data_3RZG # _entry.id 3RZG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3RZG pdb_00003rzg 10.2210/pdb3rzg/pdb NDB NA1133 ? ? RCSB RCSB065568 ? ? WWPDB D_1000065568 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3RZH . unspecified PDB 3RZJ . unspecified PDB 3RZK . unspecified PDB 3RZL . unspecified PDB 3RZM . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3RZG _pdbx_database_status.recvd_initial_deposition_date 2011-05-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yi, C.' 1 'Chen, B.' 2 'Qi, B.' 3 'Zhang, W.' 4 'Jia, G.' 5 'Zhang, L.' 6 'Li, C.' 7 'Dinner, A.' 8 'Yang, C.' 9 'He, C.' 10 # _citation.id primary _citation.title 'Duplex interrogation by a direct DNA repair protein in search of base damage' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 19 _citation.page_first 671 _citation.page_last 676 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22659876 _citation.pdbx_database_id_DOI 10.1038/nsmb.2320 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yi, C.' 1 ? primary 'Chen, B.' 2 ? primary 'Qi, B.' 3 ? primary 'Zhang, W.' 4 ? primary 'Jia, G.' 5 ? primary 'Zhang, L.' 6 ? primary 'Li, C.J.' 7 ? primary 'Dinner, A.R.' 8 ? primary 'Yang, C.G.' 9 ? primary 'He, C.' 10 ? # _cell.entry_id 3RZG _cell.length_a 46.149 _cell.length_b 60.980 _cell.length_c 65.209 _cell.angle_alpha 90.00 _cell.angle_beta 89.23 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3RZG _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2' 23757.180 1 1.14.11.- 'C67S, C165S, G169C, C192S' 'UNP RESIDUES 56-261' ? 2 polymer syn "5'-D(*CP*TP*GP*TP*CP*AP*TP*CP*AP*CP*TP*GP*CP*G)-3'" 4231.753 1 ? ? ? ? 3 polymer syn "5'-D(*TP*CP*GP*CP*AP*GP*TP*GP*AP*TP*GP*AP*CP*A)-3'" 4304.816 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 non-polymer syn propane-1-thiol 76.161 1 ? ? ? ? 6 water nat water 18.015 307 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Alkylated DNA repair protein alkB homolog 2, Oxy DC1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSMSWRHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPK PWIPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICEHRDDERDLAPGSPIASVSFGASRDFVFRHKDSRGKSPSRRVA VVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLTKK ; ;GSMSWRHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPK PWIPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICEHRDDERDLAPGSPIASVSFGASRDFVFRHKDSRGKSPSRRVA VVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLTKK ; A ? 2 polydeoxyribonucleotide no no '(DC)(DT)(DG)(DT)(DC)(DA)(DT)(DC)(DA)(DC)(DT)(DG)(DC)(DG)' CTGTCATCACTGCG B ? 3 polydeoxyribonucleotide no no '(DT)(DC)(DG)(DC)(DA)(DG)(DT)(DG)(DA)(DT)(DG)(DA)(DC)(DA)' TCGCAGTGATGACA C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 MET n 1 4 SER n 1 5 TRP n 1 6 ARG n 1 7 HIS n 1 8 ILE n 1 9 ARG n 1 10 ALA n 1 11 GLU n 1 12 GLY n 1 13 LEU n 1 14 ASP n 1 15 SER n 1 16 SER n 1 17 TYR n 1 18 THR n 1 19 VAL n 1 20 LEU n 1 21 PHE n 1 22 GLY n 1 23 LYS n 1 24 ALA n 1 25 GLU n 1 26 ALA n 1 27 ASP n 1 28 GLU n 1 29 ILE n 1 30 PHE n 1 31 GLN n 1 32 GLU n 1 33 LEU n 1 34 GLU n 1 35 LYS n 1 36 GLU n 1 37 VAL n 1 38 GLU n 1 39 TYR n 1 40 PHE n 1 41 THR n 1 42 GLY n 1 43 ALA n 1 44 LEU n 1 45 ALA n 1 46 ARG n 1 47 VAL n 1 48 GLN n 1 49 VAL n 1 50 PHE n 1 51 GLY n 1 52 LYS n 1 53 TRP n 1 54 HIS n 1 55 SER n 1 56 VAL n 1 57 PRO n 1 58 ARG n 1 59 LYS n 1 60 GLN n 1 61 ALA n 1 62 THR n 1 63 TYR n 1 64 GLY n 1 65 ASP n 1 66 ALA n 1 67 GLY n 1 68 LEU n 1 69 THR n 1 70 TYR n 1 71 THR n 1 72 PHE n 1 73 SER n 1 74 GLY n 1 75 LEU n 1 76 THR n 1 77 LEU n 1 78 SER n 1 79 PRO n 1 80 LYS n 1 81 PRO n 1 82 TRP n 1 83 ILE n 1 84 PRO n 1 85 VAL n 1 86 LEU n 1 87 GLU n 1 88 ARG n 1 89 ILE n 1 90 ARG n 1 91 ASP n 1 92 HIS n 1 93 VAL n 1 94 SER n 1 95 GLY n 1 96 VAL n 1 97 THR n 1 98 GLY n 1 99 GLN n 1 100 THR n 1 101 PHE n 1 102 ASN n 1 103 PHE n 1 104 VAL n 1 105 LEU n 1 106 ILE n 1 107 ASN n 1 108 ARG n 1 109 TYR n 1 110 LYS n 1 111 ASP n 1 112 GLY n 1 113 SER n 1 114 ASP n 1 115 HIS n 1 116 ILE n 1 117 CYS n 1 118 GLU n 1 119 HIS n 1 120 ARG n 1 121 ASP n 1 122 ASP n 1 123 GLU n 1 124 ARG n 1 125 ASP n 1 126 LEU n 1 127 ALA n 1 128 PRO n 1 129 GLY n 1 130 SER n 1 131 PRO n 1 132 ILE n 1 133 ALA n 1 134 SER n 1 135 VAL n 1 136 SER n 1 137 PHE n 1 138 GLY n 1 139 ALA n 1 140 SER n 1 141 ARG n 1 142 ASP n 1 143 PHE n 1 144 VAL n 1 145 PHE n 1 146 ARG n 1 147 HIS n 1 148 LYS n 1 149 ASP n 1 150 SER n 1 151 ARG n 1 152 GLY n 1 153 LYS n 1 154 SER n 1 155 PRO n 1 156 SER n 1 157 ARG n 1 158 ARG n 1 159 VAL n 1 160 ALA n 1 161 VAL n 1 162 VAL n 1 163 ARG n 1 164 LEU n 1 165 PRO n 1 166 LEU n 1 167 ALA n 1 168 HIS n 1 169 GLY n 1 170 SER n 1 171 LEU n 1 172 LEU n 1 173 MET n 1 174 MET n 1 175 ASN n 1 176 HIS n 1 177 PRO n 1 178 THR n 1 179 ASN n 1 180 THR n 1 181 HIS n 1 182 TRP n 1 183 TYR n 1 184 HIS n 1 185 SER n 1 186 LEU n 1 187 PRO n 1 188 VAL n 1 189 ARG n 1 190 LYS n 1 191 LYS n 1 192 VAL n 1 193 LEU n 1 194 ALA n 1 195 PRO n 1 196 ARG n 1 197 VAL n 1 198 ASN n 1 199 LEU n 1 200 THR n 1 201 PHE n 1 202 ARG n 1 203 LYS n 1 204 ILE n 1 205 LEU n 1 206 LEU n 1 207 THR n 1 208 LYS n 1 209 LYS n 2 1 DC n 2 2 DT n 2 3 DG n 2 4 DT n 2 5 DC n 2 6 DA n 2 7 DT n 2 8 DC n 2 9 DA n 2 10 DC n 2 11 DT n 2 12 DG n 2 13 DC n 2 14 DG n 3 1 DT n 3 2 DC n 3 3 DG n 3 4 DC n 3 5 DA n 3 6 DG n 3 7 DT n 3 8 DG n 3 9 DA n 3 10 DT n 3 11 DG n 3 12 DA n 3 13 DC n 3 14 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ALKBH2, ABH2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ALKB2_HUMAN Q6NS38 1 ;SWRHIRAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWI PVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDSRGKSPSRRVAVVR LPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLTKK ; 56 ? 2 PDB 3RZG 3RZG 2 ? ? ? 3 PDB 3RZG 3RZG 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3RZG A 4 ? 209 ? Q6NS38 56 ? 261 ? 56 261 2 2 3RZG B 1 ? 14 ? 3RZG 258 ? 271 ? 258 271 3 3 3RZG C 1 ? 14 ? 3RZG 272 ? 285 ? 272 285 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3RZG GLY A 1 ? UNP Q6NS38 ? ? 'expression tag' 53 1 1 3RZG SER A 2 ? UNP Q6NS38 ? ? 'expression tag' 54 2 1 3RZG MET A 3 ? UNP Q6NS38 ? ? 'expression tag' 55 3 1 3RZG SER A 15 ? UNP Q6NS38 CYS 67 'engineered mutation' 67 4 1 3RZG SER A 113 ? UNP Q6NS38 CYS 165 'engineered mutation' 165 5 1 3RZG CYS A 117 ? UNP Q6NS38 GLY 169 'engineered mutation' 169 6 1 3RZG ASP A 125 ? UNP Q6NS38 GLU 177 'engineered mutation' 177 7 1 3RZG SER A 140 ? UNP Q6NS38 CYS 192 'engineered mutation' 192 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 XL3 non-polymer . propane-1-thiol ? 