HEADER METAL TRANSPORT 06-MAY-11 3RW0 TITLE CRYSTAL STRUCTURE OF THE NAVAB VOLTAGE-GATED SODIUM CHANNEL TITLE 2 (MET221CYS, 2.95 A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ION TRANSPORT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCOBACTER BUTZLERI; SOURCE 3 ORGANISM_TAXID: 367737; SOURCE 4 STRAIN: RM4018; SOURCE 5 GENE: ABU_1752; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HI5; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC DUAL KEYWDS TETRAMERIC ION CHANNEL, VOLTAGE-GATED SODIUM-SELECTIVE ION CHANNEL, KEYWDS 2 MEMBRANE, METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR J.PAYANDEH,T.SCHEUER,N.ZHENG,W.A.CATTERALL REVDAT 3 06-NOV-24 3RW0 1 REMARK SEQADV LINK REVDAT 2 27-JUL-11 3RW0 1 JRNL REVDAT 1 13-JUL-11 3RW0 0 JRNL AUTH J.PAYANDEH,T.SCHEUER,N.ZHENG,W.A.CATTERALL JRNL TITL THE CRYSTAL STRUCTURE OF A VOLTAGE-GATED SODIUM CHANNEL. JRNL REF NATURE V. 475 353 2011 JRNL REFN ISSN 0028-0836 JRNL PMID 21743477 JRNL DOI 10.1038/NATURE10238 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 31350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1554 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.4326 REMARK 3 BIN FREE R VALUE : 0.3094 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 20 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3652 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 127 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : 1.337 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BUILT USING SAD DATA SETS FROM HG AND REMARK 3 SEMET CRYSTALS REMARK 4 REMARK 4 3RW0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065445. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99994 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31353 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.63500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CHAPSO:DMPC BICELLES, 2 M AMMONIUM REMARK 280 SULPHATE, 0.1 M NA-CITRATE PH 4.75, 28% GLUCOSE, NICOTINIC ACID REMARK 280 (SAT.), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 62.74750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.90750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 95.91200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 62.74750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.90750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 95.91200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 62.74750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.90750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 95.91200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 62.74750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.90750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 95.91200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -183.