HEADER SIGNALING PROTEIN 06-MAY-11 3RVL TITLE STRUCTURE OF THE CHEY-BEF3 COMPLEX WITH SUBSTITUTIONS AT 59 AND 89: TITLE 2 N59D AND E89R COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHEMOTAXIS PROTEIN CHEY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B1882, CHEY, JW1871; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28ACHEYN59DE89R KEYWDS RESPONSE REGULATOR, TWO-COMPONENT, SIGNAL TRANSDUCTION, CHEY, BETA- KEYWDS 2 ALPHA PROTEIN, CHEMOTAXIS, CHEA CHEX CHEZ, PHOSPHORYLATION, KEYWDS 3 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.A.STARBIRD,R.M.IMMORMINO,R.E.SILVERSMITH,R.B.BOURRET REVDAT 3 13-SEP-23 3RVL 1 REMARK SEQADV REVDAT 2 21-SEP-16 3RVL 1 JRNL REVDAT 1 09-MAY-12 3RVL 0 JRNL AUTH R.M.IMMORMINO,C.A.STARBIRD,R.E.SILVERSMITH,R.B.BOURRET JRNL TITL PROBING MECHANISTIC SIMILARITIES BETWEEN RESPONSE REGULATOR JRNL TITL 2 SIGNALING PROTEINS AND HALOACID DEHALOGENASE PHOSPHATASES. JRNL REF BIOCHEMISTRY V. 54 3514 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25928369 JRNL DOI 10.1021/ACS.BIOCHEM.5B00286 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 42133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.9257 - 3.8034 0.97 2913 141 0.1640 0.1906 REMARK 3 2 3.8034 - 3.0204 1.00 2829 169 0.1435 0.1751 REMARK 3 3 3.0204 - 2.6390 1.00 2802 137 0.1534 0.1641 REMARK 3 4 2.6390 - 2.3979 0.99 2792 145 0.1472 0.1749 REMARK 3 5 2.3979 - 2.2261 0.99 2732 162 0.1430 0.1748 REMARK 3 6 2.2261 - 2.0949 0.99 2730 144 0.1431 0.1561 REMARK 3 7 2.0949 - 1.9901 0.98 2716 144 0.1447 0.1829 REMARK 3 8 1.9901 - 1.9035 0.98 2705 143 0.1498 0.1813 REMARK 3 9 1.9035 - 1.8302 0.97 2686 139 0.1494 0.1968 REMARK 3 10 1.8302 - 1.7671 0.95 2586 139 0.1520 0.1640 REMARK 3 11 1.7671 - 1.7118 0.95 2607 136 0.1683 0.2018 REMARK 3 12 1.7118 - 1.6629 0.94 2599 133 0.1698 0.2118 REMARK 3 13 1.6629 - 1.6191 0.93 2558 137 0.1965 0.1933 REMARK 3 14 1.6191 - 1.5796 0.91 2474 132 0.2115 0.2755 REMARK 3 15 1.5796 - 1.5437 0.83 2290 113 0.2233 0.2389 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.89 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 45.68 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.37970 REMARK 3 B22 (A**2) : 3.83470 REMARK 3 B33 (A**2) : -0.45490 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 2119 REMARK 3 ANGLE : 1.588 2866 REMARK 3 CHIRALITY : 0.089 326 REMARK 3 PLANARITY : 0.007 369 REMARK 3 DIHEDRAL : 12.838 801 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -9.1880 -31.8172 16.3240 REMARK 3 T TENSOR REMARK 3 T11: 0.0832 T22: 0.0847 REMARK 3 T33: 0.1192 T12: -0.0015 REMARK 3 T13: 0.0050 T23: -0.0366 REMARK 3 L TENSOR REMARK 3 L11: 0.5982 L22: 0.7681 REMARK 3 L33: 0.7623 L12: 0.1004 