HEADER PROTEIN BINDING 06-MAY-11 3RVC TITLE EFFECTOR DOMAIN OF NS1 FROM INFLUENZA A/PR/8/34 CONTAINING A W187A TITLE 2 MUTATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NS1, NS1A; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 211044; SOURCE 4 STRAIN: A/PUERTO RICO/8/1934 H1N1; SOURCE 5 GENE: NS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INTERFERON ANTAGONIST, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR P.S.KERRY,E.LONG,M.A.TAYLOR,R.J.M.RUSSELL REVDAT 2 28-FEB-24 3RVC 1 SEQADV REVDAT 1 24-AUG-11 3RVC 0 JRNL AUTH P.S.KERRY,E.LONG,M.A.TAYLOR,R.J.RUSSELL JRNL TITL CONSERVATION OF A CRYSTALLOGRAPHIC INTERFACE SUGGESTS A ROLE JRNL TITL 2 FOR BETA-SHEET AUGMENTATION IN INFLUENZA VIRUS NS1 JRNL TITL 3 MULTIFUNCTIONALITY. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 67 858 2011 JRNL REFN ESSN 1744-3091 JRNL PMID 21821881 JRNL DOI 10.1107/S1744309111019312 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 3 NUMBER OF REFLECTIONS : 9517 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 18.0989 - 3.4362 1.00 1452 162 0.1926 0.2440 REMARK 3 2 3.4362 - 2.7304 0.98 1358 153 0.1875 0.2137 REMARK 3 3 2.7304 - 2.3862 0.98 1344 147 0.2022 0.2755 REMARK 3 4 2.3862 - 2.1684 0.98 1328 145 0.1977 0.2343 REMARK 3 5 2.1684 - 2.0132 0.98 1313 143 0.1936 0.2700 REMARK 3 6 2.0132 - 1.8946 0.78 1069 119 0.2034 0.2666 REMARK 3 7 1.8946 - 1.8000 0.53 703 81 0.2340 0.3122 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.41 REMARK 3 B_SOL : 43.51 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.94690 REMARK 3 B22 (A**2) : -2.62440 REMARK 3 B33 (A**2) : 0.67750 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 932 REMARK 3 ANGLE : 1.030 1262 REMARK 3 CHIRALITY : 0.070 150 REMARK 3 PLANARITY : 0.004 161 REMARK 3 DIHEDRAL : 13.657 350 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RVC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065422. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9857 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 18.098 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 25.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS TRIS, 0.2M NACL, 22% PEG REMARK 280 3350, 20MM XYLITOL, 40MM THIENO[2.3-B]PYRIDIN-2-YLMETHANOL, PH REMARK 280 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.69850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.69850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 15.99600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.38650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 15.99600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.38650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.69850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 15.99600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.38650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.69850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 15.99600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.38650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 74 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 79 REMARK 465 THR A 80 REMARK 465 MET A 81 REMARK 465 ALA A 82 REMARK 465 SER A 83 REMARK 465 VAL A 84 REMARK 465 PRO A 85 REMARK 465 ARG A 204 REMARK 465 SER A 205 REMARK 465 SER A 206 REMARK 465 ASN A 207 REMARK 465 GLU A 208 REMARK 465 ASN A 209 REMARK 465 GLY A 210 REMARK 465 ARG A 211 REMARK 465 PRO A 212 REMARK 465 PRO A 213 REMARK 465 LEU A 214 REMARK 465 THR A 215 REMARK 465 PRO A 216 REMARK 465 LYS A 217 REMARK 465 GLN A 218 REMARK 465 LYS A 219 REMARK 465 ARG A 220 REMARK 465 GLU A 221 REMARK 465 MET A 222 REMARK 465 ALA A 223 REMARK 465 GLY A 224 REMARK 465 THR A 225 REMARK 465 ILE A 226 REMARK 465 ARG A 227 REMARK 465 SER A 228 REMARK 465 GLU A 229 REMARK 465 VAL A 230 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 46 O HOH A 48 3454 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 142 -80.58 -106.24 REMARK 500 LEU A 166 56.20 38.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3O9R RELATED DB: PDB REMARK 900 RELATED ID: 3O9Q RELATED DB: PDB DBREF 3RVC A 79 230 UNP P03496 NS1_I34A1 79 230 SEQADV 3RVC ALA A 187 UNP P03496 TRP 187 ENGINEERED MUTATION SEQRES 1 A 152 MET THR MET ALA SER VAL PRO ALA SER ARG TYR LEU THR SEQRES 2 A 152 ASP MET THR LEU GLU GLU MET SER ARG ASP TRP SER MET SEQRES 3 A 152 LEU ILE PRO LYS GLN LYS VAL ALA GLY PRO LEU CYS ILE SEQRES 4 A 152 ARG MET ASP GLN ALA ILE MET ASP LYS ASN ILE ILE LEU SEQRES 5 A 152 LYS ALA ASN PHE SER VAL ILE PHE ASP ARG LEU GLU THR SEQRES 6 A 152 LEU ILE LEU LEU ARG ALA PHE THR GLU GLU GLY ALA ILE SEQRES 7 A 152 VAL GLY GLU ILE SER PRO LEU PRO SER LEU PRO GLY HIS SEQRES 8 A 152 THR ALA GLU ASP VAL LYS ASN ALA VAL GLY VAL LEU ILE SEQRES 9 A 152 GLY GLY LEU GLU ALA ASN ASP ASN THR VAL ARG VAL SER SEQRES 10 A 152 GLU THR LEU GLN ARG PHE ALA TRP ARG SER SER ASN GLU SEQRES 11 A 152 ASN GLY ARG PRO PRO LEU THR PRO LYS GLN LYS ARG GLU SEQRES 12 A 152 MET ALA GLY THR ILE ARG SER GLU VAL FORMUL 2 HOH *81(H2 O) HELIX 1 1 THR A 94 ARG A 100 1 7 HELIX 2 2 THR A 170 ASN A 188 1 19 HELIX 3 3 SER A 195 ALA A 202 1 8 SHEET 1 A 6 ARG A 88 THR A 91 0 SHEET 2 A 6 ASN A 127 ILE A 137 -1 O VAL A 136 N ARG A 88 SHEET 3 A 6 ARG A 140 THR A 151 -1 O GLU A 142 N SER A 135 SHEET 4 A 6 ILE A 156 PRO A 162 -1 O VAL A 157 N ALA A 149 SHEET 5 A 6 LEU A 115 ASP A 120 -1 N ARG A 118 O GLU A 159 SHEET 6 A 6 PRO A 107 ALA A 112 -1 N LYS A 110 O ILE A 117 SHEET 1 B 3 ARG A 88 THR A 91 0 SHEET 2 B 3 ASN A 127 ILE A 137 -1 O VAL A 136 N ARG A 88 SHEET 3 B 3 THR A 191 VAL A 194 1 O THR A 191 N ILE A 128 CRYST1 31.992 102.773 67.397 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031258 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009730 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014837 0.00000