU ALA ALA GLY VAL GLN ALA MET VAL GLU SEQRES 6 B 450 LEU ASP SER ASP GLU LEU ARG VAL ILE ARG ASP GLY VAL SEQRES 7 B 450 THR ARG ARG GLN GLN TRP SER GLY ARG PRO GLY ALA ALA SEQRES 8 B 450 LEU GLY GLU ALA VAL ASP ARG LEU LEU LEU GLU THR ASP SEQRES 9 B 450 GLN ALA PHE GLY TRP VAL ALA PHE GLU PHE GLY VAL HIS SEQRES 10 B 450 ARG TYR GLY LEU GLN GLN ARG LEU ALA PRO HIS THR PRO SEQRES 11 B 450 LEU ALA ARG VAL PHE SER PRO ARG THR ARG ILE MET VAL SEQRES 12 B 450 SER GLU LYS GLU ILE ARG LEU PHE ASP ALA GLY ILE ARG SEQRES 13 B 450 HIS ARG GLU ALA ILE ASP ARG LEU LEU ALA THR GLY VAL SEQRES 14 B 450 ARG GLU VAL PRO GLN SER ARG SER VAL ASP VAL SER ASP SEQRES 15 B 450 ASP PRO SER GLY PHE ARG ARG ARG VAL ALA VAL ALA VAL SEQRES 16 B 450 ASP GLU ILE ALA ALA GLY ARG TYR HIS LYS VAL ILE LEU SEQRES 17 B 450 SER ARG CYS VAL GLU VAL PRO PHE ALA ILE ASP PHE PRO SEQRES 18 B 450 LEU THR TYR ARG LEU GLY ARG ARG HIS ASN THR PRO VAL SEQRES 19 B 450 ARG SER PHE LEU LEU GLN LEU GLY GLY ILE ARG ALA LEU SEQRES 20 B 450 GLY TYR SER PRO GLU LEU VAL THR ALA VAL ARG ALA ASP SEQRES 21 B 450 GLY VAL VAL ILE THR GLU PRO LEU ALA GLY THR ARG ALA SEQRES 22 B 450 LEU GLY ARG GLY PRO ALA ILE ASP ARG LEU ALA ARG ASP SEQRES 23 B 450 ASP LEU GLU SER ASN SER LYS GLU ILE VAL GLU HIS ALA SEQRES 24 B 450 ILE SER VAL ARG SER SER LEU GLU GLU ILE THR ASP ILE SEQRES 25 B 450 ALA GLU PRO GLY SER ALA ALA VAL ILE ASP PHE MET THR SEQRES 26 B 450 VAL ARG GLU ARG GLY SER VAL GLN HIS LEU GLY SER THR SEQRES 27 B 450 ILE ARG ALA ARG LEU ASP PRO SER SER ASP ARG MET ALA SEQRES 28 B 450 ALA LEU GLU ALA LEU PHE PRO ALA VAL THR ALA SER GLY SEQRES 29 B 450 ILE PRO LYS ALA ALA GLY VAL GLU ALA ILE PHE ARG LEU SEQRES 30 B 450 ASP GLU CYS PRO ARG GLY LEU TYR SER GLY ALA VAL VAL SEQRES 31 B 450 MET LEU SER ALA ASP GLY GLY LEU ASP ALA ALA LEU THR SEQRES 32 B 450 LEU ARG ALA ALA TYR GLN VAL GLY GLY ARG THR TRP LEU SEQRES 33 B 450 ARG ALA GLY ALA GLY ILE ILE GLU GLU SER GLU PRO GLU SEQRES 34 B 450 ARG GLU PHE GLU GLU THR CYS GLU LYS LEU SER THR LEU SEQRES 35 B 450 THR PRO TYR LEU VAL ALA ARG GLN HET VAE A 451 22 HET MG A 452 1 HET SO4 A 453 5 HET RVA A 454 22 HET RVA A 455 22 HET RVA B 451 22 HET MG B 452 1 HET RVA B 453 22 HETNAM VAE 3-{[(E)-1-CARBOXY-2-PHENYLETHENYL]OXY}-2-HYDROXYBENZOIC HETNAM 2 VAE ACID HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM RVA 3-{[(Z)-1-CARBOXY-2-PHENYLETHENYL]OXY}-2-HYDROXYBENZOIC HETNAM 2 RVA ACID FORMUL 3 VAE C16 H12 O6 FORMUL 4 MG 2(MG 2+) FORMUL 5 SO4 O4 S 2- FORMUL 6 RVA 4(C16 H12 O6) FORMUL 11 HOH *618(H2 O) HELIX 1 1 