REMARK 3 L13: -0.3378 L23: -0.1475 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: 0.0393 S13: 0.0059 REMARK 3 S21: 0.0255 S22: 0.0092 S23: 0.0169 REMARK 3 S31: 0.0357 S32: -0.0512 S33: 0.0261 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -0.2971 -2.5424 14.9291 REMARK 3 T TENSOR REMARK 3 T11: 0.0827 T22: 0.1132 REMARK 3 T33: 0.0560 T12: -0.0157 REMARK 3 T13: -0.0082 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.8763 L22: 0.9586 REMARK 3 L33: 0.5419 L12: 0.3919 REMARK 3 L13: 0.2516 L23: 0.1463 REMARK 3 S TENSOR REMARK 3 S11: -0.0761 S12: 0.2081 S13: -0.0406 REMARK 3 S21: -0.0057 S22: 0.0693 S23: -0.0437 REMARK 3 S31: -0.1052 S32: 0.0532 S33: -0.0051 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RVL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065430. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI REMARK 200 OPTICS : SAGITTAL CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43539 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09400 REMARK 200 FOR THE DATA SET : 18.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.40300 REMARK 200 FOR SHELL : 3.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1FQW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE 2.5M, TRIS 100MM PH REMARK 280 8.25, GLYCEROL 5% (V/V), MNCL2 20MM, BECL2 1MM, NAF 10MM, 4.25MG/ REMARK 280 ML CHEY, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 18.81500 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.64000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 18.81500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.64000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 165 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 5 CG CD OE1 OE2 REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 GLU B 37 CG CD OE1 OE2 REMARK 470 GLN B 47 CG CD OE1 NE2 REMARK 470 GLU B 93 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB3 MET B 78 HO1 GOL B 135 1.25 REMARK 500 OD1 ASP B 57 BE BEF B 130 1.72 REMARK 500 OD1 ASP A 57 BE BEF A 130 1.78 REMARK 500 O HOH A 333 O HOH A 404 1.83 REMARK 500 O HOH B 189 O HOH B 289 1.85 REMARK 500 O HOH A 279 O HOH B 343 1.85 REMARK 500 O HOH B 366 O HOH B 371 1.88 REMARK 500 O HOH A 205 O HOH A 339 1.92 REMARK 500 O HOH B 182 O HOH B 210 1.93 REMARK 500 O HOH A 373 O HOH B 388 1.97 REMARK 500 O HOH B 139 O HOH B 155 1.98 REMARK 500 O HOH A 338 O HOH A 356 1.98 REMARK 500 O HOH A 231 O HOH A 379 1.99 REMARK 500 O HOH B 274 O HOH B 324 2.00 REMARK 500 O HOH B 380 O HOH B 381 2.00 REMARK 500 O HOH B 319 O HOH B 320 2.00 REMARK 500 O HOH A 194 O HOH B 209 2.03 REMARK 500 O HOH B 269 O HOH B 303 2.03 REMARK 500 O HOH A 323 O HOH A 326 2.03 REMARK 500 O HOH A 334 O