HEADER OXIDOREDUCTASE 09-MAY-11 3RWL TITLE STRUCTURE OF P450PYR HYDROXYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 ALKANE HYDROXYLASE 1 CYP153A7; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.15.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOPYXIS MACROGOLTABIDA; SOURCE 3 ORGANISM_TAXID: 33050; SOURCE 4 GENE: AHPG1, SPHINGOMONAS SP.; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS P450 MONOOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.POMPIDOR REVDAT 3 28-FEB-24 3RWL 1 REMARK SEQADV REVDAT 2 25-APR-12 3RWL 1 JRNL REVDAT 1 18-APR-12 3RWL 0 JRNL AUTH S.Q.PHAM,G.POMPIDOR,J.LIU,X.D.LI,Z.LI JRNL TITL EVOLVING P450PYR HYDROXYLASE FOR HIGHLY ENANTIOSELECTIVE JRNL TITL 2 HYDROXYLATION AT NON-ACTIVATED CARBON ATOM. JRNL REF CHEM.COMMUN.(CAMB.) V. 48 4618 2012 JRNL REFN ISSN 1359-7345 JRNL PMID 22430002 JRNL DOI 10.1039/C2CC30779K REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 38304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1913 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2266 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3229 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 278 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.26000 REMARK 3 B12 (A**2) : 0.09000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.754 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3430 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2379 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4679 ; 2.085 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5753 ; 1.149 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 422 ; 6.669 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;29.413 ;23.036 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 590 ;16.022 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;19.401 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 502 ; 0.149 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3829 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 719 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2048 ; 1.341 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 822 ; 0.404 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3333 ; 2.307 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1382 ; 3.648 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1335 ; 5.721 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3RWL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065466. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.736 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38307 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 48.759 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.52200 REMARK 200 R SYM FOR SHELL (I) : 0.52200 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, DM, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 10% ISOPROPANOL, 100 MM REMARK 280 TRIS, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 13.98800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.97600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 VAL A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 SER A -1 REMARK 465 SER A 0 REMARK 465 GLY A 1 REMARK 465 GLU A 2 REMARK 465 HIS A 3 REMARK 465 THR A 4 REMARK 465 GLY A 5 REMARK 465 GLN A 89 REMARK 465 LYS A 90 REMARK 465 GLY A 91 REMARK 465 GLY A 92 REMARK 465 ASP A 93 REMARK 465 GLY A 94 REMARK 465 GLY A 95 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 201 O HOH A 699 1.97 REMARK 500 O HOH A 713 O HOH A 735 