HEADER HYDROLASE/HYDROLASE INHIBITOR 06-MAY-11 3RVB TITLE THE STRUCTURE OF HCV NS3 HELICASE (HELI-80) BOUND WITH INHIBITOR ITMN- TITLE 2 3479 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA HELICASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1186-1658; COMPND 5 EC: 3.6.4.13; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 3 ORGANISM_COMMON: HCV; SOURCE 4 ORGANISM_TAXID: 11103; SOURCE 5 GENE: NS3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 (DES); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PAB3 KEYWDS HELICASE, ATP HYDROLYSIS, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.MATHER,R.CHENG,D.SCHONFIELD,J.BARKER REVDAT 2 28-FEB-24 3RVB 1 REMARK SEQADV LINK REVDAT 1 24-SEP-14 3RVB 0 JRNL AUTH O.MATHER,R.CHENG,D.SCHONFIELD,J.BARKER JRNL TITL THE STRUCTURE OF HCV NS3 HELICASE WITH INHIBITOR ITMN-3479 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 24401 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1322 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1441 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.3400 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3336 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 131 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.61000 REMARK 3 B22 (A**2) : -1.61000 REMARK 3 B33 (A**2) : 2.41000 REMARK 3 B12 (A**2) : -0.80000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.246 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.203 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.477 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3463 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4739 ; 1.745 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 443 ; 6.670 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;38.471 ;23.233 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 517 ;15.829 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;20.827 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 546 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2643 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2210 ; 0.877 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3586 ; 1.618 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1253 ; 2.442 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1152 ; 3.863 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3RVB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065421. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25727 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 34.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 3.210 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.74 REMARK 200 R MERGE FOR SHELL (I) : 0.35800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6-1.0M SODIUM CITRATE TRIBASIC, 175 REMARK 280 -250MM NACL, 100MM TRIS PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.82067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.64133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 