'C3 H8 S' 76.161 # _exptl.entry_id 3RZG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.84 _exptl_crystal.density_percent_sol 56.70 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;12% PEG 8000, 0.1M sodium chloride, 0.05M magnesium chloride, 0.1M cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 200.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2007-07-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3RZG _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F 2.2 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.58 _reflns.number_obs 48714 _reflns.number_all ? _reflns.percent_possible_obs 94.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.58 _reflns_shell.d_res_low 1.65 _reflns_shell.percent_possible_all 94.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3RZG _refine.ls_number_reflns_obs 43430 _refine.ls_number_reflns_all 43727 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.2 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.62 _refine.ls_percent_reflns_obs 99.32 _refine.ls_R_factor_obs 0.20242 _refine.ls_R_factor_all 0.20242 _refine.ls_R_factor_R_work 0.20136 _refine.ls_R_factor_R_free 0.22250 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 2325 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.953 _refine.B_iso_mean 26.224 _refine.aniso_B[1][1] 0.85 _refine.aniso_B[2][2] -0.14 _refine.aniso_B[3][3] -0.71 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.11 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 3BTX _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.090 _refine.overall_SU_ML 0.055 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.364 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1642 _refine_hist.pdbx_number_atoms_nucleic_acid 566 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 307 _refine_hist.number_atoms_total 2525 _refine_hist.d_res_high 1.62 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.006 0.021 ? 2391 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.191 2.248 ? 3360 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.218 5.000 ? 217 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 31.652 21.358 ? 81 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 12.552 15.000 ? 293 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 18.036 15.000 ? 19 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.071 0.200 ? 362 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.005 0.021 ? 1650 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 0.546 1.500 ? 1060 ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1.028 2.000 ? 1722 ? 'X-RAY DIFFRACTION' r_scbond_it 1.333 3.000 ? 1331 ? 'X-RAY DIFFRACTION' r_scangle_it 2.230 4.500 ? 1638 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.620 _refine_ls_shell.d_res_low 1.662 _refine_ls_shell.number_reflns_R_work 3159 _refine_ls_shell.R_factor_R_work 0.314 _refine_ls_shell.percent_reflns_obs 99.43 _refine_ls_shell.R_factor_R_free 0.326 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 177 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3RZG _struct.title 'Duplex Interrogation by a Direct DNA Repair Protein in the Search of Damage' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3RZG _struct_keywords.pdbx_keywords OXIDOREDUCTASE/DNA _struct_keywords.text 'PROTEIN-DNA COMPLEX, jelly-roll, demethylase, Nucleus, OXIDOREDUCTASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? H N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 22 ? VAL A 37 ? GLY A 74 VAL A 89 1 ? 16 HELX_P HELX_P2 2 THR A 41 ? LEU A 44 ? THR A 93 LEU A 96 5 ? 4 HELX_P HELX_P3 3 ILE A 83 ? GLY A 98 ? ILE A 135 GLY A 150 1 ? 16 HELX_P HELX_P4 4 ASP A 149 ? ARG A 151 ? ASP A 201 ARG A 203 5 ? 3 HELX_P HELX_P5 5 PRO A 177 ? HIS A 181 ? PRO A 229 HIS A 233 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A CYS 117 SG ? ? ? 1_555 E XL3 . SG ? ? A CYS 169 B XL3 1 1_555 ? ? ? ? ? ? ? 2.036 ? ? covale2 covale none ? E XL3 . CA ? ? ? 1_555 B DC 10 N4 ? ? B XL3 1 B DC 267 1_555 ? ? ? ? ? ? ? 1.473 ? ? hydrog1 hydrog ? ? B DT 2 N3 ? ? ? 1_555 C DA 14 N1 ? ? B DT 259 C DA 285 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DT 2 O4 ? ? ? 1_555 C DA 14 N6 ? ? B DT 259 C DA 285 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 13 N3 ? ? B DG 260 C DC 284 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 13 O2 ? ? B DG 260 C DC 284 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 13 N4 ? ? B DG 260 C DC 284 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 12 N1 ? ? B DT 261 C DA 283 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 12 N6 ? ? B DT 261 C DA 283 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 11 N1 ? ? B DC 262 C DG 282 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 11 O6 ? ? B DC 262 C DG 282 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 11 N2 ? ? B DC 262 C DG 282 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 10 N3 ? ? B DA 263 C DT 281 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 10 O4 ? ? B DA 263 C DT 281 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DT 7 N3 ? ? ? 1_555 C DA 9 N1 ? ? B DT 264 C DA 280 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DT 7 O4 ? ? ? 1_555 C DA 9 N6 ? ? B DT 264 C DA 280 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 8 N1 ? ? B DC 265 C DG 279 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DG 8 O6 ? ? B DC 265 C DG 279 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 8 N2 ? ? B DC 265 C DG 279 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DA 9 N1 ? ? ? 1_555 C DT 7 N3 ? ? B DA 266 C DT 278 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DA 9 N6 ? ? ? 1_555 C DT 7 O4 ? ? B DA 266 C DT 278 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DC 10 N3 ? ? ? 1_555 C DG 6 N1 ? ? B DC 267 C DG 277 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C DG 6 O6 ? ? B DC 267 C DG 277 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DC 10 O2 ? ? ? 1_555 C DG 6 N2 ? ? B DC 267 C DG 277 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DT 11 N3 ? ? ? 1_555 C DA 5 N1 ? ? B DT 268 C DA 276 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DT 11 O4 ? ? ? 1_555 C DA 5 N6 ? ? B DT 268 C DA 276 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 12 N1 ? ? ? 1_555 C DC 4 N3 ? ? B DG 269 C DC 275 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 12 N2 ? ? ? 1_555 C DC 4 O2 ? ? B DG 269 C DC 275 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 12 O6 ? ? ? 1_555 C DC 4 N4 ? ? B DG 269 C DC 275 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DC 13 N3 ? ? ? 1_555 C DG 3 N1 ? ? B DC 270 C DG 274 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DC 13 N4 ? ? ? 