HOH A 347 2.04 REMARK 500 O HOH A 301 O HOH A 355 2.04 REMARK 500 O HOH A 246 O HOH A 379 2.04 REMARK 500 O HOH B 324 O HOH B 365 2.08 REMARK 500 O HOH B 221 O HOH B 251 2.11 REMARK 500 O HOH A 399 O HOH B 275 2.11 REMARK 500 ND2 ASN B 44 O HOH B 292 2.11 REMARK 500 OG SER A 15 O HOH A 357 2.11 REMARK 500 O HOH B 224 O HOH B 251 2.11 REMARK 500 O HOH B 359 O HOH B 390 2.12 REMARK 500 O HOH A 199 O HOH B 216 2.12 REMARK 500 O HOH B 320 O HOH B 341 2.13 REMARK 500 O HOH B 163 O HOH B 210 2.13 REMARK 500 O HOH B 140 O HOH B 294 2.14 REMARK 500 OE2 GLU A 67 O HOH A 226 2.16 REMARK 500 O HOH A 178 O HOH A 182 2.17 REMARK 500 O HOH A 218 O HOH A 220 2.18 REMARK 500 O ALA B 77 O HOH B 375 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HO2 GOL B 135 HO2 GOL B 135 2555 1.21 REMARK 500 O HOH A 179 O HOH A 321 3545 1.25 REMARK 500 O HOH A 302 O HOH A 355 1455 1.89 REMARK 500 O HOH A 249 O HOH A 356 2455 2.08 REMARK 500 O HOH B 375 O HOH B 375 2555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 58 -71.15 -101.34 REMARK 500 ASN A 62 -51.54 73.75 REMARK 500 MET A 78 24.47 -146.81 REMARK 500 TRP B 58 -67.32 -101.06 REMARK 500 ASN B 62 -52.91 71.68 REMARK 500 MET B 78 34.57 -150.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEF A 130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 133 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEF B 130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 133 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 135 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: ACTIVE SITE FOR RESIDUE BEF A 130 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: ACTIVE SITE FOR RESIDUE MN A 131 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: ACTIVE SITE FOR RESIDUE BEF B 130 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: ACTIVE SITE FOR RESIDUE MN B 131 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FQW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ACTIVATED CHEY REMARK 900 RELATED ID: 3RVK RELATED DB: PDB REMARK 900 STRUCTURE OF THE CHEY-MN2+ COMPLEX WITH SUBSTITUTIONS AT 59 AND 89 REMARK 900 RELATED ID: 3RVJ RELATED DB: PDB REMARK 900 STRUCTURE OF THE CHEY-BEF3 COMPLEX WITH SUBSTITUTIONS AT 59 AND 89 REMARK 900 RELATED ID: 3RVM RELATED DB: PDB REMARK 900 STRUCTURE OF THE CHEY-MN2+ COMPLEX WITH SUBSTITUTIONS AT 59 AND 89 REMARK 900 RELATED ID: 3RVN RELATED DB: PDB REMARK 900 STRUCTURE OF THE CHEY-BEF3 COMPLEX WITH SUBSTITUTIONS AT 59 AND 89 REMARK 900 RELATED ID: 3RVO RELATED DB: PDB REMARK 900 STRUCTURE OF THE CHEY-MN2+ COMPLEX WITH SUBSTITUTIONS AT 59 AND 89 REMARK 900 RELATED ID: 3RVP RELATED DB: PDB REMARK 900 STRUCTURE OF THE CHEY-BEF3 COMPLEX WITH SUBSTITUTIONS