69.64133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.82067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 104.46200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 145 REMARK 465 GLY A 146 REMARK 465 ARG A 147 REMARK 465 GLY A 148 REMARK 465 SER A 149 REMARK 465 HIS A 150 REMARK 465 HIS A 151 REMARK 465 HIS A 152 REMARK 465 HIS A 153 REMARK 465 HIS A 154 REMARK 465 HIS A 155 REMARK 465 GLY A 156 REMARK 465 MET A 157 REMARK 465 ALA A 158 REMARK 465 SER A 159 REMARK 465 THR A 160 REMARK 465 ARG A 161 REMARK 465 GLY A 162 REMARK 465 VAL A 163 REMARK 465 ALA A 164 REMARK 465 LYS A 165 REMARK 465 ALA A 166 REMARK 465 VAL A 167 REMARK 465 ASP A 168 REMARK 465 PHE A 169 REMARK 465 VAL A 170 REMARK 465 PRO A 171 REMARK 465 VAL A 172 REMARK 465 GLU A 173 REMARK 465 SER A 174 REMARK 465 MET A 175 REMARK 465 GLU A 176 REMARK 465 THR A 177 REMARK 465 THR A 178 REMARK 465 MET A 179 REMARK 465 ARG A 180 REMARK 465 SER A 181 REMARK 465 PRO A 182 REMARK 465 VAL A 183 REMARK 465 PHE A 184 REMARK 465 THR A 185 REMARK 465 GLY A 281 REMARK 465 GLY A 282 REMARK 465 THR A 631 REMARK 465 ALA A 632 REMARK 465 ALA A 633 REMARK 465 ALA A 634 REMARK 465 ARG A 635 REMARK 465 GLU A 636 REMARK 465 ALA A 637 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 196 -81.03 -121.31 REMARK 500 THR A 212 -75.01 -137.07 REMARK 500 VAL A 256 -71.68 -56.33 REMARK 500 SER A 342 -162.35 -116.26 REMARK 500 TYR A 350 43.12 35.45 REMARK 500 LYS A 352 -157.26 -121.28 REMARK 500 LYS A 371 -37.70 -39.40 REMARK 500 THR A 419 -105.32 -85.69 REMARK 500 ASP A 421 -148.36 135.90 REMARK 500 PHE A 422 120.55 82.39 REMARK 500 THR A 443 -94.09 -123.64 REMARK 500 PRO A 523 152.56 -47.01 REMARK 500 TRP A 578 30.12 -98.74 REMARK 500 GLN A 580 -36.56 -33.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 2 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 38 O REMARK 620 2 ASN A 387 OD1 78.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE I79 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 4 DBREF 3RVB A 160 632 UNP P26663 POLG_HCVBK 1186 1658 SEQADV 3RVB MET A 145 UNP P26663 EXPRESSION TAG SEQADV 3RVB GLY A 146 UNP P26663 EXPRESSION TAG SEQADV 3RVB ARG A 147 UNP P26663 EXPRESSION TAG SEQADV 3RVB GLY A 148 UNP P26663 EXPRESSION TAG SEQADV 3RVB SER A 149 UNP P26663 EXPRESSION TAG SEQADV 3RVB HIS A 150 UNP P26663 EXPRESSION TAG SEQADV 3RVB HIS A 151 UNP P26663 EXPRESSION TAG SEQADV 3RVB HIS A 152 UNP P26663 EXPRESSION TAG SEQADV 3RVB HIS A 153 UNP P26663 EXPRESSION TAG SEQADV 3RVB HIS A 154 UNP P26663 EXPRESSION TAG SEQADV 3RVB HIS A 155 UNP P26663 EXPRESSION TAG SEQADV 3RVB GLY A 156 UNP P26663 EXPRESSION TAG SEQADV 3RVB MET A 157 UNP P26663 EXPRESSION TAG SEQADV 3RVB ALA A 158 UNP P26663 EXPRESSION TAG SEQADV 3RVB SER A 159 UNP P26663 EXPRESSION TAG SEQADV 3RVB THR A 196 UNP P26663 SER 1222 CONFLICT SEQADV 3RVB VAL A 240 UNP P26663 ALA 1266 CONFLICT SEQADV 3RVB ALA A 258 UNP P26663 THR 1284 CONFLICT SEQADV 3RVB GLY A 263 UNP P26663 ALA 1289 CONFLICT SEQADV 3RVB ILE A 265 UNP P26663 VAL 