ASN A 25 THR A 38 1 14 HELIX 2 2 ARG A 87 LEU A 100 1 14 HELIX 3 3 PHE A 112 GLY A 120 5 9 HELIX 4 4 LEU A 121 LEU A 125 5 5 HELIX 5 5 GLY A 154 GLY A 168 1 15 HELIX 6 6 GLY A 186 ALA A 200 1 15 HELIX 7 7 ASP A 219 ARG A 229 1 11 HELIX 8 8 ASP A 286 THR A 310 1 25 HELIX 9 9 ASP A 311 ALA A 313 5 3 HELIX 10 10 ASP A 348 PHE A 357 1 10 HELIX 11 11 ALA A 359 ALA A 362 5 4 HELIX 12 12 PRO A 366 ASP A 378 1 13 HELIX 13 13 GLU A 427 SER A 440 1 14 HELIX 14 14 THR A 441 LEU A 446 5 6 HELIX 15 15 ASN B 25 ASP B 42 1 18 HELIX 16 16 ARG B 87 LEU B 100 1 14 HELIX 17 17 PHE B 112 GLY B 120 5 9 HELIX 18 18 LEU B 121 LEU B 125 5 5 HELIX 19 19 GLY B 154 GLY B 168 1 15 HELIX 20 20 GLY B 186 ALA B 200 1 15 HELIX 21 21 ASP B 219 ARG B 229 1 11 HELIX 22 22 ASN B 291 ALA B 313 1 23 HELIX 23 23 ASP B 348 PHE B 357 1 10 HELIX 24 24 ALA B 359 ALA B 362 5 4 HELIX 25 25 PRO B 366 ASP B 378 1 13 HELIX 26 26 GLU B 427 SER B 440 1 14 HELIX 27 27 THR B 441 LEU B 446 5 6 SHEET 1 A11 SER A 17 PRO A 19 0 SHEET 2 A11 GLU A 147 PHE A 151 -1 O ILE A 148 N ILE A 18 SHEET 3 A11 PRO A 130 VAL A 143 -1 N MET A 142 O ARG A 149 SHEET 4 A11 GLN A 53 ASP A 67 -1 N ALA A 58 O THR A 139 SHEET 5 A11 GLN A 105 VAL A 110 0 SHEET 6 A11 ALA A 388 SER A 393 -1 O LEU A 392 N ALA A 106 SHEET 7 A11 LEU A 398 LEU A 402 -1 O ALA A 401 N VAL A 389 SHEET 8 A11 LEU A 253 VAL A 257 -1 N VAL A 257 O LEU A 398 SHEET 9 A11 VAL A 262 GLU A 266 -1 O ILE A 264 N ALA A 256 SHEET 10 A11 GLY A 336 ARG A 342 -1 O ALA A 341 N VAL A 263 SHEET 11 A11 ALA A 319 THR A 325 -1 N ALA A 319 O ARG A 340 SHEET 1 B11 VAL A 78 GLN A 82 0 SHEET 2 B11 LEU A 71 ARG A 75 -1 N LEU A 71 O GLN A 82 SHEET 3 B11 GLN A 53 ASP A 67 -1 N GLU A 65 O ARG A 72 SHEET 4 B11 PRO A 130 VAL A 143 -1 O THR A 139 N ALA A 58 SHEET 5 B11 TYR A 45 CYS A 50 0 SHEET 6 B11 ARG A 235 LEU A 241 -1 O LEU A 238 N LEU A 47 SHEET 7 B11 ILE A 244 SER A 250 -1 O ALA A 246 N LEU A 239 SHEET 8 B11 ALA A 406 VAL A 410 -1 O GLN A 409 N ARG A 245 SHEET 9 B11 ARG A 413 ILE A 422 -1 O TRP A 415 N TYR A 408 SHEET 10 B11 LYS A 205 VAL A 214 -1 N VAL A 206 O ILE A 422 SHEET 11 B11 GLY A 364 ILE A 365 -1 O ILE A 365 N LYS A 205 SHEET 1 C11 SER B 17 PRO B 19 0 SHEET 2 C11 GLU B 147 PHE B 151 -1 O ILE B 148 N ILE B 18 SHEET 3 C11 PRO B 130 VAL B 143 -1 N MET B 142 O ARG B 149 SHEET 4 C11 GLN B 53 ASP B 67 -1 N ALA B 58 O THR B 139 SHEET 5 C11 GLN B 105 VAL B 110 0 SHEET 6 C11 ALA B 388 SER B 393 -1 O LEU B 392 N ALA B 106 SHEET 7 C11 LEU B 398 LEU B 402 -1 O ALA B 401 N VAL B 389 SHEET 8 C11 LEU B 253 VAL B 257 -1 N