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -125.49500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 983 REMARK 465 ASP A 984 REMARK 465 TYR A 985 REMARK 465 LYS A 986 REMARK 465 ASP A 987 REMARK 465 ASP A 988 REMARK 465 ASP A 989 REMARK 465 ASP A 990 REMARK 465 LYS A 991 REMARK 465 GLY A 992 REMARK 465 SER A 993 REMARK 465 LEU A 994 REMARK 465 VAL A 995 REMARK 465 PRO A 996 REMARK 465 ARG A 997 REMARK 465 GLY A 998 REMARK 465 ALA A 1222 REMARK 465 ILE A 1223 REMARK 465 LEU A 1224 REMARK 465 ASN A 1225 REMARK 465 GLN A 1226 REMARK 465 LYS A 1227 REMARK 465 GLU A 1228 REMARK 465 GLU A 1229 REMARK 465 GLN A 1230 REMARK 465 HIS A 1231 REMARK 465 ILE A 1232 REMARK 465 ILE A 1233 REMARK 465 ASP A 1234 REMARK 465 GLU A 1235 REMARK 465 VAL A 1236 REMARK 465 GLN A 1237 REMARK 465 SER A 1238 REMARK 465 HIS A 1239 REMARK 465 GLU A 1240 REMARK 465 ASP A 1241 REMARK 465 ASN A 1242 REMARK 465 ILE A 1243 REMARK 465 ASN A 1244 REMARK 465 ASN A 1245 REMARK 465 GLU A 1246 REMARK 465 ILE A 1247 REMARK 465 ILE A 1248 REMARK 465 LYS A 1249 REMARK 465 LEU A 1250 REMARK 465 ARG A 1251 REMARK 465 GLU A 1252 REMARK 465 GLU A 1253 REMARK 465 ILE A 1254 REMARK 465 VAL A 1255 REMARK 465 GLU A 1256 REMARK 465 LEU A 1257 REMARK 465 LYS A 1258 REMARK 465 GLU A 1259 REMARK 465 LEU A 1260 REMARK 465 ILE A 1261 REMARK 465 LYS A 1262 REMARK 465 THR A 1263 REMARK 465 SER A 1264 REMARK 465 LEU A 1265 REMARK 465 LYS A 1266 REMARK 465 ASN A 1267 REMARK 465 MSE B 1983 REMARK 465 ASP B 1984 REMARK 465 TYR B 1985 REMARK 465 LYS B 1986 REMARK 465 ASP B 1987 REMARK 465 ASP B 1988 REMARK 465 ASP B 1989 REMARK 465 ASP B 1990 REMARK 465 LYS B 1991 REMARK 465 GLY B 1992 REMARK 465 SER B 1993 REMARK 465 LEU B 1994 REMARK 465 VAL B 1995 REMARK 465 PRO B 1996 REMARK 465 ARG B 1997 REMARK 465 GLY B 1998 REMARK 465 ALA B 2222 REMARK 465 ILE B 2223 REMARK 465 LEU B 2224 REMARK 465 ASN B 2225 REMARK 465 GLN B 2226 REMARK 465 LYS B 2227 REMARK 465 GLU B 2228 REMARK 465 GLU B 2229 REMARK 465 GLN B 2230 REMARK 465 HIS B 2231 REMARK 465 ILE B 2232 REMARK 465 ILE B 2233 REMARK 465 ASP B 2234 REMARK 465 GLU B 2235 REMARK 465 VAL B 2236 REMARK 465 GLN B 2237 REMARK 465 SER B 2238 REMARK 465 HIS B 2239 REMARK 465 GLU B 2240 REMARK 465 ASP B 2241 REMARK 465 ASN B 2242 REMARK 465 ILE B 2243 REMARK 465 ASN B 2244 REMARK 465 ASN B 2245 REMARK 465 GLU B 2246 REMARK 465 ILE B 2247 REMARK 465 ILE B 2248 REMARK 465 LYS B 2249 REMARK 465 LEU B 2250 REMARK 465 ARG B 2251 REMARK 465 GLU B 2252 REMARK 465 GLU B 2253 REMARK 465 ILE B 2254 REMARK 465 VAL B 2255 REMARK 465 GLU B 2256 REMARK 465 LEU B 2257 REMARK 465 LYS B 2258 REMARK 465 GLU B 2259 REMARK 465 LEU B 2260 REMARK 465 ILE B 2261 REMARK 465 LYS B 2262 REMARK 465 THR B 2263 REMARK 465 SER B 2264 REMARK 465 LEU B 2265 REMARK 465 LYS B 2266 REMARK 465 ASN B 2267 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A1041 CE2 PHE A1041 CD2 0.133 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A1042 N - CA - C ANGL. DEV. = 17.