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 47 CA ALA A 47 CB 0.127 REMARK 500 GLU A 173 CB GLU A 173 CG 0.137 REMARK 500 VAL A 184 CB VAL A 184 CG1 -0.134 REMARK 500 ARG A 306 CD ARG A 306 NE -0.117 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 105 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 105 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG A 113 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 135 CD - NE - CZ ANGL. DEV. = 14.5 DEGREES REMARK 500 ARG A 135 NE - CZ - NH1 ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG A 135 NE - CZ - NH2 ANGL. DEV. = -8.3 DEGREES REMARK 500 ARG A 176 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 VAL A 219 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 ARG A 261 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 261 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 306 CD - NE - CZ ANGL. DEV. = 17.2 DEGREES REMARK 500 ARG A 306 NE - CZ - NH1 ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG A 306 NE - CZ - NH2 ANGL. DEV. = -15.1 DEGREES REMARK 500 ARG A 321 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 321 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 352 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 352 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 377 NE - CZ - NH1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG A 377 NE - CZ - NH2 ANGL. DEV. = -9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 41 75.00 -160.10 REMARK 500 ASN A 69 68.02 -111.40 REMARK 500 ALA A 103 55.51 -101.13 REMARK 500 PRO A 118 -41.85 -28.35 REMARK 500 VAL A 155 -62.80 -120.91 REMARK 500 ASP A 169 54.27 36.32 REMARK 500 ASN A 257 -78.04 -80.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 306 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 417 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 366 SG REMARK 620 2 HEM A 417 NA 101.6 REMARK 620 3 HEM A 417 NB 89.0 87.8 REMARK 620 4 HEM A 417 NC 89.6 168.4 89.6 REMARK 620 5 HEM A 417 ND 103.3 87.9 167.5 92.3 REMARK 620 6 HOH A 644 O 171.3 77.4 82.2 91.1 85.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 417 DBREF 3RWL A 2 416 UNP Q5F4D9 Q5F4D9_9SPHN 2 416 SEQADV 3RWL MET A -9 UNP Q5F4D9 EXPRESSION TAG SEQADV 3RWL VAL A -8 UNP Q5F4D9 EXPRESSION TAG SEQADV 3RWL HIS A -7 UNP Q5F4D9 EXPRESSION TAG SEQADV 3RWL HIS A -6 UNP Q5F4D9 EXPRESSION TAG SEQADV 3RWL HIS A -5 UNP Q5F4D9 EXPRESSION TAG SEQADV 3RWL HIS A -4 UNP Q5F4D9 EXPRESSION TAG SEQADV 3RWL HIS A -3 UNP Q5F4D9 EXPRESSION TAG SEQADV 3RWL HIS A -2 UNP Q5F4D9 EXPRESSION TAG SEQADV 3RWL SER A -1 UNP Q5F4D9 EXPRESSION TAG SEQADV 3RWL SER A 0 UNP Q5F4D9 EXPRESSION TAG SEQADV 3RWL GLY A 1 UNP Q5F4D9 EXPRESSION TAG SEQRES 1 A 426 MET VAL HIS HIS HIS HIS HIS HIS SER SER GLY GLU HIS SEQRES 2 A 426 THR GLY GLN SER ALA ALA ALA THR MET PRO LEU ASP SER SEQRES 3 A 426 ILE ASP VAL SER ILE PRO GLU LEU PHE TYR ASN ASP SER SEQRES 4 A 426 VAL GLY GLU TYR PHE LYS ARG LEU ARG LYS ASP ASP PRO SEQRES 5 A 426 VAL HIS TYR CYS ALA ASP SER ALA PHE GLY PRO TYR TRP SEQRES 6 A 426 SER ILE THR LYS TYR ASN ASP ILE MET HIS VAL ASP THR SEQRES 7 A 426 ASN HIS ASP ILE PHE SER SER ASP ALA GLY TYR GLY GLY SEQRES 8 A 426 ILE ILE ILE ASP ASP GLY ILE GLN LYS GLY GLY ASP GLY SEQRES 9 A 426 GLY LEU ASP LEU PRO ASN PHE ILE ALA MET ASP ARG PRO SEQRES 10 A 426 ARG HIS ASP GLU GLN ARG LYS ALA VAL SER PRO ILE VAL SEQRES 11 A 426 ALA PRO ALA ASN LEU ALA ALA LEU GLU GLY THR ILE ARG SEQRES 12 A 426 GLU ARG VAL SER LYS THR LEU ASP GLY LEU PRO VAL GLY SEQRES 