VAL B 257 O LEU B 398 SHEET 9 C11 VAL B 262 PRO B 267 -1 O ILE B 264 N ALA B 256 SHEET 10 C11 HIS B 334 ARG B 342 -1 O ILE B 339 N THR B 265 SHEET 11 C11 ALA B 319 ARG B 327 -1 N ALA B 319 O ARG B 340 SHEET 1 D11 VAL B 78 GLN B 82 0 SHEET 2 D11 LEU B 71 ARG B 75 -1 N LEU B 71 O GLN B 82 SHEET 3 D11 GLN B 53 ASP B 67 -1 N GLU B 65 O ARG B 72 SHEET 4 D11 PRO B 130 VAL B 143 -1 O THR B 139 N ALA B 58 SHEET 5 D11 TYR B 45 CYS B 50 0 SHEET 6 D11 ARG B 235 LEU B 241 -1 O LEU B 238 N LEU B 47 SHEET 7 D11 ILE B 244 SER B 250 -1 O ILE B 244 N LEU B 241 SHEET 8 D11 ARG B 405 VAL B 410 -1 O GLN B 409 N ARG B 245 SHEET 9 D11 ARG B 413 ILE B 422 -1 O TRP B 415 N TYR B 408 SHEET 10 D11 LYS B 205 VAL B 214 -1 N VAL B 206 O ILE B 422 SHEET 11 D11 GLY B 364 ILE B 365 -1 O ILE B 365 N LYS B 205 LINK MG MG A 452 O HOH A 554 1555 1555 2.22 LINK MG MG A 452 O HOH A 555 1555 1555 2.26 LINK MG MG A 452 O HOH A 556 1555 1555 2.07 LINK MG MG A 452 O HOH A 559 1555 1555 2.09 LINK MG MG A 452 O HOH A 560 1555 1555 2.03 LINK MG MG A 452 O HOH A 561 1555 1555 1.93 LINK MG MG B 452 O HOH B 562 1555 1555 2.11 LINK MG MG B 452 O HOH B 575 1555 1555 2.14 LINK MG MG B 452 O HOH B 676 1555 1555 2.51 CISPEP 1 PHE A 357 PRO A 358 0 -12.31 CISPEP 2 ILE A 365 PRO A 366 0 -9.08 CISPEP 3 CYS A 380 PRO A 381 0 3.32 CISPEP 4 ALA B 22 GLY B 23 0 2.17 CISPEP 5 GLU B 266 PRO B 267 0 -7.12 CISPEP 6 PHE B 357 PRO B 358 0 5.87 CISPEP 7 ILE B 365 PRO B 366 0 -6.86 CISPEP 8 CYS B 380 PRO B 381 0 3.43 SITE 1 AC1 14 ILE A 207 LEU A 268 GLU A 294 GLU A 297 SITE 2 AC1 14 THR A 361 TYR A 385 LEU A 404 ALA A 418 SITE 3 AC1 14 GLY A 419 LYS A 438 HOH A 555 HOH A 559 SITE 4 AC1 14 HOH A 562 HOH A 598 SITE 1 AC2 6 HOH A 554 HOH A 555 HOH A 556 HOH A 559 SITE 2 AC2 6 HOH A 560 HOH A 561 SITE 1 AC3 5 ARG A 87 HOH A 765 ARG B 188 ARG B 189 SITE 2 AC3 5 HOH B 491 SITE 1 AC4 8 HIS A 204 VAL A 296 ILE A 300 ARG A 303 SITE 2 AC4 8 ILE A 365 PRO A 366 HOH A 563 HOH A 781 SITE 1 AC5 4 ILE A 155 ARG A 156 HOH A 618 HOH A 720 SITE 1 AC6 14 ILE B 207 GLU B 252 SER B 301 THR B 361 SITE 2 AC6 14 TYR B 385 LEU B 402 LEU B 404 ARG B 405 SITE 3 AC6 14 ALA B 418 GLY B 419 LYS B 438 HOH B 464 SITE 4 AC6 14 HOH B 546 HOH B 676 SITE 1 AC7 4 GLU B 434 HOH B 562 HOH B 575 HOH B 676 SITE 1 AC8 5 HIS B 204 LYS B 205 VAL B 296 ILE B 300 SITE 2 AC8 5 ILE B 423 CRYST1 52.748 91.530 96.466 90.00 104.83 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018958 0.000000 0.005020 0.00000 SCALE2 0.000000 0.010925 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010724 0.00000