1291 CONFLICT SEQADV 3RVB SER A 299 UNP P26663 THR 1325 CONFLICT SEQADV 3RVB VAL A 358 UNP P26663 ALA 1384 CONFLICT SEQADV 3RVB ALA A 383 UNP P26663 GLY 1409 CONFLICT SEQADV 3RVB LEU A 386 UNP P26663 ILE 1412 CONFLICT SEQADV 3RVB SER A 403 UNP P26663 ILE 1429 CONFLICT SEQADV 3RVB ASP A 447 UNP P26663 GLU 1473 CONFLICT SEQADV 3RVB SER A 584 UNP P26663 CYS 1610 CONFLICT SEQADV 3RVB THR A 586 UNP P26663 ILE 1612 CONFLICT SEQADV 3RVB LEU A 605 UNP P26663 VAL 1631 CONFLICT SEQADV 3RVB VAL A 615 UNP P26663 ILE 1641 CONFLICT SEQADV 3RVB PHE A 618 UNP P26663 TYR 1644 CONFLICT SEQADV 3RVB ALA A 632 UNP P26663 SER 1658 CONFLICT SEQADV 3RVB ALA A 633 UNP P26663 INSERTION SEQADV 3RVB ALA A 634 UNP P26663 INSERTION SEQADV 3RVB ARG A 635 UNP P26663 INSERTION SEQADV 3RVB GLU A 636 UNP P26663 INSERTION SEQADV 3RVB ALA A 637 UNP P26663 INSERTION SEQRES 1 A 493 MET GLY ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET SEQRES 2 A 493 ALA SER THR ARG GLY VAL ALA LYS ALA VAL ASP PHE VAL SEQRES 3 A 493 PRO VAL GLU SER MET GLU THR THR MET ARG SER PRO VAL SEQRES 4 A 493 PHE THR ASP ASN SER SER PRO PRO ALA VAL PRO GLN THR SEQRES 5 A 493 PHE GLN VAL ALA HIS LEU HIS ALA PRO THR GLY SER GLY SEQRES 6 A 493 LYS SER THR LYS VAL PRO ALA ALA TYR ALA ALA GLN GLY SEQRES 7 A 493 TYR LYS VAL LEU VAL LEU ASN PRO SER VAL ALA ALA THR SEQRES 8 A 493 LEU GLY PHE GLY VAL TYR MET SER LYS ALA HIS GLY ILE SEQRES 9 A 493 ASP PRO ASN ILE ARG THR GLY VAL ARG ALA ILE THR THR SEQRES 10 A 493 GLY GLY PRO ILE THR TYR SER THR TYR GLY LYS PHE LEU SEQRES 11 A 493 ALA ASP GLY GLY CYS SER GLY GLY ALA TYR ASP ILE ILE SEQRES 12 A 493 ILE CYS ASP GLU CYS HIS SER THR ASP SER THR SER ILE SEQRES 13 A 493 LEU GLY ILE GLY THR VAL LEU ASP GLN ALA GLU THR ALA SEQRES 14 A 493 GLY ALA ARG LEU VAL VAL LEU ALA THR ALA THR PRO PRO SEQRES 15 A 493 GLY SER VAL THR VAL PRO HIS PRO ASN ILE GLU GLU VAL SEQRES 16 A 493 ALA LEU SER ASN THR GLY GLU ILE PRO PHE TYR GLY LYS SEQRES 17 A 493 ALA ILE PRO ILE GLU VAL ILE ARG GLY GLY ARG HIS LEU SEQRES 18 A 493 ILE PHE CYS HIS SER LYS LYS LYS CYS ASP GLU LEU ALA SEQRES 19 A 493 ALA LYS LEU SER ALA LEU GLY LEU ASN ALA VAL ALA TYR SEQRES 20 A 493 TYR ARG GLY LEU ASP VAL SER VAL ILE PRO THR SER GLY SEQRES 21 A 493 ASP VAL VAL VAL VAL ALA THR ASP ALA LEU MET THR GLY SEQRES 22 A 493 TYR THR GLY ASP PHE ASP SER VAL ILE ASP CYS ASN THR SEQRES 23 A 493 CYS VAL THR GLN THR VAL ASP PHE SER LEU ASP PRO THR SEQRES 24 A 493 PHE THR ILE ASP THR THR THR VAL PRO GLN ASP ALA VAL SEQRES 25 A 493 SER ARG SER GLN ARG ARG GLY ARG THR GLY ARG GLY ARG SEQRES 26 A 493 ARG GLY ILE TYR ARG PHE VAL THR PRO GLY GLU ARG PRO SEQRES 27 A 493 SER GLY MET PHE ASP SER SER VAL LEU CYS GLU CYS TYR SEQRES 28 A 493 ASP ALA GLY CYS ALA TRP TYR GLU LEU THR PRO ALA GLU SEQRES 29 A 493 THR SER VAL ARG LEU ARG ALA TYR LEU ASN THR PRO GLY SEQRES 30 A 493 LEU PRO VAL CYS GLN ASP HIS LEU GLU PHE TRP GLU SER SEQRES 31 A 493 VAL PHE THR GLY LEU THR HIS ILE ASP ALA HIS PHE LEU SEQRES 32 A 493 SER GLN THR LYS GLN ALA GLY ASP