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A1041 17.15 -144.23 REMARK 500 ARG A1068 -116.67 58.57 REMARK 500 SER A1093 160.67 74.52 REMARK 500 GLN A1115 -48.83 74.20 REMARK 500 MSE A1130 -3.68 -141.80 REMARK 500 SER A1178 17.56 52.55 REMARK 500 SER A1180 -62.69 -95.75 REMARK 500 GLU B2032 8.19 -64.95 REMARK 500 SER B2040 -85.00 -124.22 REMARK 500 ARG B2068 -117.49 55.39 REMARK 500 PHE B2072 30.92 -70.28 REMARK 500 SER B2093 156.00 74.84 REMARK 500 ALA B2112 25.55 -78.79 REMARK 500 PRO B2114 -179.43 -66.82 REMARK 500 GLN B2115 -52.47 73.22 REMARK 500 SER B2178 40.76 34.15 REMARK 500 ALA B2220 -83.49 -69.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PX4 A 4002 REMARK 610 PX4 A 4003 REMARK 610 PX4 A 4004 REMARK 610 PX4 A 4007 REMARK 610 PX4 A 4013 REMARK 610 PX4 A 4014 REMARK 610 PX4 B 4001 REMARK 610 PX4 B 4011 REMARK 610 PX4 B 4012 REMARK 610 PX4 B 4017 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PX4 A 4002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PX4 A 4003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PX4 A 4004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PX4 A 4013 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PX4 B 4001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PX4 B 4011 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PX4 B 4012 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RVY RELATED DB: PDB REMARK 900 RELATED ID: 3RVZ RELATED DB: PDB DBREF 3RW0 A 1001 1267 UNP A8EVM5 A8EVM5_ARCB4 1 267 DBREF 3RW0 B 2001 2267 UNP A8EVM5 A8EVM5_ARCB4 1 267 SEQADV 3RW0 MSE A 983 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 ASP A 984 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 TYR A 985 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 LYS A 986 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 ASP A 987 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 ASP A 988 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 ASP A 989 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 ASP A 990 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 LYS A 991 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 GLY A 992 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 SER A 993 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 LEU A 994 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 VAL A 995 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 PRO A 996 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 ARG A 997 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 GLY A 998 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 SER A 999 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 HIS A 1000 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 CYS A 1221 UNP A8EVM5 MET 221 ENGINEERED MUTATION SEQADV 3RW0 MSE B 1983 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 ASP B 1984 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 TYR B 1985 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 LYS B 1986 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 ASP B 1987 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 ASP B 1988 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 ASP B 1989 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 ASP B 1990 