AT 59 AND 89 REMARK 900 RELATED ID: 3RVQ RELATED DB: PDB REMARK 900 STRUCTURE OF THE CHEY-MN2+ COMPLEX WITH SUBSTITUTIONS AT 59 AND 89 REMARK 900 RELATED ID: 3RVR RELATED DB: PDB REMARK 900 STRUCTURE OF THE CHEY N59D/E89R MOLYBDATE COMPLEX REMARK 900 RELATED ID: 3RVS RELATED DB: PDB REMARK 900 STRUCTURE OF THE CHEY N59D/E89R TUNGSTATE COMPLEX DBREF 3RVL A 1 129 UNP P0AE67 CHEY_ECOLI 1 129 DBREF 3RVL B 1 129 UNP P0AE67 CHEY_ECOLI 1 129 SEQADV 3RVL GLY A -2 UNP P0AE67 EXPRESSION TAG SEQADV 3RVL SER A -1 UNP P0AE67 EXPRESSION TAG SEQADV 3RVL HIS A 0 UNP P0AE67 EXPRESSION TAG SEQADV 3RVL ASP A 59 UNP P0AE67 ASN 59 ENGINEERED MUTATION SEQADV 3RVL ARG A 89 UNP P0AE67 GLU 89 ENGINEERED MUTATION SEQADV 3RVL GLY B -2 UNP P0AE67 EXPRESSION TAG SEQADV 3RVL SER B -1 UNP P0AE67 EXPRESSION TAG SEQADV 3RVL HIS B 0 UNP P0AE67 EXPRESSION TAG SEQADV 3RVL ASP B 59 UNP P0AE67 ASN 59 ENGINEERED MUTATION SEQADV 3RVL ARG B 89 UNP P0AE67 GLU 89 ENGINEERED MUTATION SEQRES 1 A 132 GLY SER HIS MET ALA ASP LYS GLU LEU LYS PHE LEU VAL SEQRES 2 A 132 VAL ASP ASP PHE SER THR MET ARG ARG ILE VAL ARG ASN SEQRES 3 A 132 LEU LEU LYS GLU LEU GLY PHE ASN ASN VAL GLU GLU ALA SEQRES 4 A 132 GLU ASP GLY VAL ASP ALA LEU ASN LYS LEU GLN ALA GLY SEQRES 5 A 132 GLY TYR GLY PHE VAL ILE SER ASP TRP ASP MET PRO ASN SEQRES 6 A 132 MET ASP GLY LEU GLU LEU LEU LYS THR ILE ARG ALA ASP SEQRES 7 A 132 GLY ALA MET SER ALA LEU PRO VAL LEU MET VAL THR ALA SEQRES 8 A 132 ARG ALA LYS LYS GLU ASN ILE ILE ALA ALA ALA GLN ALA SEQRES 9 A 132 GLY ALA SER GLY TYR VAL VAL LYS PRO PHE THR ALA ALA SEQRES 10 A 132 THR LEU GLU GLU LYS LEU ASN LYS ILE PHE GLU LYS LEU SEQRES 11 A 132 GLY MET SEQRES 1 B 132 GLY SER HIS MET ALA ASP LYS GLU LEU LYS PHE LEU VAL SEQRES 2 B 132 VAL ASP ASP PHE SER THR MET ARG ARG ILE VAL ARG ASN SEQRES 3 B 132 LEU LEU LYS GLU LEU GLY PHE ASN ASN VAL GLU GLU ALA SEQRES 4 B 132 GLU ASP GLY VAL ASP ALA LEU ASN LYS LEU GLN ALA GLY SEQRES 5 B 132 GLY TYR GLY PHE VAL ILE SER ASP TRP ASP MET PRO ASN SEQRES 6 B 132 MET ASP GLY LEU GLU LEU LEU LYS THR ILE ARG ALA ASP SEQRES 7 B 132 GLY ALA MET SER ALA LEU PRO VAL LEU MET VAL THR ALA SEQRES 8 B 132 ARG ALA LYS LYS GLU ASN ILE ILE ALA ALA ALA GLN ALA SEQRES 9 B 132 GLY ALA SER GLY TYR VAL VAL LYS PRO PHE THR ALA ALA SEQRES 10 B 132 THR LEU GLU GLU LYS LEU ASN LYS ILE PHE GLU LYS LEU SEQRES 11 B 132 GLY MET HET BEF A 130 4 HET MN A 131 1 HET SO4 A 132 5 HET SO4 A 133 5 HET SO4 A 134 5 HET BEF B 130 4 HET MN B 131 1 HET MN B 132 1 HET SO4 B 133 5 HET GOL B 134 28 HET GOL B 135 14 HETNAM BEF BERYLLIUM TRIFLUORIDE ION HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 BEF 2(BE F3 1-) FORMUL 4 MN 3(MN 2+) FORMUL 5 SO4 4(O4 S 2-) FORMUL 