ASN PHE PRO TYR LEU SEQRES 33 A 493 VAL ALA TYR GLN ALA THR VAL CYS ALA ARG ALA GLN ALA SEQRES 34 A 493 PRO PRO PRO SER TRP ASP GLN MET TRP LYS SER LEU THR SEQRES 35 A 493 ARG LEU LYS PRO THR LEU HIS GLY PRO THR PRO LEU LEU SEQRES 36 A 493 TYR ARG LEU GLY ALA LEU GLN ASN GLU VAL THR LEU THR SEQRES 37 A 493 HIS PRO VAL THR LYS PHE ILE MET ALA CYS MET SER ALA SEQRES 38 A 493 ASP LEU GLU VAL VAL THR ALA ALA ALA ARG GLU ALA HET I79 A 1 33 HET MG A 2 1 HET MG A 3 1 HET CL A 4 1 HETNAM I79 {1-[(5-CHLORO-2-METHYL-1-BENZOTHIOPHEN-3-YL)METHYL]-6- HETNAM 2 I79 (3,5-DIAMINOPHENYL)-1H-INDOL-3-YL}ACETIC ACID HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 2 I79 C26 H22 CL N3 O2 S FORMUL 3 MG 2(MG 2+) FORMUL 5 CL CL 1- FORMUL 6 HOH *131(H2 O) HELIX 1 1 THR A 212 GLN A 221 1 10 HELIX 2 2 SER A 231 GLY A 247 1 17 HELIX 3 3 TYR A 270 ASP A 276 1 7 HELIX 4 4 ASP A 296 ALA A 310 1 15 HELIX 5 5 PRO A 355 ILE A 359 5 5 HELIX 6 6 SER A 370 LEU A 384 1 15 HELIX 7 7 ASP A 396 ILE A 400 5 5 HELIX 8 8 ALA A 413 TYR A 418 1 6 HELIX 9 9 ASP A 454 GLY A 463 1 10 HELIX 10 10 ASP A 487 TRP A 501 1 15 HELIX 11 11 THR A 505 ASN A 518 1 14 HELIX 12 12 HIS A 528 GLY A 538 1 11 HELIX 13 13 ASP A 543 GLY A 554 1 12 HELIX 14 14 PHE A 557 ALA A 571 1 15 HELIX 15 15 ASP A 579 THR A 586 5 8 HELIX 16 16 LEU A 588 LEU A 592 5 5 HELIX 17 17 HIS A 613 ALA A 625 1 13 SHEET 1 A 7 GLN A 198 HIS A 203 0 SHEET 2 A 7 LEU A 317 THR A 322 1 O LEU A 320 N ALA A 200 SHEET 3 A 7 ILE A 286 CYS A 289 1 N ILE A 287 O VAL A 319 SHEET 4 A 7 VAL A 225 ASN A 229 1 N LEU A 226 O ILE A 288 SHEET 5 A 7 ILE A 265 THR A 269 1 O THR A 266 N VAL A 225 SHEET 6 A 7 ASN A 251 ARG A 253 1 N ASN A 251 O TYR A 267 SHEET 7 A 7 ALA A 258 ILE A 259 -1 O ILE A 259 N ILE A 252 SHEET 1 B 6 ILE A 336 ALA A 340 0 SHEET 2 B 6 GLY A 471 PHE A 475 1 O GLY A 471 N GLU A 337 SHEET 3 B 6 SER A 424 ASP A 427 1 N VAL A 425 O ARG A 474 SHEET 4 B 6 ARG A 363 PHE A 367 1 N PHE A 367 O ILE A 426 SHEET 5 B 6 VAL A 406 ALA A 410 1 O VAL A 408 N HIS A 364 SHEET 6 B 6 ALA A 388 TYR A 391 1 N VAL A 389 O VAL A 407 SHEET 1 C 2 ILE A 347 PHE A 349 0 SHEET 2 C 2 LYS A 352 ILE A 354 -1 O LYS A 352 N PHE A 349 SHEET 1 D 2 THR A 430 ASP A 437 0 SHEET 2 D 2 THR A 445 PRO A 452 -1 O VAL A 451 N CYS A 431 SHEET 1 E 2 THR A 596 PRO A 597 0 SHEET 2 E 2 VAL A 609 THR A 610 1 O THR A 610 N THR A 596 LINK MG MG A 2 O HOH A 38 1555 1555 2.25 LINK MG MG A 2 OD1 ASN A 387 1555 1555 2.79 CISPEP 1 ASP A 441 PRO A 442 0 12.53 SITE 1 AC1 13 HOH A 68 HOH A 98 VAL A 232 GLY A 255 SITE 2 AC1 13 THR A 269 GLY A 271 LYS A 272 ALA A 275 SITE 3 AC1 13 SER A 297 THR A 298 ALA A 497 TRP A 501 SITE 4 AC1 13 TYR A 502 SITE 1 AC2 3 HOH A 38 ASN A 387 ALA A 388 SITE 1 AC3 6 HOH A 36 HOH A 77 GLY A 209 LYS A 210 SITE 2 AC3 6 SER A 211 THR A 212 SITE 1 AC4 1 PHE A 536 CRYST1 92.354 92.354 104.462 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010828 0.006251 0.000000 0.00000 SCALE2 0.000000 0.012503 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009573 0.00000