1_555 C DG 3 O6 ? ? B DC 270 C DG 274 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DC 13 O2 ? ? ? 1_555 C DG 3 N2 ? ? B DC 270 C DG 274 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DG 14 N1 ? ? ? 1_555 C DC 2 N3 ? ? B DG 271 C DC 273 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DG 14 N2 ? ? ? 1_555 C DC 2 O2 ? ? B DG 271 C DC 273 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DG 14 O6 ? ? ? 1_555 C DC 2 N4 ? ? B DG 271 C DC 273 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id HIS _struct_mon_prot_cis.label_seq_id 176 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id HIS _struct_mon_prot_cis.auth_seq_id 228 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 177 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 229 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 6.41 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 2 ? C ? 2 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 6 ? ALA A 10 ? ARG A 58 ALA A 62 A 2 LEU A 13 ? VAL A 19 ? LEU A 65 VAL A 71 A 3 SER A 170 ? MET A 174 ? SER A 222 MET A 226 A 4 ILE A 132 ? GLY A 138 ? ILE A 184 GLY A 190 A 5 ARG A 196 ? ARG A 202 ? ARG A 248 ARG A 254 A 6 PHE A 103 ? TYR A 109 ? PHE A 155 TYR A 161 A 7 LYS A 59 ? GLY A 64 ? LYS A 111 GLY A 116 A 8 LYS A 80 ? PRO A 81 ? LYS A 132 PRO A 133 B 1 ARG A 46 ? VAL A 49 ? ARG A 98 VAL A 101 B 2 LYS A 52 ? SER A 55 ? LYS A 104 SER A 107 C 1 TYR A 70 ? THR A 71 ? TYR A 122 THR A 123 C 2 THR A 76 ? LEU A 77 ? THR A 128 LEU A 129 D 1 ILE A 116 ? HIS A 119 ? ILE A 168 HIS A 171 D 2 TRP A 182 ? LEU A 186 ? TRP A 234 LEU A 238 D 3 ARG A 141 ? HIS A 147 ? ARG A 193 HIS A 199 D 4 VAL A 162 ? LEU A 166 ? VAL A 214 LEU A 218 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 8 ? N ILE A 60 O SER A 15 ? O SER A 67 A 2 3 N THR A 18 ? N THR A 70 O LEU A 171 ? O LEU A 223 A 3 4 O MET A 174 ? O MET A 226 N ILE A 132 ? N ILE A 184 A 4 5 N VAL A 135 ? N VAL A 187 O LEU A 199 ? O LEU A 251 A 5 6 O ASN A 198 ? O ASN A 250 N ASN A 107 ? N ASN A 159 A 6 7 O ILE A 106 ? O ILE A 158 N ALA A 61 ? N ALA A 113 A 7 8 N THR A 62 ? N THR A 114 O LYS A 80 ? O LYS A 132 B 1 2 N VAL A 49 ? N VAL A 101 O LYS A 52 ? O LYS A 104 C 1 2 N TYR A 70 ? N TYR A 122 O LEU A 77 ? O LEU A 129 D 1 2 N HIS A 119 ? N HIS A 171 O HIS A 184 ? O HIS A 236 D 2 3 O TYR A 183 ? O TYR A 235 N ARG A 146 ? N ARG A 198 D 3 4 N PHE A 145 ? N PHE A 197 O VAL A 162 ? O VAL A 214 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 1 ? 7 'BINDING SITE FOR RESIDUE GOL A 1' AC2 Software B XL3 1 ? 3 'BINDING SITE FOR RESIDUE XL3 B 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HOH F . ? HOH A 11 . ? 1_555 ? 2 AC1 7 VAL A 56 ? VAL A 108 . ? 1_555 ? 3 AC1 7 ARG A 58 ? ARG A 110 . ? 1_555 ? 4 AC1 7 LYS A 110 ? LYS A 162 . ? 1_555 ? 5 AC1 7 ASP A 114 ? ASP A 166 . ? 1_555 ? 6 AC1 7 HOH F . ? HOH A 299 . ? 1_555 ? 7 AC1 7 HOH F . ? HOH A 316 . ? 1_555 ? 8 AC2 3 CYS A 117 ? CYS A 169 . ? 1_555 ? 9 AC2 3 DA B 9 ? DA B 266 . ? 1_555 ? 10 AC2 3 DC B 10 ? DC B 267 . ? 1_555 ? # _database_PDB_matrix.entry_id 3RZG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3RZG _atom_sites.fract_transf_matrix[1][1] 0.021669 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] -0.000291 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016399 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015337 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 53 ? ? ? A . n A 1 2 SER 2 54 ? ? ? A . n A 1 3 MET 3 55 55 MET MET A . n A 1 4 SER 4 56 56 SER SER A . n A 1 5 TRP 5 57 57 TRP TRP A . n A 1 6 ARG 6 58 58 ARG ARG A . n A 1 7 HIS 7 59 59 HIS HIS A . n A 1 8 ILE 8 60 60 ILE ILE A . n A 1 9 ARG 9 61 61 ARG ARG A . n A 1 10 ALA 10 62 62 ALA ALA A . n A 1 11 GLU 11 63 63 GLU GLU A . n A 1 12 GLY 12 64 64 GLY GLY A . n A 1 13 LEU 13 65 65 LEU LEU A . n A 1 14 ASP 14 66 66 ASP ASP A . n A 1 15 SER 15 67 67 SER SER A . n A 1 16 SER 16 68 68 SER SER A . n A 1 17 TYR 17 69 69 TYR TYR A . n A 1 18 THR 18 70 70 THR THR A . n A 1 19 VAL 19 71 71 VAL VAL A . n A 1 20 LEU 20 72 72 LEU LEU A . n A 1 21 PHE 21 73 73 PHE PHE A . n A 1 22 GLY 22 74 74 GLY GLY A . n A 1 23 LYS 23 75 75 LYS LYS A . n A 1 24 ALA 24 76 76 ALA ALA A . n A 1 25 GLU 25 77 77 GLU GLU A . n A 1 26 ALA 26 78 78 ALA ALA A . n A 1 27 ASP 27 79 79 ASP ASP A . n A 1 28 GLU 28 80 80 GLU GLU A . n A 1 29 ILE 29 81 81 ILE ILE A . n A 1 30 PHE 30 82 82 PHE PHE A . n A 1 31 GLN 31 83 83 GLN GLN A . n A 1 32 GLU 32 84 84 GLU GLU A . n A 1 33 LEU 33 85 85 LEU LEU A . n A 1 34 GLU 34 86 86 GLU GLU A . n A 1 35 LYS 35 87 87 LYS LYS A . n A 1 36 GLU 36 88 88 GLU GLU A . n A 1 37 VAL 37 89 89 VAL VAL A . n A 1 38 GLU 38 90 90 GLU GLU A . n A 1 39 TYR 39 91 91 TYR TYR A . n A 1 40 PHE 40 92 92 PHE PHE A . n A 1 41 THR 41 93 93 THR THR A . n A 1 42 GLY 42 94 94 GLY GLY A . n A 1 43 ALA 43 95 95 ALA ALA A . n A 1 44 LEU 44 96 96 LEU LEU A . n A 1 45 ALA 45 97 97 ALA ALA A . n A 1 46 ARG 46 98 98 ARG ARG A . n A 1 47 VAL 47 99 99 VAL VAL A . n A 1 48 GLN 48 100 100 GLN GLN A . n A 1 49 VAL 49 101 101 VAL VAL A . n A 1 50 PHE 50 102 102 PHE PHE A . n A 1 51 GLY 51 103 103 GLY GLY A . n A 1 52 LYS 52 104 104 LYS LYS A . n A 1 53 TRP 53 105 105 TRP TRP A . n A 1 54 HIS 54 106 106 HIS HIS A . n A 1 55 SER 55 107 107 SER SER A . n A 1 56 VAL 56 108 108 VAL VAL A . n A 1 57 PRO 57 109 109 PRO PRO A . n A 1 58 ARG 58 110 110 ARG ARG A . n A 1 59 LYS 59 111 111 LYS LYS A . n A 1 60 GLN 60 112 112 GLN GLN A . n A 1 61 ALA 61 113 113 ALA ALA A . n A 1 62 THR 62 114 114 THR THR A . n A 1 63 TYR 63 115 115 TYR TYR A . n A 1 64 GLY 64 116 116 GLY GLY A . n A 1 65 ASP 65 117 117 ASP ASP A . n A 1 66 ALA 66 118 118 ALA ALA A . n A 1 67 GLY 67 119 119 GLY GLY A . n A 1 68 LEU 68 120 120 LEU LEU A . n A 1 69 THR 69 121 121 THR THR A . n A 1 70 TYR 70 122 122 TYR TYR A . n A 1 71 THR 71 123 123 THR THR A . n A 1 72 PHE 72 124 124 PHE PHE A . n A 1 73 SER 73 125 125 SER SER A . n A 1 74 GLY 74 126 126 GLY GLY A . n A 1 75 LEU 75 127 127 LEU LEU A . n A 1 76 THR 76 128 128 THR THR A . n A 1 77 LEU 77 129 129 LEU LEU A . n A 1 78 SER 78 130 130 SER SER A . n A 1 79 PRO 79 131 131 PRO PRO A . n A 1 80 LYS 80 132 132 LYS LYS A . n A 1 81 PRO 81 133 133 PRO PRO A . n A 1 82 TRP 82 134 134 TRP TRP A . n A 1 83 ILE 83 135 135 ILE ILE A . n A 1 84 PRO 84 136 136 PRO PRO A . n A 1 85 VAL 85 137 137 VAL VAL A . n A 1 86 LEU 86 138 138 LEU LEU A . n A 1 87 GLU 87 139 139 GLU GLU A . n A 1 88 ARG 88 140 140 ARG ARG A . n A 1 89 ILE 89 141 141 ILE ILE A . n A 1 90 ARG 90 142 142 ARG ARG A . n A 1 91 ASP 91 143 143 ASP ASP A . n A 1 92 HIS 92 144 144 HIS HIS A . n A 1 93 VAL 93 145 145 VAL VAL A . n A 1 94 SER 94 146 146 SER SER A . n A 1 95 GLY 95 147 147 