12 GOL 2(C3 H8 O3) FORMUL 14 HOH *410(H2 O) HELIX 1 1 ALA A 2 LEU A 6 5 5 HELIX 2 2 PHE A 14 LEU A 28 1 15 HELIX 3 3 ASP A 38 ALA A 48 1 11 HELIX 4 4 ASP A 64 ASP A 75 1 12 HELIX 5 5 LYS A 91 ALA A 101 1 11 HELIX 6 6 THR A 112 LEU A 127 1 16 HELIX 7 7 PHE B 14 LEU B 28 1 15 HELIX 8 8 ASP B 38 GLN B 47 1 10 HELIX 9 9 ASP B 64 ALA B 74 1 11 HELIX 10 10 LYS B 91 ALA B 101 1 11 HELIX 11 11 THR B 112 LEU B 127 1 16 SHEET 1 A 5 VAL A 33 ALA A 36 0 SHEET 2 A 5 PHE A 8 VAL A 11 1 N VAL A 10 O GLU A 34 SHEET 3 A 5 PHE A 53 SER A 56 1 O ILE A 55 N VAL A 11 SHEET 4 A 5 VAL A 83 THR A 87 1 O LEU A 84 N VAL A 54 SHEET 5 A 5 GLY A 105 VAL A 108 1 O VAL A 107 N MET A 85 SHEET 1 B 5 VAL B 33 ALA B 36 0 SHEET 2 B 5 PHE B 8 VAL B 11 1 N PHE B 8 O GLU B 34 SHEET 3 B 5 PHE B 53 SER B 56 1 O ILE B 55 N VAL B 11 SHEET 4 B 5 VAL B 83 THR B 87 1 O LEU B 84 N VAL B 54 SHEET 5 B 5 GLY B 105 VAL B 108 1 O VAL B 107 N MET B 85 CISPEP 1 LYS A 109 PRO A 110 0 -0.75 CISPEP 2 LYS B 109 PRO B 110 0 -8.21 SITE 1 AC1 10 ASP A 57 TRP A 58 ASP A 59 THR A 87 SITE 2 AC1 10 ALA A 88 LYS A 109 MN A 131 HOH A 135 SITE 3 AC1 10 HOH A 145 HOH A 151 SITE 1 AC2 6 ASP A 13 ASP A 57 ASP A 59 BEF A 130 SITE 2 AC2 6 HOH A 135 HOH A 145 SITE 1 AC3 9 ARG A 19 ARG A 89 LYS A 91 ASN A 94 SITE 2 AC3 9 HOH A 136 HOH A 172 HOH A 235 HOH A 240 SITE 3 AC3 9 HOH A 241 SITE 1 AC4 8 THR A 16 ARG A 19 ARG A 89 HOH A 172 SITE 2 AC4 8 HOH A 193 HOH A 203 HOH A 314 HOH A 358 SITE 1 AC5 6 LYS A 91 LYS A 92 HOH A 170 HOH A 212 SITE 2 AC5 6 HOH A 349 HOH A 393 SITE 1 AC6 10 ASP B 57 TRP B 58 ASP B 59 THR B 87 SITE 2 AC6 10 ALA B 88 LYS B 109 MN B 131 HOH B 136 SITE 3 AC6 10 HOH B 143 HOH B 233 SITE 1 AC7 6 ASP B 13 ASP B 57 ASP B 59 BEF B 130 SITE 2 AC7 6 HOH B 136 HOH B 143 SITE 1 AC8 3 ASN B 62 HOH B 234 HOH B 297 SITE 1 AC9 6 THR B 16 ARG B 19 ARG B 89 HOH B 178 SITE 2 AC9 6 HOH B 230 HOH B 306 SITE 1 BC1 6 LYS A 119 LYS B 91 LYS B 92 GLU B 93 SITE 2 BC1 6 HOH B 159 HOH B 362 SITE 1 BC2 6 LEU B 46 GLY B 49 GLY B 50 ALA B 77 SITE 2 BC2 6 MET B 78 HOH B 165 SITE 1 CC1 10 ASP A 57 TRP A 58 ASP A 59 THR A 87 SITE 2 CC1 10 ALA A 88 LYS A 109 MN A 131 HOH A 135 SITE 3 CC1 10 HOH A 145 HOH A 151 SITE 1 CC2 6 ASP A 13 ASP A 57 ASP A 59 BEF A 130 SITE 2 CC2 6 HOH A 135 HOH A 145 SITE 1 CC3 10 ASP B 57 TRP B 58 ASP B 59 THR B 87 SITE 2 CC3 10 ALA B 88 LYS B 109 MN B 131 HOH B 136 SITE 3 CC3 10 HOH B 143 HOH B 233 SITE 1 CC4 6 ASP B 13 ASP B 57 ASP B 59 BEF B 130 SITE 2 CC4 6 HOH B 136 HOH B 143 CRYST1 37.630 72.436 107.280 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026575 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013805 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009321 0.00000