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 LYS B 1991 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 GLY B 1992 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 SER B 1993 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 LEU B 1994 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 VAL B 1995 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 PRO B 1996 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 ARG B 1997 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 GLY B 1998 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 SER B 1999 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 HIS B 2000 UNP A8EVM5 EXPRESSION TAG SEQADV 3RW0 CYS B 2221 UNP A8EVM5 MET 221 ENGINEERED MUTATION SEQRES 1 A 285 MSE ASP TYR LYS ASP ASP ASP ASP LYS GLY SER LEU VAL SEQRES 2 A 285 PRO ARG GLY SER HIS MSE TYR LEU ARG ILE THR ASN ILE SEQRES 3 A 285 VAL GLU SER SER PHE PHE THR LYS PHE ILE ILE TYR LEU SEQRES 4 A 285 ILE VAL LEU ASN GLY ILE THR MSE GLY LEU GLU THR SER SEQRES 5 A 285 LYS THR PHE MSE GLN SER PHE GLY VAL TYR THR THR LEU SEQRES 6 A 285 PHE ASN GLN ILE VAL ILE THR ILE PHE THR ILE GLU ILE SEQRES 7 A 285 ILE LEU ARG ILE TYR VAL HIS ARG ILE SER PHE PHE LYS SEQRES 8 A 285 ASP PRO TRP SER LEU PHE ASP PHE PHE VAL VAL ALA ILE SEQRES 9 A 285 SER LEU VAL PRO THR SER SER GLY PHE GLU ILE LEU ARG SEQRES 10 A 285 VAL LEU ARG VAL LEU ARG LEU PHE ARG LEU VAL THR ALA SEQRES 11 A 285 VAL PRO GLN MSE ARG LYS ILE VAL SER ALA LEU ILE SER SEQRES 12 A 285 VAL ILE PRO GLY MSE LEU SER VAL ILE ALA LEU MSE THR SEQRES 13 A 285 LEU PHE PHE TYR ILE PHE ALA ILE MSE ALA THR GLN LEU SEQRES 14 A 285 PHE GLY GLU ARG PHE PRO GLU TRP PHE GLY THR LEU GLY SEQRES 15 A 285 GLU SER PHE TYR THR LEU PHE GLN VAL MSE THR LEU GLU SEQRES 16 A 285 SER TRP SER MSE GLY ILE VAL ARG PRO LEU MSE GLU VAL SEQRES 17 A 285 TYR PRO TYR ALA TRP VAL PHE PHE ILE PRO PHE ILE PHE SEQRES 18 A 285 VAL VAL THR PHE VAL MSE ILE ASN LEU VAL VAL ALA ILE SEQRES 19 A 285 ILE VAL ASP ALA CYS ALA ILE LEU ASN GLN LYS GLU GLU SEQRES 20 A 285 GLN HIS ILE ILE ASP GLU VAL GLN SER HIS GLU ASP ASN SEQRES 21 A 285 ILE ASN ASN GLU ILE ILE LYS LEU ARG GLU GLU ILE VAL SEQRES 22 A 285 GLU LEU LYS GLU LEU ILE LYS THR SER LEU LYS ASN SEQRES 1 B 285 MSE ASP TYR LYS ASP ASP ASP ASP LYS GLY SER LEU VAL SEQRES 2 B 285 PRO ARG GLY SER HIS MSE TYR LEU ARG ILE THR ASN ILE SEQRES 3 B 285 VAL GLU SER SER PHE PHE THR LYS PHE ILE ILE TYR LEU SEQRES 4 B 285 ILE VAL LEU ASN GLY ILE THR MSE GLY LEU GLU THR SER SEQRES 5 B 285 LYS THR PHE MSE GLN SER PHE GLY VAL TYR THR THR LEU SEQRES 6 B 285 PHE ASN GLN ILE VAL ILE THR ILE PHE THR ILE GLU ILE SEQRES 7 B 285 ILE LEU ARG ILE TYR VAL HIS ARG ILE SER PHE PHE LYS SEQRES 8 B 285 ASP PRO TRP SER LEU PHE ASP PHE PHE VAL VAL ALA ILE SEQRES 9 B 285 SER LEU VAL PRO THR SER SER GLY PHE GLU ILE LEU ARG SEQRES 10 B 285 VAL LEU ARG VAL LEU ARG LEU PHE ARG LEU VAL THR ALA SEQRES 11 B 285 VAL PRO GLN MSE ARG LYS ILE VAL SER ALA LEU ILE SER SEQRES 12 B 285 VAL ILE PRO GLY MSE LEU SER VAL ILE ALA LEU