HEADER HYDROLASE 11-MAY-11 3RZE TITLE STRUCTURE OF THE HUMAN HISTAMINE H1 RECEPTOR IN COMPLEX WITH DOXEPIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTAMINE H1 RECEPTOR, LYSOZYME CHIMERA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H1R, HH1R, ENDOLYSIN, LYSIS PROTEIN, MURAMIDASE; COMPND 5 EC: 3.2.1.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 10665; SOURCE 5 GENE: HRH1, E; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SMD1163; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPIC9K KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MEMBRANE PROTEIN, GPCR NETWORK, KEYWDS 2 GPCR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.SHIMAMURA,G.W.HAN,M.SHIROISHI,S.WEYAND,H.TSUJIMOTO,G.WINTER, AUTHOR 2 V.KATRITCH,R.ABAGYAN,V.CHEREZOV,W.LIU,T.KOBAYASHI,R.STEVENS,S.IWATA, AUTHOR 3 GPCR NETWORK (GPCR) REVDAT 7 13-SEP-23 3RZE 1 REMARK SEQADV REVDAT 6 24-JAN-18 3RZE 1 AUTHOR REVDAT 5 16-AUG-17 3RZE 1 SOURCE REMARK REVDAT 4 20-JUL-11 3RZE 1 JRNL REVDAT 3 13-JUL-11 3RZE 1 JRNL REVDAT 2 22-JUN-11 3RZE 1 JRNL REVDAT 1 15-JUN-11 3RZE 0 JRNL AUTH T.SHIMAMURA,M.SHIROISHI,S.WEYAND,H.TSUJIMOTO,G.WINTER, JRNL AUTH 2 V.KATRITCH,R.ABAGYAN,V.CHEREZOV,W.LIU,G.W.HAN,T.KOBAYASHI, JRNL AUTH 3 R.C.STEVENS,S.IWATA JRNL TITL STRUCTURE OF THE HUMAN HISTAMINE H1 RECEPTOR COMPLEX WITH JRNL TITL 2 DOXEPIN. JRNL REF NATURE V. 475 65 2011 JRNL REFN ISSN 0028-0836 JRNL PMID 21697825 JRNL DOI 10.1038/NATURE10236 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 11996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.640 REMARK 3 FREE R VALUE TEST SET COUNT : 797 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.40 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2834 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2369 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2636 REMARK 3 BIN R VALUE (WORKING SET) : 0.2343 REMARK 3 BIN FREE R VALUE : 0.2706 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.99 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 198 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3481 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 89.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.12760 REMARK 3 B22 (A**2) : -8.12760 REMARK 3 B33 (A**2) : 16.25530 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.625 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.882 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.862 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3640 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4934 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1232 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 62 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 522 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3580 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 471 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4168 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.21 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.78 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 22.77 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|28 - A|485 } REMARK 3 ORIGIN FOR THE GROUP (A): 14.1334 33.5398 30.6388 REMARK 3 T TENSOR REMARK 3 T11: 0.2324 T22: 0.0944 REMARK 3 T33: -0.3040 