GLY GLY A . n A 1 96 VAL 96 148 148 VAL VAL A . n A 1 97 THR 97 149 149 THR THR A . n A 1 98 GLY 98 150 150 GLY GLY A . n A 1 99 GLN 99 151 151 GLN GLN A . n A 1 100 THR 100 152 152 THR THR A . n A 1 101 PHE 101 153 153 PHE PHE A . n A 1 102 ASN 102 154 154 ASN ASN A . n A 1 103 PHE 103 155 155 PHE PHE A . n A 1 104 VAL 104 156 156 VAL VAL A . n A 1 105 LEU 105 157 157 LEU LEU A . n A 1 106 ILE 106 158 158 ILE ILE A . n A 1 107 ASN 107 159 159 ASN ASN A . n A 1 108 ARG 108 160 160 ARG ARG A . n A 1 109 TYR 109 161 161 TYR TYR A . n A 1 110 LYS 110 162 162 LYS LYS A . n A 1 111 ASP 111 163 163 ASP ASP A . n A 1 112 GLY 112 164 164 GLY GLY A . n A 1 113 SER 113 165 165 SER SER A . n A 1 114 ASP 114 166 166 ASP ASP A . n A 1 115 HIS 115 167 167 HIS HIS A . n A 1 116 ILE 116 168 168 ILE ILE A . n A 1 117 CYS 117 169 169 CYS CYS A . n A 1 118 GLU 118 170 170 GLU GLU A . n A 1 119 HIS 119 171 171 HIS HIS A . n A 1 120 ARG 120 172 172 ARG ARG A . n A 1 121 ASP 121 173 173 ASP ASP A . n A 1 122 ASP 122 174 174 ASP ASP A . n A 1 123 GLU 123 175 175 GLU GLU A . n A 1 124 ARG 124 176 176 ARG ARG A . n A 1 125 ASP 125 177 177 ASP ASP A . n A 1 126 LEU 126 178 178 LEU LEU A . n A 1 127 ALA 127 179 179 ALA ALA A . n A 1 128 PRO 128 180 180 PRO PRO A . n A 1 129 GLY 129 181 181 GLY GLY A . n A 1 130 SER 130 182 182 SER SER A . n A 1 131 PRO 131 183 183 PRO PRO A . n A 1 132 ILE 132 184 184 ILE ILE A . n A 1 133 ALA 133 185 185 ALA ALA A . n A 1 134 SER 134 186 186 SER SER A . n A 1 135 VAL 135 187 187 VAL VAL A . n A 1 136 SER 136 188 188 SER SER A . n A 1 137 PHE 137 189 189 PHE PHE A . n A 1 138 GLY 138 190 190 GLY GLY A . n A 1 139 ALA 139 191 191 ALA ALA A . n A 1 140 SER 140 192 192 SER SER A . n A 1 141 ARG 141 193 193 ARG ARG A . n A 1 142 ASP 142 194 194 ASP ASP A . n A 1 143 PHE 143 195 195 PHE PHE A . n A 1 144 VAL 144 196 196 VAL VAL A . n A 1 145 PHE 145 197 197 PHE PHE A . n A 1 146 ARG 146 198 198 ARG ARG A . n A 1 147 HIS 147 199 199 HIS HIS A . n A 1 148 LYS 148 200 200 LYS LYS A . n A 1 149 ASP 149 201 201 ASP ASP A . n A 1 150 SER 150 202 202 SER SER A . n A 1 151 ARG 151 203 203 ARG ARG A . n A 1 152 GLY 152 204 204 GLY GLY A . n A 1 153 LYS 153 205 205 LYS LYS A . n A 1 154 SER 154 206 206 SER SER A . n A 1 155 PRO 155 207 207 PRO PRO A . n A 1 156 SER 156 208 208 SER SER A . n A 1 157 ARG 157 209 209 ARG ARG A . n A 1 158 ARG 158 210 210 ARG ARG A . n A 1 159 VAL 159 211 211 VAL VAL A . n A 1 160 ALA 160 212 212 ALA ALA A . n A 1 161 VAL 161 213 213 VAL VAL A . n A 1 162 VAL 162 214 214 VAL VAL A . n A 1 163 ARG 163 215 215 ARG ARG A . n A 1 164 LEU 164 216 216 LEU LEU A . n A 1 165 PRO 165 217 217 PRO PRO A . n A 1 166 LEU 166 218 218 LEU LEU A . n A 1 167 ALA 167 219 219 ALA ALA A . n A 1 168 HIS 168 220 220 HIS HIS A . n A 1 169 GLY 169 221 221 GLY GLY A . n A 1 170 SER 170 222 222 SER SER A . n A 1 171 LEU 171 223 223 LEU LEU A . n A 1 172 LEU 172 224 224 LEU LEU A . n A 1 173 MET 173 225 225 MET MET A . n A 1 174 MET 174 226 226 MET MET A . n A 1 175 ASN 175 227 227 ASN ASN A . n A 1 176 HIS 176 228 228 HIS HIS A . n A 1 177 PRO 177 229 229 PRO PRO A . n A 1 178 THR 178 230 230 THR THR A . n A 1 179 ASN 179 231 231 ASN ASN A . n A 1 180 THR 180 232 232 THR THR A . n A 1 181 HIS 181 233 233 HIS HIS A . n A 1 182 TRP 182 234 234 TRP TRP A . n A 1 183 TYR 183 235 235 TYR TYR A . n A 1 184 HIS 184 236 236 HIS HIS A . n A 1 185 SER 185 237 237 SER SER A . n A 1 186 LEU 186 238 238 LEU LEU A . n A 1 187 PRO 187 239 239 PRO PRO A . n A 1 188 VAL 188 240 240 VAL VAL A . n A 1 189 ARG 189 241 241 ARG ARG A . n A 1 190 LYS 190 242 242 LYS LYS A . n A 1 191 LYS 191 243 243 LYS LYS A . n A 1 192 VAL 192 244 244 VAL VAL A . n A 1 193 LEU 193 245 245 LEU LEU A . n A 1 194 ALA 194 246 246 ALA ALA A . n A 1 195 PRO 195 247 247 PRO PRO A . n A 1 196 ARG 196 248 248 ARG ARG A . n A 1 197 VAL 197 249 249 VAL VAL A . n A 1 198 ASN 198 250 250 ASN ASN A . n A 1 199 LEU 199 251 251 LEU LEU A . n A 1 200 THR 200 252 252 THR THR A . n A 1 201 PHE 201 253 253 PHE PHE A . n A 1 202 ARG 202 254 254 ARG ARG A . n A 1 203 LYS 203 255 255 LYS LYS A . n A 1 204 ILE 204 256 256 ILE ILE A . n A 1 205 LEU 205 257 257 LEU LEU A . n A 1 206 LEU 206 258 258 LEU LEU A . n A 1 207 THR 207 259 ? ? ? A . n A 1 208 LYS 208 260 ? ? ? A . n A 1 209 LYS 209 261 ? ? ? A . n B 2 1 DC 1 258 258 DC CD B . n B 2 2 DT 2 259 259 DT TD B . n B 2 3 DG 3 260 260 DG GD B . n B 2 4 DT 4 261 261 DT TD B . n B 2 5 DC 5 262 262 DC CD B . n B 2 6 DA 6 263 263 DA AD B . n B 2 7 DT 7 264 264 DT TD B . n B 2 8 DC 8 265 265 DC CD B . n B 2 9 DA 9 266 266 DA AD B . n B 2 10 DC 10 267 267 DC CD B . n B 2 11 DT 11 268 268 DT TD B . n B 2 12 DG 12 269 269 DG GD B . n B 2 13 DC 13 270 270 DC CD B . n B 2 14 DG 14 271 271 DG GD B . n C 3 1 DT 1 272 272 DT TD C . n C 3 2 DC 2 273 273 DC CD C . n C 3 3 DG 3 274 274 DG GD C . n C 3 4 DC 4 275 275 DC CD C . n C 3 5 DA 5 276 276 DA AD C . n C 3 6 DG 6 277 277 DG GD C . n C 3 7 DT 7 278 278 DT TD C . n C 3 8 DG 8 279 279 DG GD C . n C 3 9 DA 9 280 280 DA AD C . n C 3 10 DT 10 281 281 DT TD C . n C 3 11 DG 11 282 282 DG GD C . n C 3 12 DA 12 283 283 DA AD C . n C 3 13 DC 13 284 284 DC CD C . n C 3 14 DA 14 285 285 DA AD C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL 1 1 1 GOL GOL A . E 5 XL3 1 1 1 XL3 XL3 B . F 6 HOH 1 2 2 HOH HOH A . F 6 HOH 2 3 3 HOH HOH A . F 6 HOH 3 4 4 HOH HOH A . F 6 HOH 4 5 5 HOH HOH A . F 6 HOH 5 6 6 HOH HOH A . F 6 HOH 6 7 7 HOH HOH A . F 6 HOH 7 8 8 HOH HOH A . F 6 HOH 8 9 9 HOH HOH A . F 6 HOH 9 11 11 HOH HOH A . F 6 HOH 10 12 12 HOH HOH A . F 6 HOH 11 13 13 HOH HOH A . F 6 HOH 12 14 14 HOH HOH A . F 6 HOH 13 15 15 HOH HOH A . F 6 HOH 14 16 16 HOH HOH A . F 6 HOH 15 17 17 HOH HOH A . F 6 HOH 16 18 18 HOH HOH A . F 6 HOH 17 20 20 HOH HOH A . F 6 HOH 18 21 21 HOH HOH A . F 6 HOH 19 23 23 HOH HOH A . F 6 HOH 20 24 24 HOH HOH A . F 6 HOH 21 25 25 HOH HOH A . F 6 HOH 22 26 26 HOH HOH A . F 6 HOH 23 27 27 HOH HOH A . F 6 HOH 24 28 28 HOH HOH A . F 6 HOH 25 29 29 HOH HOH A . F 6 HOH 26 30 30 HOH HOH A . F 6 HOH 27 31 31 HOH HOH A . F 6 HOH 28 32 32 HOH HOH A . F 6 HOH 29 33 33 HOH HOH A . F 6 HOH 30 34 34 HOH HOH A . F 6 HOH 31 35 35 HOH HOH A . F 6 HOH 32 38 38 HOH HOH A . F 6 HOH 33 39 39 HOH HOH A . F 6 HOH 34 40 40 HOH HOH A . F 6 HOH 35 41 41 HOH HOH A . F 6 HOH 36 42 42 HOH HOH A . F 6 HOH 37 43 43 HOH HOH A . F 6 HOH 38 45 45 HOH HOH A . F 6 HOH 39 46 46 HOH HOH A . F 6 HOH 40 47 47 HOH HOH A . F 6 HOH 41 48 48 HOH HOH A . F 6 HOH 42 50 50 HOH HOH A . F 6 HOH 43 52 52 HOH HOH A . F 6 HOH 44 262 262 HOH HOH A . F 6 HOH 45 263 263 HOH HOH A . F 6 HOH 46 264 264 HOH HOH A . F 6 HOH 47 265 265 