MSE THR SEQRES 13 B 285 LEU PHE PHE TYR ILE PHE ALA ILE MSE ALA THR GLN LEU SEQRES 14 B 285 PHE GLY GLU ARG PHE PRO GLU TRP PHE GLY THR LEU GLY SEQRES 15 B 285 GLU SER PHE TYR THR LEU PHE GLN VAL MSE THR LEU GLU SEQRES 16 B 285 SER TRP SER MSE GLY ILE VAL ARG PRO LEU MSE GLU VAL SEQRES 17 B 285 TYR PRO TYR ALA TRP VAL PHE PHE ILE PRO PHE ILE PHE SEQRES 18 B 285 VAL VAL THR PHE VAL MSE ILE ASN LEU VAL VAL ALA ILE SEQRES 19 B 285 ILE VAL ASP ALA CYS ALA ILE LEU ASN GLN LYS GLU GLU SEQRES 20 B 285 GLN HIS ILE ILE ASP GLU VAL GLN SER HIS GLU ASP ASN SEQRES 21 B 285 ILE ASN ASN GLU ILE ILE LYS LEU ARG GLU GLU ILE VAL SEQRES 22 B 285 GLU LEU LYS GLU LEU ILE LYS THR SER LEU LYS ASN MODRES 3RW0 MSE A 1001 MET SELENOMETHIONINE MODRES 3RW0 MSE A 1029 MET SELENOMETHIONINE MODRES 3RW0 MSE A 1038 MET SELENOMETHIONINE MODRES 3RW0 MSE A 1116 MET SELENOMETHIONINE MODRES 3RW0 MSE A 1130 MET SELENOMETHIONINE MODRES 3RW0 MSE A 1137 MET SELENOMETHIONINE MODRES 3RW0 MSE A 1147 MET SELENOMETHIONINE MODRES 3RW0 MSE A 1174 MET SELENOMETHIONINE MODRES 3RW0 MSE A 1181 MET SELENOMETHIONINE MODRES 3RW0 MSE A 1188 MET SELENOMETHIONINE MODRES 3RW0 MSE A 1209 MET SELENOMETHIONINE MODRES 3RW0 MSE B 2001 MET SELENOMETHIONINE MODRES 3RW0 MSE B 2029 MET SELENOMETHIONINE MODRES 3RW0 MSE B 2038 MET SELENOMETHIONINE MODRES 3RW0 MSE B 2116 MET SELENOMETHIONINE MODRES 3RW0 MSE B 2130 MET SELENOMETHIONINE MODRES 3RW0 MSE B 2137 MET SELENOMETHIONINE MODRES 3RW0 MSE B 2147 MET SELENOMETHIONINE MODRES 3RW0 MSE B 2174 MET SELENOMETHIONINE MODRES 3RW0 MSE B 2181 MET SELENOMETHIONINE MODRES 3RW0 MSE B 2188 MET SELENOMETHIONINE MODRES 3RW0 MSE B 2209 MET SELENOMETHIONINE HET MSE A1001 8 HET MSE A1029 8 HET MSE A1038 8 HET MSE A1116 8 HET MSE A1130 8 HET MSE A1137 8 HET MSE A1147 8 HET MSE A1174 8 HET MSE A1181 8 HET MSE A1188 8 HET MSE A1209 8 HET MSE B2001 8 HET MSE B2029 8 HET MSE B2038 8 HET MSE B2116 8 HET MSE B2130 8 HET MSE B2137 8 HET MSE B2147 8 HET MSE B2174 8 HET MSE B2181 8 HET MSE B2188 8 HET MSE B2209 8 HET PX4 A4002 16 HET PX4 A4003 17 HET PX4 A4004 5 HET PX4 A4007 6 HET PX4 A4013 17 HET PX4 A4014 5 HET PX4 B4001 21 HET PX4 B4011 21 HET PX4 B4012 13 HET PX4 B4017 6 HETNAM MSE SELENOMETHIONINE HETNAM PX4 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE FORMUL 1 MSE 22(C5 H11 N O2 SE) FORMUL 3 PX4 10(C36 H73 N O8 P 1+) FORMUL 13 HOH *2(H2 O) HELIX 1 1 SER A 999 GLU A 1010 1 12 HELIX 2 2 SER A 1011 GLU A 1032 1 22 HELIX 3 3 SER A 1034 ARG A 1068 1 35 HELIX 4 4 ILE A 1069 LYS A 1073 5 5 HELIX 5 5 ASP A 1074 SER A 1087 1 14 HELIX 6 6 GLU A 1096 LEU A 1101 1 6 HELIX 7 7 ARG A 1102 LEU A 1106 5 5 HELIX 8 8 PHE A 1107 ALA A 1112 1 6 HELIX 9 9 GLN A 1115 ILE A 1127 1 13 HELIX 10 10 MSE A 1130 GLY A 1153 1 24 HELIX 11 11 PHE A 1156 GLY A 1161 1 6 HELIX 12 12 THR A 1162 THR A 1175 1 14 HELIX 13 13 ILE A 1183 GLU A 1189 1 7 HELIX 14 14 ALA A 1194 CYS A 1221 1 28 HELIX 15 15 SER B 1999 GLU B 2010 1 12 HELIX 16 16 SER B 2011 GLU B 2032 1 22 HELIX 17 17 SER B 2034 GLN B 2039 1 6 HELIX 18 18 