T12: 0.0062 REMARK 3 T13: -0.0654 T23: 0.1063 REMARK 3 L TENSOR REMARK 3 L11: 1.4700 L22: 0.6106 REMARK 3 L33: 5.2307 L12: -0.2457 REMARK 3 L13: 0.6412 L23: -0.6945 REMARK 3 S TENSOR REMARK 3 S11: 0.1370 S12: 0.2784 S13: 0.0552 REMARK 3 S21: -0.3949 S22: 0.0854 S23: -0.1855 REMARK 3 S31: 0.1989 S32: -0.5442 S33: -0.2223 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|1002 - A|1161 } REMARK 3 ORIGIN FOR THE GROUP (A): 35.9671 17.0318 70.5261 REMARK 3 T TENSOR REMARK 3 T11: -0.1015 T22: -0.2329 REMARK 3 T33: 0.0710 T12: 0.0006 REMARK 3 T13: 0.0152 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 2.8613 L22: 1.6343 REMARK 3 L33: 1.3082 L12: 2.0242 REMARK 3 L13: -0.4496 L23: -0.2841 REMARK 3 S TENSOR REMARK 3 S11: -0.1723 S12: 0.1254 S13: -0.2560 REMARK 3 S21: -0.2881 S22: 0.0967 S23: -0.2262 REMARK 3 S31: 0.2478 S32: -0.0164 S33: 0.0756 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RZE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065566. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97780 REMARK 200 MONOCHROMATOR : ACCEL FIXED EXIT DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12152 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 34.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.83000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2RH1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26-30% PEG400, 300MM AMMONIUM REMARK 280 PHOSPHATE, 10MM MGCL2, 100MM NA-CITRATE PH 4.5, 1MM DOXEPIN, REMARK 280 LIPIDIC CUBIC PHASE, 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.07200 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.07200 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 165.82700 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 44.07200 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 44.07200 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 165.82700 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.07200 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 44.07200 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 165.82700 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 44.07200 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.07200 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 165.82700 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 44.07200 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.07200 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 165.82700 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.07200 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.07200 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 165.82700 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 44.07200 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 44.07200 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 165.82700 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.07200 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.07200 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 165.82700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 20 REMARK 465 THR A 21 REMARK 465 MET A 22 REMARK 465 ALA A 23 REMARK 465 SER A 24 REMARK 465 PRO A 25 REMARK 465 GLN A 26 REMARK 465 LEU A 27 REMARK 465 PHE A 168 REMARK 465 MET A 169 REMARK 465 GLN A 170 REMARK 465 GLN