HOH HOH A . F 6 HOH 48 266 266 HOH HOH A . F 6 HOH 49 267 267 HOH HOH A . F 6 HOH 50 268 268 HOH HOH A . F 6 HOH 51 269 269 HOH HOH A . F 6 HOH 52 270 270 HOH HOH A . F 6 HOH 53 271 271 HOH HOH A . F 6 HOH 54 272 272 HOH HOH A . F 6 HOH 55 273 273 HOH HOH A . F 6 HOH 56 274 274 HOH HOH A . F 6 HOH 57 275 275 HOH HOH A . F 6 HOH 58 276 276 HOH HOH A . F 6 HOH 59 277 277 HOH HOH A . F 6 HOH 60 278 278 HOH HOH A . F 6 HOH 61 279 279 HOH HOH A . F 6 HOH 62 280 280 HOH HOH A . F 6 HOH 63 281 1 HOH HOH A . F 6 HOH 64 282 53 HOH HOH A . F 6 HOH 65 283 283 HOH HOH A . F 6 HOH 66 284 55 HOH HOH A . F 6 HOH 67 285 285 HOH HOH A . F 6 HOH 68 286 286 HOH HOH A . F 6 HOH 69 287 287 HOH HOH A . F 6 HOH 70 288 288 HOH HOH A . F 6 HOH 71 289 289 HOH HOH A . F 6 HOH 72 290 290 HOH HOH A . F 6 HOH 73 291 291 HOH HOH A . F 6 HOH 74 292 292 HOH HOH A . F 6 HOH 75 293 56 HOH HOH A . F 6 HOH 76 294 57 HOH HOH A . F 6 HOH 77 295 59 HOH HOH A . F 6 HOH 78 296 60 HOH HOH A . F 6 HOH 79 297 61 HOH HOH A . F 6 HOH 80 298 298 HOH HOH A . F 6 HOH 81 299 299 HOH HOH A . F 6 HOH 82 300 62 HOH HOH A . F 6 HOH 83 301 301 HOH HOH A . F 6 HOH 84 302 302 HOH HOH A . F 6 HOH 85 303 63 HOH HOH A . F 6 HOH 86 304 64 HOH HOH A . F 6 HOH 87 305 65 HOH HOH A . F 6 HOH 88 306 68 HOH HOH A . F 6 HOH 89 307 69 HOH HOH A . F 6 HOH 90 308 71 HOH HOH A . F 6 HOH 91 309 72 HOH HOH A . F 6 HOH 92 310 73 HOH HOH A . F 6 HOH 93 311 74 HOH HOH A . F 6 HOH 94 312 75 HOH HOH A . F 6 HOH 95 313 77 HOH HOH A . F 6 HOH 96 314 78 HOH HOH A . F 6 HOH 97 315 82 HOH HOH A . F 6 HOH 98 316 83 HOH HOH A . F 6 HOH 99 317 85 HOH HOH A . F 6 HOH 100 318 87 HOH HOH A . F 6 HOH 101 319 88 HOH HOH A . F 6 HOH 102 320 89 HOH HOH A . F 6 HOH 103 321 90 HOH HOH A . F 6 HOH 104 322 91 HOH HOH A . F 6 HOH 105 323 93 HOH HOH A . F 6 HOH 106 324 95 HOH HOH A . F 6 HOH 107 325 96 HOH HOH A . F 6 HOH 108 326 97 HOH HOH A . F 6 HOH 109 327 98 HOH HOH A . F 6 HOH 110 328 99 HOH HOH A . F 6 HOH 111 329 100 HOH HOH A . F 6 HOH 112 330 102 HOH HOH A . F 6 HOH 113 331 104 HOH HOH A . F 6 HOH 114 332 105 HOH HOH A . F 6 HOH 115 333 106 HOH HOH A . F 6 HOH 116 334 107 HOH HOH A . F 6 HOH 117 335 108 HOH HOH A . F 6 HOH 118 336 109 HOH HOH A . F 6 HOH 119 337 111 HOH HOH A . F 6 HOH 120 338 116 HOH HOH A . F 6 HOH 121 339 117 HOH HOH A . F 6 HOH 122 340 119 HOH HOH A . F 6 HOH 123 341 121 HOH HOH A . F 6 HOH 124 342 123 HOH HOH A . F 6 HOH 125 343 125 HOH HOH A . F 6 HOH 126 344 127 HOH HOH A . F 6 HOH 127 345 128 HOH HOH A . F 6 HOH 128 346 129 HOH HOH A . F 6 HOH 129 347 130 HOH HOH A . F 6 HOH 130 348 131 HOH HOH A . F 6 HOH 131 349 133 HOH HOH A . F 6 HOH 132 350 134 HOH HOH A . F 6 HOH 133 351 135 HOH HOH A . F 6 HOH 134 352 137 HOH HOH A . F 6 HOH 135 353 139 HOH HOH A . F 6 HOH 136 354 140 HOH HOH A . F 6 HOH 137 355 141 HOH HOH A . F 6 HOH 138 356 142 HOH HOH A . F 6 HOH 139 357 144 HOH HOH A . F 6 HOH 140 358 145 HOH HOH A . F 6 HOH 141 359 146 HOH HOH A . F 6 HOH 142 360 147 HOH HOH A . F 6 HOH 143 361 148 HOH HOH A . F 6 HOH 144 362 149 HOH HOH A . F 6 HOH 145 363 150 HOH HOH A . F 6 HOH 146 364 151 HOH HOH A . F 6 HOH 147 365 153 HOH HOH A . F 6 HOH 148 366 154 HOH HOH A . F 6 HOH 149 367 155 HOH HOH A . F 6 HOH 150 368 156 HOH HOH A . F 6 HOH 151 369 157 HOH HOH A . F 6 HOH 152 370 160 HOH HOH A . F 6 HOH 153 371 161 HOH HOH A . F 6 HOH 154 372 162 HOH HOH A . F 6 HOH 155 373 163 HOH HOH A . F 6 HOH 156 374 164 HOH HOH A . F 6 HOH 157 375 165 HOH HOH A . F 6 HOH 158 376 167 HOH HOH A . F 6 HOH 159 377 168 HOH HOH A . F 6 HOH 160 378 169 HOH HOH A . F 6 HOH 161 379 170 HOH HOH A . F 6 HOH 162 380 171 HOH HOH A . F 6 HOH 163 381 172 HOH HOH A . F 6 HOH 164 382 174 HOH HOH A . F 6 HOH 165 383 175 HOH HOH A . F 6 HOH 166 384 177 HOH HOH A . F 6 HOH 167 385 178 HOH HOH A . F 6 HOH 168 386 179 HOH HOH A . F 6 HOH 169 387 180 HOH HOH A . F 6 HOH 170 388 181 HOH HOH A . F 6 HOH 171 389 183 HOH HOH A . F 6 HOH 172 390 185 HOH HOH A . F 6 HOH 173 391 186 HOH HOH A . F 6 HOH 174 392 187 HOH HOH A . F 6 HOH 175 393 189 HOH HOH A . F 6 HOH 176 394 192 HOH HOH A . F 6 HOH 177 395 193 HOH HOH A . F 6 HOH 178 396 194 HOH HOH A . F 6 HOH 179 397 195 HOH HOH A . F 6 HOH 180 398 196 HOH HOH A . F 6 HOH 181 399 197 HOH HOH A . F 6 HOH 182 400 198 HOH HOH A . F 6 HOH 183 401 199 HOH HOH A . F 6 HOH 184 402 200 HOH HOH A . F 6 HOH 185 403 201 HOH HOH A . F 6 HOH 186 404 202 HOH HOH A . F 6 HOH 187 405 204 HOH HOH A . F 6 HOH 188 406 205 HOH HOH A . F 6 HOH 189 407 206 HOH HOH A . F 6 HOH 190 408 207 HOH HOH A . F 6 HOH 191 409 208 HOH HOH A . F 6 HOH 192 410 209 HOH HOH A . F 6 HOH 193 411 210 HOH HOH A . F 6 HOH 194 412 212 HOH HOH A . F 6 HOH 195 413 213 HOH HOH A . F 6 HOH 196 414 214 HOH HOH A . F 6 HOH 197 415 215 HOH HOH A . F 6 HOH 198 416 216 HOH HOH A . F 6 HOH 199 417 218 HOH HOH A . F 6 HOH 200 418 219 HOH HOH A . F 6 HOH 201 419 220 HOH HOH A . F 6 HOH 202 420 221 HOH HOH A . F 6 HOH 203 421 222 HOH HOH A . F 6 HOH 204 422 223 HOH HOH A . F 6 HOH 205 423 224 HOH HOH A . F 6 HOH 206 424 225 HOH HOH A . F 6 HOH 207 425 226 HOH HOH A . F 6 HOH 208 426 228 HOH HOH A . F 6 HOH 209 427 229 HOH HOH A . F 6 HOH 210 428 231 HOH HOH A . F 6 HOH 211 429 234 HOH HOH A . F 6 HOH 212 430 240 HOH HOH A . F 6 HOH 213 431 241 HOH HOH A . F 6 HOH 214 432 242 HOH HOH A . F 6 HOH 215 434 245 HOH HOH A . F 6 HOH 216 435 248 HOH HOH A . F 6 HOH 217 436 249 HOH HOH A . F 6 HOH 218 437 250 HOH HOH A . F 6 HOH 219 438 251 HOH HOH A . F 6 HOH 220 439 252 HOH HOH A . F 6 HOH 221 440 253 HOH HOH A . F 6 HOH 222 441 254 HOH HOH A . F 6 HOH 223 442 255 HOH HOH A . F 6 HOH 224 443 256 HOH HOH A . F 6 HOH 225 444 257 HOH HOH A . F 6 HOH 226 445 258 HOH HOH A . F 6 HOH 227 446 259 HOH HOH A . F 6 HOH 228 447 261 HOH HOH A . F 6 HOH 229 448 1 HOH HOH A . F 6 HOH 230 449 4 HOH HOH A . F 6 HOH 231 450 5 HOH HOH A . F 6 HOH 232 451 6 HOH HOH A . F 6 HOH 233 452 7 HOH HOH A . G 6 HOH 1 2 2 HOH HOH B . G 6 HOH 2 10 10 HOH HOH B . G 6 HOH 3 44 44 HOH HOH B . G 6 HOH 4 49 49 HOH HOH B . G 6 HOH 5 51 51 HOH HOH B . G 6 HOH 6 54 54 HOH HOH B . G 6 HOH 7 66 66 HOH HOH B . G 6 HOH 8 67 67 HOH HOH B . G 6 HOH 9 70 70 HOH HOH B . G 6 HOH 10 76 76 HOH HOH B . G 6 HOH 11 81 81 HOH HOH B . G 6 HOH 12 112 112 HOH HOH B . G 6 HOH 13 118 118 HOH HOH B . G 6 HOH 14 126 126 HOH HOH B . G 6 HOH 15 152 152 HOH HOH B . G 6 HOH 16 158 158 HOH HOH B . G 6 HOH 17 159 159 HOH HOH B . G 6 HOH 18 166 166 HOH HOH B . G 6 HOH 19 173 173 HOH HOH B . G 6 HOH 20 176 176 HOH HOH B . G 6 HOH 21 190 190 HOH HOH B . G 6 HOH 22 191 191 HOH HOH B . G 6 HOH 23 203 203 HOH HOH B . G 6 HOH 24 227 227 HOH HOH B . G 6 HOH 25 232 232 HOH HOH B . G 6 HOH 26 235 235 HOH HOH B . G 6 HOH 27 236 236 HOH HOH B . G 6 HOH 28 281 281 HOH HOH B . G 6 HOH 29 282 282 HOH HOH B . G 6 HOH 30 284 284 HOH HOH B . G 6 HOH 31 293 293 HOH HOH B . G 6 HOH 32 294 294 HOH HOH B . G 6 HOH 33 300 300 HOH HOH B . H 6 HOH 1 1 1 HOH HOH C . H 6 HOH 2 2 2 HOH HOH C . H 6 HOH 3 3 3 HOH HOH C . H 6 HOH 4 19 19 HOH HOH C . H 6 HOH 5 22 22 HOH HOH C . H 6 HOH 6 36 36 HOH HOH C . H 6 HOH 7 37 37 HOH HOH C . H 6 HOH 8 58 58 HOH HOH C . H 6 HOH 9 79 79 HOH HOH C . H 6 HOH 10 84 84 HOH HOH C . H 6 HOH 11 86 86 HOH HOH C . H 6 HOH 12 92 92 HOH HOH C . H 6 HOH 13 94 94 HOH HOH C . H 6 HOH 14 101 101 HOH HOH C . H 6 HOH 15 110 110 HOH HOH C . H 6 HOH 16 113 113 HOH HOH C . H 6 HOH 17 114 114 HOH HOH C . H 6 HOH 18 115 115 HOH HOH C . H 6 HOH 19 120 120 HOH HOH C . H 6 HOH 20 122 122 HOH HOH C . H 6 HOH 21 124 124 HOH HOH C . H 6 HOH 22 132 132 HOH HOH C . H 6 HOH 23 136 136 HOH HOH C . H 6 HOH 24 138 138 HOH HOH C . H 6 HOH 25 143 143 HOH HOH C . H 6 HOH 26 182 182 HOH HOH C . H 6 HOH 27 184 184 HOH HOH C . H 6 HOH 28 188 188 HOH HOH C . H 6 HOH 29 211 211 HOH HOH C . H 6 HOH 30 217 217 HOH HOH C . H 6 HOH 31 237 237 HOH HOH C . H 6 HOH 32 238 238 HOH HOH C . H 6 HOH 33 239 239 HOH HOH C . H 6 HOH 34 243 243 HOH HOH C . H 6 HOH 35 246 246 HOH HOH C . H 6 HOH 36 247 247 HOH HOH C . H 6 HOH 37 260 260 HOH HOH C . H 6 HOH 38 295 295 HOH HOH C . H 6 HOH 39 296 296 HOH HOH C . H 6 HOH 40 297 297 HOH HOH C . H 6 HOH 41 303 303 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3600 ? 1 MORE -26 ? 1 'SSA (A^2)' 14000 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-06-06 2 'Structure model' 1 1 2013-07-03 3 'Structure model' 1 2 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ref_seq_dif 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_dist_value' 4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 6 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 11 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 12 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 13 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 16 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 17 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 18 3 'Structure model' '_struct_ref_seq_dif.details' 19 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 20 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 21 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -1.4363 17.7343 -16.6101 0.0618 0.0612 0.0470 0.0003 -0.0023 0.0012 0.0685 0.9240 0.7411 0.0406 -0.0133 -0.2022 -0.0273 -0.0127 -0.0119 0.0358 0.0244 -0.0222 -0.0548 0.0222 0.0029 'X-RAY DIFFRACTION' 2 ? refined -0.4589 -3.6236 -13.8687 0.0025 0.0875 0.1053 0.0161 0.0146 0.0269 1.4640 1.3691 0.7687 -0.0306 -0.1114 0.0110 -0.1412 -0.2421 -0.1444 -0.0672 0.0847 -0.0452 -0.0949 -0.0053 0.0565 'X-RAY DIFFRACTION' 3 ? refined -1.6708 -2.3252 -13.9157 -0.0039 0.0676 0.1199 0.0340 0.0033 0.0330 -0.0556 1.1557 1.8288 -0.1577 0.7329 -0.5779 -0.2288 -0.1044 -0.0461 0.1629 0.1973 -0.0146 0.2284 0.0564 0.0315 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 55 ? ? A 258 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 259 ? ? B 271 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 272 ? ? C 284 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASES phasing . ? 2 REFMAC refinement 5.5.0110 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DA 266 ? ? "C1'" B DA 266 ? ? N9 B DA 266 ? ? 110.82 108.30 2.52 0.30 N 2 1 "O4'" B DC 270 ? ? "C1'" B DC 270 ? ? N1 B DC 270 ? ? 110.40 108.30 2.10 0.30 N 3 1 "O4'" C DG 274 ? ? "C1'" C DG 274 ? ? N9 C DG 274 ? ? 112.86 108.30 4.56 0.30 N 4 1 "O4'" C DA 276 ? ? "C1'" C DA 276 ? ? N9 C DA 276 ? ? 103.19 108.00 -4.81 0.70 N 5 1 "O4'" C DT 278 ? ? "C4'" C DT 278 ? ? "C3'" C DT 278 ? ? 101.34 104.50 -3.16 0.40 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 110 ? ? 173.77 156.29 2 1 SER A 125 ? ? 57.19 70.31 3 1 ARG A 176 ? ? -119.70 51.20 4 1 ARG A 210 ? ? -113.22 58.30 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ARG _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 176 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ASP _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 177 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 149.68 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 53 ? A GLY 1 2 1 Y 1 A SER 54 ? A SER 2 3 1 Y 1 A THR 259 ? A THR 207 4 1 Y 1 A LYS 260 ? A LYS 208 5 1 Y 1 A LYS 261 ? A LYS 209 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 GOL C1 C N N 280 GOL O1 O N N 281 GOL C2 C N N 282 GOL O2 O N N 283 GOL C3 C N N 284 GOL O3 O N N 285 GOL H11 H N N 286 GOL H12 H N N 287 GOL HO1 H N N 288 GOL H2 H N N 289 GOL HO2 H N N 290 GOL H31 H N N 291 GOL H32 H N N 292 GOL HO3 H N N 293 HIS N N N N 294 HIS CA C N S 295 HIS C C N N 296 HIS O O N N 297 HIS CB C N N 298 HIS CG C Y N 299 HIS ND1 N Y N 300 HIS CD2 C Y N 301 HIS CE1 C Y N 302 HIS NE2 N Y N 303 HIS OXT O N N 304 HIS H H N N 305 HIS H2 H N N 306 HIS HA H N N 307 HIS HB2 H N N 308 HIS HB3 H N N 309 HIS HD1 H N N 310 HIS HD2 H N N 311 HIS HE1 H N N 312 HIS HE2 H N N 313 HIS HXT H N N 314 HOH O O N N 315 HOH H1 H N N 316 HOH H2 H N N 317 ILE N N N N 318 ILE CA C N S 319 ILE C C N N 320 ILE O O N N 321 ILE CB C N S 322 ILE CG1 C N N 323 ILE CG2 C N N 324 ILE CD1 C N N 325 ILE OXT O N N 326 ILE H H N N 327 ILE H2 H N N 328 ILE HA H N N 329 ILE HB H N N 330 ILE HG12 H N N 331 ILE HG13 H N N 332 ILE HG21 H N N 333 ILE HG22 H N N 334 ILE HG23 H N N 335 ILE HD11 H N N 336 ILE HD12 H N N 337 ILE HD13 H N N 338 ILE HXT H N N 339 LEU N N N N 340 LEU CA C N S 341 LEU C C N N 342 LEU O O N N 343 LEU CB C N N 344 LEU CG C N N 345 LEU CD1 C N N 346 LEU CD2 C N N 347 LEU OXT O N N 348 LEU H H N N 349 LEU H2 H N N 350 LEU HA H N N 351 LEU HB2 H N N 352 LEU HB3 H N N 353 LEU HG H N N 354 LEU HD11 H N N 355 LEU HD12 H N N 356 LEU HD13 H N N 357 LEU HD21 H N N 358 LEU HD22 H N N 359 LEU HD23 H N N 360 LEU HXT H N N 361 LYS N N N N 362 LYS CA C N S 363 LYS C C N N 364 LYS O O N N 365 LYS CB C N N 366 LYS CG C N N 367 LYS CD C N N 368 LYS CE C N N 369 LYS NZ N N N 370 LYS OXT O N N 371 LYS H H N N 372 LYS H2 H N N 373 LYS HA H N N 374 LYS HB2 H N N 375 LYS HB3 H N N 376 LYS HG2 H N N 377 LYS HG3 H N N 378 LYS HD2 H N N 379 LYS HD3 H N N 380 LYS HE2 H N N 381 LYS HE3 H N N 382 LYS HZ1 H N N 383 LYS HZ2 H N N 384 LYS HZ3 H N N 385 LYS HXT H N N 386 MET N N N N 387 MET CA C N S 388 MET C C N N 389 MET O O N N 390 MET CB C N N 391 MET CG C N N 392 MET SD S N N 393 MET CE C N N 394 MET OXT O N N 395 MET H H N N 396 MET H2 H N N 397 MET HA H N N 398 MET HB2 H N N 399 MET HB3 H N N 400 MET HG2 H N N 401 MET HG3 H N N 402 MET HE1 H N N 403 MET