PHE B 2041 ARG B 2068 1 28 HELIX 19 19 ILE B 2069 LYS B 2073 5 5 HELIX 20 20 ASP B 2074 VAL B 2089 1 16 HELIX 21 21 GLU B 2096 ARG B 2102 1 7 HELIX 22 22 VAL B 2103 LEU B 2106 5 4 HELIX 23 23 PHE B 2107 ALA B 2112 1 6 HELIX 24 24 GLN B 2115 ILE B 2127 1 13 HELIX 25 25 MSE B 2130 GLY B 2153 1 24 HELIX 26 26 PHE B 2156 GLY B 2161 1 6 HELIX 27 27 THR B 2162 THR B 2175 1 14 HELIX 28 28 ILE B 2183 GLU B 2189 1 7 HELIX 29 29 TYR B 2193 CYS B 2221 1 29 LINK C HIS A1000 N MSE A1001 1555 1555 1.33 LINK C MSE A1001 N TYR A1002 1555 1555 1.31 LINK C THR A1028 N MSE A1029 1555 1555 1.33 LINK C MSE A1029 N GLY A1030 1555 1555 1.33 LINK C PHE A1037 N MSE A1038 1555 1555 1.33 LINK C MSE A1038 N GLN A1039 1555 1555 1.33 LINK C GLN A1115 N MSE A1116 1555 1555 1.33 LINK C MSE A1116 N ARG A1117 1555 1555 1.34 LINK C GLY A1129 N MSE A1130 1555 1555 1.33 LINK C MSE A1130 N LEU A1131 1555 1555 1.32 LINK C LEU A1136 N MSE A1137 1555 1555 1.33 LINK C MSE A1137 N THR A1138 1555 1555 1.33 LINK C ILE A1146 N MSE A1147 1555 1555 1.33 LINK C MSE A1147 N ALA A1148 1555 1555 1.33 LINK C VAL A1173 N MSE A1174 1555 1555 1.33 LINK C MSE A1174 N THR A1175 1555 1555 1.33 LINK C SER A1180 N MSE A1181 1555 1555 1.33 LINK C MSE A1181 N GLY A1182 1555 1555 1.33 LINK C LEU A1187 N MSE A1188 1555 1555 1.33 LINK C MSE A1188 N GLU A1189 1555 1555 1.33 LINK C VAL A1208 N MSE A1209 1555 1555 1.33 LINK C MSE A1209 N ILE A1210 1555 1555 1.33 LINK C HIS B2000 N MSE B2001 1555 1555 1.33 LINK C MSE B2001 N TYR B2002 1555 1555 1.33 LINK C THR B2028 N MSE B2029 1555 1555 1.33 LINK C MSE B2029 N GLY B2030 1555 1555 1.33 LINK C PHE B2037 N MSE B2038 1555 1555 1.33 LINK C MSE B2038 N GLN B2039 1555 1555 1.33 LINK C GLN B2115 N MSE B2116 1555 1555 1.33 LINK C MSE B2116 N ARG B2117 1555 1555 1.33 LINK C GLY B2129 N MSE B2130 1555 1555 1.33 LINK C MSE B2130 N LEU B2131 1555 1555 1.32 LINK C LEU B2136 N MSE B2137 1555 1555 1.34 LINK C MSE B2137 N THR B2138 1555 1555 1.33 LINK C ILE B2146 N MSE B2147 1555 1555 1.33 LINK C MSE B2147 N ALA B2148 1555 1555 1.33 LINK C VAL B2173 N MSE B2174 1555 1555 1.33 LINK C MSE B2174 N THR B2175 1555 1555 1.33 LINK C SER B2180 N MSE B2181 1555 1555 1.33 LINK C MSE B2181 N GLY B2182 1555 1555 1.33 LINK C LEU B2187 N MSE B2188 1555 1555 1.33 LINK C MSE B2188 N GLU B2189 1555 1555 1.33 LINK C VAL B2208 N MSE B2209 1555 1555 1.33 LINK C MSE B2209 N ILE B2210 1555 1555 1.33 SITE 1 AC1 3 ILE A1097 VAL B2190 TYR B2191 SITE 1 AC2 5 TYR A1142 PX4 A4004 GLY B2030 LEU B2031 SITE 2 AC2 5 SER B2034 SITE 1 AC3 1 PX4 A4003 SITE 1 AC4 5 GLY A1030 LEU A1031 SER A1034 THR A1036 SITE 2 AC4 5 TYR B2142 SITE 1 AC5 5 MSE A1137 THR A1162 GLY A1164 TYR A1168 SITE 2 AC5 5 TRP B2195 SITE 1 AC6 5 TRP A1195 MSE B2137 THR B2162 GLY B2164 SITE 2 AC6 5 TYR B2168 SITE 1 AC7 2 TYR A1191 ILE B2097 CRYST1 125.495 125.815 191.824 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007968 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007948 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005213 0.00000