13 A 426 GLU GLU PHE ASP TRP VAL ASP ARG VAL SER ILE GLU ILE SEQRES 14 A 426 THR THR GLN MET LEU ALA THR LEU PHE ASP PHE PRO PHE SEQRES 15 A 426 GLU GLU ARG ARG LYS LEU THR ARG TRP SER ASP VAL THR SEQRES 16 A 426 THR ALA ALA PRO GLY GLY GLY VAL VAL GLU SER TRP ASP SEQRES 17 A 426 GLN ARG LYS THR GLU LEU LEU GLU CYS ALA ALA TYR PHE SEQRES 18 A 426 GLN VAL LEU TRP ASN GLU ARG VAL ASN LYS ASP PRO GLY SEQRES 19 A 426 ASN ASP LEU ILE SER MET LEU ALA HIS SER PRO ALA THR SEQRES 20 A 426 ARG ASN MET THR PRO GLU GLU TYR LEU GLY ASN VAL LEU SEQRES 21 A 426 LEU LEU ILE VAL GLY GLY ASN ASP THR THR ARG ASN SER SEQRES 22 A 426 MET THR GLY GLY VAL LEU ALA LEU HIS LYS ASN PRO ASP SEQRES 23 A 426 GLN PHE ALA LYS LEU LYS ALA ASN PRO ALA LEU VAL GLU SEQRES 24 A 426 THR MET VAL PRO GLU ILE ILE ARG TRP GLN THR PRO LEU SEQRES 25 A 426 ALA HIS MET ARG ARG THR ALA ILE ALA ASP SER GLU LEU SEQRES 26 A 426 GLY GLY LYS THR ILE ARG LYS GLY ASP LYS VAL VAL MET SEQRES 27 A 426 TRP TYR TYR SER GLY ASN ARG ASP ASP GLU VAL ILE ASP SEQRES 28 A 426 ARG PRO GLU GLU PHE ILE ILE ASP ARG PRO ARG PRO ARG SEQRES 29 A 426 GLN HIS LEU SER PHE GLY PHE GLY ILE HIS ARG CYS VAL SEQRES 30 A 426 GLY ASN ARG LEU ALA GLU MET GLN LEU ARG ILE LEU TRP SEQRES 31 A 426 GLU GLU ILE LEU THR ARG PHE SER ARG ILE GLU VAL MET SEQRES 32 A 426 ALA GLU PRO GLU ARG VAL ARG SER ASN PHE VAL ARG GLY SEQRES 33 A 426 TYR ALA LYS MET MET VAL ARG VAL HIS ALA HET HEM A 417 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 HOH *278(H2 O) HELIX 1 1 PRO A 13 ILE A 17 5 5 HELIX 2 2 ILE A 21 ASN A 27 1 7 HELIX 3 3 SER A 29 ASP A 41 1 13 HELIX 4 4 LYS A 59 ASN A 69 1 11 HELIX 5 5 ASP A 76 GLY A 80 5 5 HELIX 6 6 ASN A 100 MET A 104 5 5 HELIX 7 7 PRO A 107 SER A 117 1 11 HELIX 8 8 PRO A 118 VAL A 120 5 3 HELIX 9 9 ALA A 121 GLY A 142 1 22 HELIX 10 10 TRP A 151 VAL A 155 1 5 HELIX 11 11 VAL A 155 ASP A 169 1 15 HELIX 12 12 PRO A 171 GLU A 174 5 4 HELIX 13 13 ARG A 175 THR A 186 1 12 HELIX 14 14 SER A 196 ASN A 220 1 25 HELIX 15 15 ASP A 226 SER A 234 1 9 HELIX 16 16 PRO A 235 MET A 240 5 6 HELIX 17 17 THR A 241 ASN A 274 1 34 HELIX 18 18 ASN A 274 ASN A 284 1 11 HELIX 19 19 LEU A 287 THR A 300 1 14 HELIX 20 20 TRP A 329 ASN A 334 1 6 HELIX 21 21 GLY A 368 THR A 385 1 18 SHEET 1 A 5 VAL A 43 CYS A 46 0 SHEET 2 A 5 TYR A 54 ILE A 57 -1 O SER A 56 N HIS A 44 SHEET 3 A 5 LYS A 325 MET A 328 1 O VAL A 327 N ILE A 57 SHEET 4 A 5 MET A 305 ALA A 309 -1 N ARG A 307 O VAL A 326 SHEET 5 A 5 PHE A 73 SER A 74 -1 N SER A 74 O THR A 308 SHEET 1 B 3 PHE A 149 ASP A 150 0 SHEET 2 B 3 MET A 411 HIS A 415 -1 O VAL A 412 N PHE A 149 SHEET 3 B 3 ARG A 389 VAL A 392 -1 N GLU A 391 O ARG A 413 SHEET 1 C 2 SER A 313 LEU A 315 0 SHEET 2 C 2 LYS A 318 ILE A 320 -1 O ILE A 320 N SER A 313 SHEET 1 D 2 GLU A 397 ARG A 398 0 SHEET 2 D 2 TYR A 407 LYS A 409 -1 O ALA A 408 N GLU A 397 LINK SG CYS A 366 FE HEM A 417 1555 1555 2.28 LINK FE HEM A 417 O HOH A 644 1555 1555 2.49 CISPEP 1 ARG A 106 PRO A 107 0 -0.35 SITE 1 AC1 23 ASP A 67 PHE A 101 ILE A 102 HIS A 109 SITE 2 AC1 23 ARG A 113 LEU A 252 GLY A 255 GLY A 256 SITE 3 AC1 23 THR A 259 SER A 263 ARG A 307 TYR A 330 SITE 4 AC1 23 SER A 358 PHE A 359 GLY A 360 PHE A 361 SITE 5 AC1 23 ILE A 363 HIS A 364 CYS A 366 VAL A 367 SITE 6 AC1 23 GLY A 368 HOH A 637 HOH A 644 CRYST1 112.604 112.604 41.964 90.00 90.00 120.00 P 31 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008881 0.005127 0.000000 0.00000 SCALE2 0.000000 0.010255 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023830 0.00000