HE2 H N N 404 MET HE3 H N N 405 MET HXT H N N 406 PHE N N N N 407 PHE CA C N S 408 PHE C C N N 409 PHE O O N N 410 PHE CB C N N 411 PHE CG C Y N 412 PHE CD1 C Y N 413 PHE CD2 C Y N 414 PHE CE1 C Y N 415 PHE CE2 C Y N 416 PHE CZ C Y N 417 PHE OXT O N N 418 PHE H H N N 419 PHE H2 H N N 420 PHE HA H N N 421 PHE HB2 H N N 422 PHE HB3 H N N 423 PHE HD1 H N N 424 PHE HD2 H N N 425 PHE HE1 H N N 426 PHE HE2 H N N 427 PHE HZ H N N 428 PHE HXT H N N 429 PRO N N N N 430 PRO CA C N S 431 PRO C C N N 432 PRO O O N N 433 PRO CB C N N 434 PRO CG C N N 435 PRO CD C N N 436 PRO OXT O N N 437 PRO H H N N 438 PRO HA H N N 439 PRO HB2 H N N 440 PRO HB3 H N N 441 PRO HG2 H N N 442 PRO HG3 H N N 443 PRO HD2 H N N 444 PRO HD3 H N N 445 PRO HXT H N N 446 SER N N N N 447 SER CA C N S 448 SER C C N N 449 SER O O N N 450 SER CB C N N 451 SER OG O N N 452 SER OXT O N N 453 SER H H N N 454 SER H2 H N N 455 SER HA H N N 456 SER HB2 H N N 457 SER HB3 H N N 458 SER HG H N N 459 SER HXT H N N 460 THR N N N N 461 THR CA C N S 462 THR C C N N 463 THR O O N N 464 THR CB C N R 465 THR OG1 O N N 466 THR CG2 C N N 467 THR OXT O N N 468 THR H H N N 469 THR H2 H N N 470 THR HA H N N 471 THR HB H N N 472 THR HG1 H N N 473 THR HG21 H N N 474 THR HG22 H N N 475 THR HG23 H N N 476 THR HXT H N N 477 TRP N N N N 478 TRP CA C N S 479 TRP C C N N 480 TRP O O N N 481 TRP CB C N N 482 TRP CG C Y N 483 TRP CD1 C Y N 484 TRP CD2 C Y N 485 TRP NE1 N Y N 486 TRP CE2 C Y N 487 TRP CE3 C Y N 488 TRP CZ2 C Y N 489 TRP CZ3 C Y N 490 TRP CH2 C Y N 491 TRP OXT O N N 492 TRP H H N N 493 TRP H2 H N N 494 TRP HA H N N 495 TRP HB2 H N N 496 TRP HB3 H N N 497 TRP HD1 H N N 498 TRP HE1 H N N 499 TRP HE3 H N N 500 TRP HZ2 H N N 501 TRP HZ3 H N N 502 TRP HH2 H N N 503 TRP HXT H N N 504 TYR N N N N 505 TYR CA C N S 506 TYR C C N N 507 TYR O O N N 508 TYR CB C N N 509 TYR CG C Y N 510 TYR CD1 C Y N 511 TYR CD2 C Y N 512 TYR CE1 C Y N 513 TYR CE2 C Y N 514 TYR CZ C Y N 515 TYR OH O N N 516 TYR OXT O N N 517 TYR H H N N 518 TYR H2 H N N 519 TYR HA H N N 520 TYR HB2 H N N 521 TYR HB3 H N N 522 TYR HD1 H N N 523 TYR HD2 H N N 524 TYR HE1 H N N 525 TYR HE2 H N N 526 TYR HH H N N 527 TYR HXT H N N 528 VAL N N N N 529 VAL CA C N S 530 VAL C C N N 531 VAL O O N N 532 VAL CB C N N 533 VAL CG1 C N N 534 VAL CG2 C N N 535 VAL OXT O N N 536 VAL H H N N 537 VAL H2 H N N 538 VAL HA H N N 539 VAL HB H N N 540 VAL HG11 H N N 541 VAL HG12 H N N 542 VAL HG13 H N N 543 VAL HG21 H N N 544 VAL HG22 H N N 545 VAL HG23 H N N 546 VAL HXT H N N 547 XL3 CA C N N 548 XL3 CB C N N 549 XL3 CC C N N 550 XL3 SG S N N 551 XL3 HA H N N 552 XL3 HAA H N N 553 XL3 HAB H N N 554 XL3 HB H N N 555 XL3 HBA H N N 556 XL3 HC H N N 557 XL3 HCA H N N 558 XL3 HSG H N N 559 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 GOL C1 O1 sing N N 278 GOL C1 C2 sing N N 279 GOL C1 H11 sing N N 280 GOL C1 H12 sing N N 281 GOL O1 HO1 sing N N 282 GOL C2 O2 sing N N 283 GOL C2 C3 sing N N 284 GOL C2 H2 sing N N 285 GOL O2 HO2 sing N N 286 GOL C3 O3 sing N N 287 GOL C3 H31 sing N N 288 GOL C3 H32 sing N N 289 GOL O3 HO3 sing N N 290 HIS N CA sing N N 291 HIS N H sing N N 292 HIS N H2 sing N N 293 HIS CA C sing N N 294 HIS CA CB sing N N 295 HIS CA HA sing N N 296 HIS C O doub N N 297 HIS C OXT sing N N 298 HIS CB CG sing N N 299 HIS CB HB2 sing N N 300 HIS CB HB3 sing N N 301 HIS CG ND1 sing Y N 302 HIS CG CD2 doub Y N 303 HIS ND1 CE1 doub Y N 304 HIS ND1 HD1 sing N N 305 HIS CD2 NE2 sing Y N 306 HIS CD2 HD2 sing N N 307 HIS CE1 NE2 sing Y N 308 HIS CE1 HE1 sing N N 309 HIS NE2 HE2 sing N N 310 HIS OXT HXT sing N N 311 HOH O H1 sing N N 312 HOH O H2 sing N N 313 ILE N CA sing N N 314 ILE N H sing N N 315 ILE N H2 sing N N 316 ILE CA C sing N N 317 ILE CA CB sing N N 318 ILE CA HA sing N N 319 ILE C O doub N N 320 ILE C OXT sing N N 321 ILE CB CG1 sing N N 322 ILE CB CG2 sing N N 323 ILE CB HB sing N N 324 ILE CG1 CD1 sing N N 325 ILE CG1 HG12 sing N N 326 ILE CG1 HG13 sing N N 327 ILE CG2 HG21 sing N N 328 ILE CG2 HG22 sing N N 329 ILE CG2 HG23 sing N N 330 ILE CD1 HD11 sing N N 331 ILE CD1 HD12 sing N N 332 ILE CD1 HD13 sing N N 333 ILE OXT HXT sing N N 334 LEU N CA sing N N 335 LEU N H sing N N 336 LEU N H2 sing N N 337 LEU CA C sing N N 338 LEU CA CB sing N N 339 LEU CA HA sing N N 340 LEU C O doub N N 341 LEU C OXT sing N N 342 LEU CB CG sing N N 343 LEU CB HB2 sing N N 344 LEU CB HB3 sing N N 345 LEU CG CD1 sing N N 346 LEU CG CD2 sing N N 347 LEU CG HG sing N N 348 LEU CD1 HD11 sing N N 349 LEU CD1 HD12 sing N N 350 LEU CD1 HD13 sing N N 351 LEU CD2 HD21 sing N N 352 LEU CD2 HD22 sing N N 353 LEU CD2 HD23 sing N N 354 LEU OXT HXT sing N N 355 LYS N CA sing N N 356 LYS N H sing N N 357 LYS N H2 sing N N 358 LYS CA C sing N N 359 LYS CA CB sing N N 360 LYS CA HA sing N N 361 LYS C O doub N N 362 LYS C OXT sing N N 363 LYS CB CG sing N N 364 LYS CB HB2 sing N N 365 LYS CB HB3 sing N N 366 LYS CG CD sing N N 367 LYS CG HG2 sing N N 368 LYS CG HG3 sing N N 369 LYS CD CE sing N N 370 LYS CD HD2 sing N N 371 LYS CD HD3 sing N N 372 LYS CE NZ sing N N 373 LYS CE HE2 sing N N 374 LYS CE HE3 sing N N 375 LYS NZ HZ1 sing N N 376 LYS NZ HZ2 sing N N 377 LYS NZ HZ3 sing N N 378 LYS OXT HXT sing N N 379 MET N CA sing N N 380 MET N H sing N N 381 MET N H2 sing N N 382 MET CA C sing N N 383 MET CA CB sing N N 384 MET CA HA sing N N 385 MET C O doub N N 386 MET C OXT sing N N 387 MET CB CG sing N N 388 MET CB HB2 sing N N 389 MET CB HB3 sing N N 390 MET CG SD sing N N 391 MET CG HG2 sing N N 392 MET CG HG3 sing N N 393 MET SD CE sing N N 394 MET CE HE1 sing N N 395 MET CE HE2 sing N N 396 MET CE HE3 sing N N 397 MET OXT HXT sing N N 398 PHE N CA sing N N 399 PHE N H sing N N 400 PHE N H2 sing N N 401 PHE CA C sing N N 402 PHE CA CB sing N N 403 PHE CA HA sing N N 404 PHE C O doub N N 405 PHE C OXT sing N N 406 PHE CB CG sing N N 407 PHE CB HB2 sing N N 408 PHE CB HB3 sing N N 409 PHE CG CD1 doub Y N 410 PHE CG CD2 sing Y N 411 PHE CD1 CE1 sing Y N 412 PHE CD1 HD1 sing N N 413 PHE CD2 CE2 doub Y N 414 PHE CD2 HD2 sing N N 415 PHE CE1 CZ doub Y N 416 PHE CE1 HE1 sing N N 417 PHE CE2 CZ sing Y N 418 PHE CE2 HE2 sing N N 419 PHE CZ HZ sing N N 420 PHE OXT HXT sing N N 421 PRO N CA sing N N 422 PRO N CD sing N N 423 PRO N H sing N N 424 PRO CA C sing N N 425 PRO CA CB sing N N 426 PRO CA HA sing N N 427 PRO C O doub N N 428 PRO C OXT sing N N 429 PRO CB CG sing N N 430 PRO CB HB2 sing N N 431 PRO CB HB3 sing N N 432 PRO CG CD sing N N 433 PRO CG HG2 sing N N 434 PRO CG HG3 sing N N 435 PRO CD HD2 sing N N 436 PRO CD HD3 sing N N 437 PRO OXT HXT sing N N 438 SER N CA sing N N 439 SER N H sing N N 440 SER N H2 sing N N 441 SER CA C sing N N 442 SER