A 171 REMARK 465 THR A 172 REMARK 465 SER A 173 REMARK 465 VAL A 174 REMARK 465 ARG A 486 REMARK 465 SER A 487 REMARK 465 GLY A 488 REMARK 465 GLU A 489 REMARK 465 ASN A 490 REMARK 465 LEU A 491 REMARK 465 TYR A 492 REMARK 465 PHE A 493 REMARK 465 GLN A 494 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 442 CG CD CE NZ REMARK 470 ARG A 481 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 135 6.02 -65.24 REMARK 500 LYS A 137 27.01 81.62 REMARK 500 ARG A 139 77.73 -104.15 REMARK 500 LYS A 179 -148.77 -150.40 REMARK 500 GLU A 181 118.26 86.99 REMARK 500 ASP A 183 -26.17 73.98 REMARK 500 PHE A 199 -64.11 -135.84 REMARK 500 GLN A 219 -77.92 -125.61 REMARK 500 CYS A 221 176.98 38.12 REMARK 500 LYS A 442 21.77 92.28 REMARK 500 ASN A 443 56.01 107.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 1205 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5EH A 1200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D7V A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 1205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GPCR-53 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN IS A FUSION PROTEIN WITH RESIDUES ASN1002-TYR1161 OF T4 REMARK 999 LYSOZYME INSERTED BETWEEN CYS221 AND LEU450 OF H1. DBREF 3RZE A 20 221 UNP P35367 HRH1_HUMAN 20 221 DBREF 3RZE A 1002 1161 UNP P00720 LYS_BPT4 2 161 DBREF 3RZE A 405 487 UNP P35367 HRH1_HUMAN 405 487 SEQADV 3RZE THR A 1054 UNP P00720 CYS 54 ENGINEERED MUTATION SEQADV 3RZE ALA A 1097 UNP P00720 CYS 97 ENGINEERED MUTATION SEQADV 3RZE GLY A 488 UNP P35367 EXPRESSION TAG SEQADV 3RZE GLU A 489 UNP P35367 EXPRESSION TAG SEQADV 3RZE ASN A 490 UNP P35367 EXPRESSION TAG SEQADV 3RZE LEU A 491 UNP P35367 EXPRESSION TAG SEQADV 3RZE TYR A 492 UNP P35367 EXPRESSION TAG SEQADV 3RZE PHE A 493 UNP P35367 EXPRESSION TAG SEQADV 3RZE GLN A 494 UNP P35367 EXPRESSION TAG SEQRES 1 A 452 THR THR MET ALA SER PRO GLN LEU MET PRO LEU VAL VAL SEQRES 2 A 452 VAL LEU SER THR ILE CYS LEU VAL THR VAL GLY LEU ASN SEQRES 3 A 452 LEU LEU VAL LEU TYR ALA VAL ARG SER GLU ARG LYS LEU SEQRES 4 A 452 HIS THR VAL GLY ASN LEU TYR ILE VAL SER LEU SER VAL SEQRES 5 A 452 ALA ASP LEU ILE VAL GLY ALA VAL VAL MET PRO MET ASN SEQRES 6 A 452 ILE LEU TYR LEU LEU MET SER LYS TRP SER LEU GLY ARG SEQRES 7 A 452 PRO LEU CYS LEU PHE TRP LEU SER MET ASP TYR VAL ALA SEQRES 8 A 452 SER THR ALA SER ILE PHE SER VAL PHE ILE LEU CYS ILE SEQRES 9 A 452 ASP ARG TYR ARG SER VAL GLN GLN PRO LEU ARG TYR LEU SEQRES 10 A 452 LYS TYR ARG THR LYS THR ARG ALA SER ALA THR ILE LEU SEQRES 11 A 452 GLY ALA TRP PHE LEU SER PHE LEU TRP VAL ILE PRO ILE SEQRES 12 A 452 LEU GLY TRP ASN HIS PHE MET GLN GLN THR SER VAL ARG SEQRES 13 A 452 ARG GLU ASP LYS CYS GLU THR ASP PHE TYR ASP VAL THR SEQRES 14 A 452 TRP PHE LYS VAL MET THR ALA ILE ILE ASN PHE TYR LEU SEQRES 15 A 452 PRO THR LEU LEU MET LEU TRP PHE TYR ALA LYS ILE TYR SEQRES 16 A 452 LYS ALA VAL ARG GLN HIS CYS ASN ILE PHE GLU MET LEU SEQRES 17 A 452 ARG ILE ASP GLU GLY LEU ARG LEU LYS ILE TYR LYS ASP SEQRES 18 A 452 THR GLU GLY TYR TYR THR ILE GLY ILE GLY HIS LEU LEU SEQRES 19 A 452 THR LYS SER PRO SER LEU ASN ALA ALA LYS SER GLU LEU SEQRES 20 A 452 ASP LYS ALA ILE GLY ARG ASN THR ASN GLY VAL ILE THR SEQRES 21 A 452 LYS ASP GLU ALA GLU LYS LEU PHE ASN GLN ASP VAL ASP SEQRES 22 A 452 ALA ALA VAL ARG GLY ILE LEU ARG ASN ALA LYS LEU LYS SEQRES 23 A 452 PRO VAL TYR ASP SER LEU ASP ALA VAL ARG ARG ALA ALA SEQRES 24 A 452 LEU ILE ASN MET VAL PHE GLN MET GLY GLU THR GLY VAL SEQRES 25 A 452 ALA GLY PHE THR ASN SER LEU ARG MET LEU GLN GLN LYS SEQRES 26 A 452 ARG TRP ASP GLU ALA ALA VAL ASN LEU ALA LYS SER ARG SEQRES 27 A 452 TRP TYR ASN GLN THR PRO ASN ARG ALA LYS ARG VAL ILE SEQRES 28 A 452 THR THR PHE ARG THR GLY THR TRP ASP ALA TYR LEU HIS SEQRES 29 A 452 MET ASN ARG GLU ARG LYS ALA ALA LYS GLN LEU GLY PHE SEQRES 30 A 452 ILE MET ALA ALA PHE ILE LEU CYS TRP ILE PRO TYR PHE SEQRES 31 A 452 ILE PHE PHE MET VAL ILE ALA PHE CYS LYS ASN CYS CYS SEQRES 32 A 452 ASN GLU HIS LEU HIS MET PHE THR ILE TRP LEU GLY TYR SEQRES 33 A 452 ILE ASN SER THR LEU ASN PRO LEU ILE TYR PRO LEU CYS SEQRES 34 A 452 ASN GLU ASN PHE LYS LYS THR PHE LYS ARG ILE LEU HIS SEQRES 35 A 452 ILE ARG SER GLY GLU ASN LEU TYR PHE GLN HET 5EH A1200 21 HET D7V A1201 21 HET PO4 A1202 5 HET PO4 A1203 5 HET PO4 A1204 5 HET OLC A1205 15 HETNAM 5EH (3E)-3-(DIBENZO[B,E]OXEPIN-11(6H)-YLIDENE)-N,N- HETNAM 2 5EH DIMETHYLPROPAN-1-AMINE HETNAM D7V (3Z)-3-(DIBENZO[B,E]OXEPIN-11(6H)-YLIDENE)-N,N- HETNAM 2 D7V DIMETHYLPROPAN-1-AMINE HETNAM PO4 PHOSPHATE ION HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 5EH C19 H21 N O FORMUL 3 D7V C19 H21 N O FORMUL 4 PO4 3(O4 P 3-) FORMUL 7 OLC C21 H40 O4 FORMUL 8 HOH *2(H2 O) HELIX 1 1 MET A 28 VAL A 31 5 4 HELIX 2 2 VAL A 32 GLU A 55 1 24 HELIX 3 3 THR A 60 GLY A 62 5 3 HELIX 4 4 ASN A 63 VAL A 79 1 17 HELIX 5 5 VAL A 79 MET A 90 1 12 HELIX 6 6 LEU A 95 GLN A 131 1 37 HELIX 7 7 THR A 140 PHE A 156 1 17 HELIX 8 8 TRP A 158 GLY A 164 1 7 HELIX 9 9 VAL A 187 PHE A 199 1 13 HELIX 10 10 PHE A 199 VAL A 217 1 19 HELIX 11 11 ASN A 1002 GLY A 1012 1 11 HELIX 12 12 SER A 1038 GLY A 1051 1 14 HELIX 13 13 THR A 1059 ARG A 1080 1 22 HELIX 14 14 LEU A 1084 LEU A 1091 1 8 HELIX 15 15 ASP A 1092 GLY A 1107 1 16 HELIX 16 16 GLY A 1107 ALA A 1112 1 6 HELIX 17 17 PHE A 1114 GLN A 1123 1 10 HELIX 18 18 ARG A 1125 ALA A 1134 1 10 HELIX 19 19 SER A 1136 THR A 1142 1 7 HELIX 20 20 THR A 1142 GLY A 1156 1 15 HELIX 21 21 TRP A 1158 LEU A 405 5 5 HELIX 22 22 MET A 407 LYS A 442 1 36 HELIX 23 23 LEU A 449 ASN A 472 1 24 HELIX 24 24 ASN A 472 HIS A 484 1 13 SHEET 1 A 3 LEU A1013 LYS A1019 0 SHEET 2 A 3 TYR A1025 ILE A1029 -1 O THR A1026 N TYR A1018 SHEET 3 A 3 HIS A1031 LEU A1032 -1 O HIS A1031 N ILE A1027 SSBOND 1 CYS A 100 CYS A 180 1555 1555 2.03 SSBOND 2 CYS A 441 CYS A 444 1555 1555 2.03 SITE 1 AC1 9 ASP A 107 TYR A 108 SER A 111 THR A 112 SITE 2 AC1 9 TRP A 158 TRP A 428 TYR A 431 PHE A 432 SITE 3 AC1 9 TYR A 458 SITE 1 AC2 12 ASP A 107 TYR A 108 SER A 111 THR A 112 SITE 2 AC2 12 ILE A 115 TRP A 158 ASN A 198 TRP A 428 SITE 3 AC2 12 TYR A 431 PHE A 432 PHE A 435 TYR A 458 SITE 1 AC3 6 ASP A 178 LYS A 179 LYS A 191 TYR A 431 SITE 2 AC3 6 PHE A 435 HIS A 450 SITE 1 AC4 2 ARG A1076 ARG A1080 SITE 1 AC5 4 THR A1142 PRO A1143 ASN A1144 ARG A1145 SITE 1 AC6 4 GLU A1011 ARG A1014 ASN A1053 ASN A1055 CRYST1 88.144 88.144 331.654 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011345 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011345 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003015 0.00000