CA CB sing N N 443 SER CA HA sing N N 444 SER C O doub N N 445 SER C OXT sing N N 446 SER CB OG sing N N 447 SER CB HB2 sing N N 448 SER CB HB3 sing N N 449 SER OG HG sing N N 450 SER OXT HXT sing N N 451 THR N CA sing N N 452 THR N H sing N N 453 THR N H2 sing N N 454 THR CA C sing N N 455 THR CA CB sing N N 456 THR CA HA sing N N 457 THR C O doub N N 458 THR C OXT sing N N 459 THR CB OG1 sing N N 460 THR CB CG2 sing N N 461 THR CB HB sing N N 462 THR OG1 HG1 sing N N 463 THR CG2 HG21 sing N N 464 THR CG2 HG22 sing N N 465 THR CG2 HG23 sing N N 466 THR OXT HXT sing N N 467 TRP N CA sing N N 468 TRP N H sing N N 469 TRP N H2 sing N N 470 TRP CA C sing N N 471 TRP CA CB sing N N 472 TRP CA HA sing N N 473 TRP C O doub N N 474 TRP C OXT sing N N 475 TRP CB CG sing N N 476 TRP CB HB2 sing N N 477 TRP CB HB3 sing N N 478 TRP CG CD1 doub Y N 479 TRP CG CD2 sing Y N 480 TRP CD1 NE1 sing Y N 481 TRP CD1 HD1 sing N N 482 TRP CD2 CE2 doub Y N 483 TRP CD2 CE3 sing Y N 484 TRP NE1 CE2 sing Y N 485 TRP NE1 HE1 sing N N 486 TRP CE2 CZ2 sing Y N 487 TRP CE3 CZ3 doub Y N 488 TRP CE3 HE3 sing N N 489 TRP CZ2 CH2 doub Y N 490 TRP CZ2 HZ2 sing N N 491 TRP CZ3 CH2 sing Y N 492 TRP CZ3 HZ3 sing N N 493 TRP CH2 HH2 sing N N 494 TRP OXT HXT sing N N 495 TYR N CA sing N N 496 TYR N H sing N N 497 TYR N H2 sing N N 498 TYR CA C sing N N 499 TYR CA CB sing N N 500 TYR CA HA sing N N 501 TYR C O doub N N 502 TYR C OXT sing N N 503 TYR CB CG sing N N 504 TYR CB HB2 sing N N 505 TYR CB HB3 sing N N 506 TYR CG CD1 doub Y N 507 TYR CG CD2 sing Y N 508 TYR CD1 CE1 sing Y N 509 TYR CD1 HD1 sing N N 510 TYR CD2 CE2 doub Y N 511 TYR CD2 HD2 sing N N 512 TYR CE1 CZ doub Y N 513 TYR CE1 HE1 sing N N 514 TYR CE2 CZ sing Y N 515 TYR CE2 HE2 sing N N 516 TYR CZ OH sing N N 517 TYR OH HH sing N N 518 TYR OXT HXT sing N N 519 VAL N CA sing N N 520 VAL N H sing N N 521 VAL N H2 sing N N 522 VAL CA C sing N N 523 VAL CA CB sing N N 524 VAL CA HA sing N N 525 VAL C O doub N N 526 VAL C OXT sing N N 527 VAL CB CG1 sing N N 528 VAL CB CG2 sing N N 529 VAL CB HB sing N N 530 VAL CG1 HG11 sing N N 531 VAL CG1 HG12 sing N N 532 VAL CG1 HG13 sing N N 533 VAL CG2 HG21 sing N N 534 VAL CG2 HG22 sing N N 535 VAL CG2 HG23 sing N N 536 VAL OXT HXT sing N N 537 XL3 CA CB sing N N 538 XL3 CA HA sing N N 539 XL3 CA HAA sing N N 540 XL3 CA HAB sing N N 541 XL3 CC CB sing N N 542 XL3 CB HB sing N N 543 XL3 CB HBA sing N N 544 XL3 SG CC sing N N 545 XL3 CC HC sing N N 546 XL3 CC HCA sing N N 547 XL3 SG HSG sing N N 548 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3RZG 'double helix' 3RZG 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DT 2 1_555 C DA 14 1_555 -0.187 -0.198 0.124 -7.991 -11.638 -0.418 1 B_DT259:DA285_C B 259 ? C 285 ? 20 1 1 B DG 3 1_555 C DC 13 1_555 -0.543 -0.147 0.033 1.316 -7.820 3.325 2 B_DG260:DC284_C B 260 ? C 284 ? 19 1 1 B DT 4 1_555 C DA 12 1_555 -0.040 -0.128 -0.029 4.105 -10.731 0.593 3 B_DT261:DA283_C B 261 ? C 283 ? 20 1 1 B DC 5 1_555 C DG 11 1_555 0.246 -0.235 0.011 0.632 -11.696 0.058 4 B_DC262:DG282_C B 262 ? C 282 ? 19 1 1 B DA 6 1_555 C DT 10 1_555 0.024 -0.086 0.146 2.712 -7.688 -0.352 5 B_DA263:DT281_C B 263 ? C 281 ? 20 1 1 B DT 7 1_555 C DA 9 1_555 0.014 -0.117 -0.034 10.787 -9.248 6.052 6 B_DT264:DA280_C B 264 ? C 280 ? 20 1 1 B DC 8 1_555 C DG 8 1_555 0.272 -0.124 -0.142 25.658 -18.329 -1.169 7 B_DC265:DG279_C B 265 ? C 279 ? 19 1 1 B DA 9 1_555 C DT 7 1_555 0.106 -0.137 -0.301 -14.738 8.895 2.006 8 B_DA266:DT278_C B 266 ? C 278 ? 20 1 1 B DC 10 1_555 C DG 6 1_555 0.236 -0.170 0.495 -7.501 -16.721 0.137 9 B_DC267:DG277_C B 267 ? C 277 ? 19 1 1 B DT 11 1_555 C DA 5 1_555 -0.066 -0.077 0.127 -2.847 -10.629 -1.061 10 B_DT268:DA276_C B 268 ? C 276 ? 20 1 1 B DG 12 1_555 C DC 4 1_555 -0.016 -0.113 0.208 -4.984 -15.046 -0.154 11 B_DG269:DC275_C B 269 ? C 275 ? 19 1 1 B DC 13 1_555 C DG 3 1_555 -0.095 -0.205 0.483 -17.769 -8.692 -2.214 12 B_DC270:DG274_C B 270 ? C 274 ? 19 1 1 B DG 14 1_555 C DC 2 1_555 -0.289 -0.221 -0.024 -5.428 -6.704 -2.368 13 B_DG271:DC273_C B 271 ? C 273 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DT 2 1_555 C DA 14 1_555 B DG 3 1_555 C DC 13 1_555 0.355 0.578 3.161 -2.440 10.364 32.314 -0.655 -0.995 3.158 18.021 4.242 33.979 1 BB_DT259DG260:DC284DA285_CC B 259 ? C 285 ? B 260 ? C 284 ? 1 B DG 3 1_555 C DC 13 1_555 B DT 4 1_555 C DA 12 1_555 -0.623 -0.241 3.182 -0.358 3.466 33.841 -0.948 1.009 3.148 5.934 0.613 34.014 2 BB_DG260DT261:DA283DC284_CC B 260 ? C 284 ? B 261 ? C 283 ? 1 B DT 4 1_555 C DA 12 1_555 B DC 5 1_555 C DG 11 1_555 0.513 -0.190 3.285 2.649 4.220 38.233 -0.813 -0.447 3.273 6.410 -4.023 38.544 3 BB_DT261DC262:DG282DA283_CC B 261 ? C 283 ? B 262 ? C 282 ? 1 B DC 5 1_555 C DG 11 1_555 B DA 6 1_555 C DT 10 1_555 0.132 0.373 3.243 1.199 7.237 34.979 -0.443 -0.041 3.256 11.879 -1.968 35.716 4 BB_DC262DA263:DT281DG282_CC B 262 ? C 282 ? B 263 ? C 281 ? 1 B DA 6 1_555 C DT 10 1_555 B DT 7 1_555 C DA 9 1_555 0.334 -0.612 3.084 0.768 3.232 28.009 -1.959 -0.517 3.004 6.648 -1.581 28.201 5 BB_DA263DT264:DA280DT281_CC B 263 ? C 281 ? B 264 ? C 280 ? 1 B DT 7 1_555 C DA 9 1_555 B DC 8 1_555 C DG 8 1_555 0.248 2.532 3.011 11.353 0.150 39.340 3.609 0.809 2.977 0.218 -16.452 40.884 6 BB_DT264DC265:DG279DA280_CC B 264 ? C 280 ? B 265 ? C 279 ? 1 B DC 8 1_555 C DG 8 1_555 B DA 9 1_555 C DT 7 1_555 -0.218 1.033 6.743 -14.933 36.752 17.419 -7.102 -3.160 3.722 62.283 25.307 43.185 7 BB_DC265DA266:DT278DG279_CC B 265 ? C 279 ? B 266 ? C 278 ? 1 B DA 9 1_555 C DT 7 1_555 B DC 10 1_555 C DG 6 1_555 -0.757 -0.135 3.329 -4.101 -12.822 34.505 1.587 0.618 3.241 -20.668 6.611 36.963 8 BB_DA266DC267:DG277DT278_CC B 266 ? C 278 ? B 267 ? C 277 ? 1 B DC 10 1_555 C DG 6 1_555 B DT 11 1_555 C DA 5 1_555 -0.460 -0.297 3.135 4.019 6.163 32.501 -1.486 1.433 2.954 10.839 -7.068 33.301 9 BB_DC267DT268:DA276DG277_CC B 267 ? C 277 ? B 268 ? C 276 ? 1 B DT 11 1_555 C DA 5 1_555 B DG 12 1_555 C DC 4 1_555 0.511 0.180 3.333 -0.212 7.014 35.160 -0.739 -0.862 3.304 11.470 0.346 35.831 10 BB_DT268DG269:DC275DA276_CC B 268 ? C 276 ? B 269 ? C 275 ? 1 B DG 12 1_555 C DC 4 1_555 B DC 13 1_555 C DG 3 1_555 0.957 -0.345 3.578 -0.080 -0.809 34.184 -0.447 -1.642 3.582 -1.376 0.136 34.194 11 BB_DG269DC270:DG274DC275_CC B 269 ? C 275 ? B 270 ? C 274 ? 1 B DC 13 1_555 C DG 3 1_555 B DG 14 1_555 C DC 2 1_555 -0.714 -0.167 3.035 2.571 7.550 30.512 -1.593 1.753 2.845 14.047 -4.782 31.514 12 BB_DC270DG271:DC273DG274_CC B 270 ? C 274 ? B 271 ? C 273 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 GLYCEROL GOL 5 propane-1-thiol XL3 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3BTX _pdbx_initial_refinement_model.details ? #