data_3RZK # _entry.id 3RZK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3RZK pdb_00003rzk 10.2210/pdb3rzk/pdb NDB NA1136 ? ? RCSB RCSB065572 ? ? WWPDB D_1000065572 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3RZG . unspecified PDB 3RZH . unspecified PDB 3RZJ . unspecified PDB 3RZL . unspecified PDB 3RZM . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3RZK _pdbx_database_status.recvd_initial_deposition_date 2011-05-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yi, C.' 1 'Chen, B.' 2 'Qi, B.' 3 'Zhang, W.' 4 'Jia, G.' 5 'Zhang, L.' 6 'Li, C.' 7 'Dinner, A.' 8 'Yang, C.' 9 'He, C.' 10 # _citation.id primary _citation.title 'Duplex interrogation by a direct DNA repair protein in search of base damage' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 19 _citation.page_first 671 _citation.page_last 676 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22659876 _citation.pdbx_database_id_DOI 10.1038/nsmb.2320 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yi, C.' 1 ? primary 'Chen, B.' 2 ? primary 'Qi, B.' 3 ? primary 'Zhang, W.' 4 ? primary 'Jia, G.' 5 ? primary 'Zhang, L.' 6 ? primary 'Li, C.J.' 7 ? primary 'Dinner, A.R.' 8 ? primary 'Yang, C.G.' 9 ? primary 'He, C.' 10 ? # _cell.entry_id 3RZK _cell.length_a 78.591 _cell.length_b 78.591 _cell.length_c 228.881 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3RZK _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2' 23778.156 1 1.14.11.- 'C67S, C165S, G169C, C192S' 'UNP RESIDUES 56-261' ? 2 polymer syn "5'-D(*CP*TP*GP*TP*CP*TP*(EDA)P*AP*CP*TP*GP*CP*G)-3'" 3966.593 1 ? ? ? ? 3 polymer syn "5'-D(*TP*CP*GP*CP*AP*GP*TP*TP*AP*GP*AP*CP*A)-3'" 3975.611 1 ? ? ? ? 4 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 5 non-polymer syn '2-OXOGLUTARIC ACID' 146.098 1 ? ? ? ? 6 non-polymer syn propane-1-thiol 76.161 1 ? ? ? ? 7 water nat water 18.015 12 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Alkylated DNA repair protein alkB homolog 2, Oxy DC1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSHSWRHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPK PWIPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSRGKSPSRRVA VVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLTKK ; ;GSHSWRHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPK PWIPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSRGKSPSRRVA VVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLTKK ; A ? 2 polydeoxyribonucleotide no yes '(DC)(DT)(DG)(DT)(DC)(DT)(EDA)(DA)(DC)(DT)(DG)(DC)(DG)' CTGTCTAACTGCG B ? 3 polydeoxyribonucleotide no no '(DT)(DC)(DG)(DC)(DA)(DG)(DT)(DT)(DA)(DG)(DA)(DC)(DA)' TCGCAGTTAGACA C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 SER n 1 5 TRP n 1 6 ARG n 1 7 HIS n 1 8 ILE n 1 9 ARG n 1 10 ALA n 1 11 GLU n 1 12 GLY n 1 13 LEU n 1 14 ASP n 1 15 SER n 1 16 SER n 1 17 TYR n 1 18 THR n 1 19 VAL n 1 20 LEU n 1 21 PHE n 1 22 GLY n 1 23 LYS n 1 24 ALA n 1 25 GLU n 1 26 ALA n 1 27 ASP n 1 28 GLU n 1 29 ILE n 1 30 PHE n 1 31 GLN n 1 32 GLU n 1 33 LEU n 1 34 GLU n 1 35 LYS n 1 36 GLU n 1 37 VAL n 1 38 GLU n 1 39 TYR n 1 40 PHE n 1 41 THR n 1 42 GLY n 1 43 ALA n 1 44 LEU n 1 45 ALA n 1 46 ARG n 1 47 VAL n 1 48 GLN n 1 49 VAL n 1 50 PHE n 1 51 GLY n 1 52 LYS n 1 53 TRP n 1 54 HIS n 1 55 SER n 1 56 VAL n 1 57 PRO n 1 58 ARG n 1 59 LYS n 1 60 GLN n 1 61 ALA n 1 62 THR n 1 63 TYR n 1 64 GLY n 1 65 ASP n 1 66 ALA n 1 67 GLY n 1 68 LEU n 1 69 THR n 1 70 TYR n 1 71 THR n 1 72 PHE n 1 73 SER n 1 74 GLY n 1 75 LEU n 1 76 THR n 1 77 LEU n 1 78 SER n 1 79 PRO n 1 80 LYS n 1 81 PRO n 1 82 TRP n 1 83 ILE n 1 84 PRO n 1 85 VAL n 1 86 LEU n 1 87 GLU n 1 88 ARG n 1 89 ILE n 1 90 ARG n 1 91 ASP n 1 92 HIS n 1 93 VAL n 1 94 SER n 1 95 GLY n 1 96 VAL n 1 97 THR n 1 98 GLY n 1 99 GLN n 1 100 THR n 1 101 PHE n 1 102 ASN n 1 103 PHE n 1 104 VAL n 1 105 LEU n 1 106 ILE n 1 107 ASN n 1 108 ARG n 1 109 TYR n 1 110 LYS n 1 111 ASP n 1 112 GLY n 1 113 SER n 1 114 ASP n 1 115 HIS n 1 116 ILE n 1 117 CYS n 1 118 GLU n 1 119 HIS n 1 120 ARG n 1 121 ASP n 1 122 ASP n 1 123 GLU n 1 124 ARG n 1 125 GLU n 1 126 LEU n 1 127 ALA n 1 128 PRO n 1 129 GLY n 1 130 SER n 1 131 PRO n 1 132 ILE n 1 133 ALA n 1 134 SER n 1 135 VAL n 1 136 SER n 1 137 PHE n 1 138 GLY n 1 139 ALA n 1 140 SER n 1 141 ARG n 1 142 ASP n 1 143 PHE n 1 144 VAL n 1 145 PHE n 1 146 ARG n 1 147 HIS n 1 148 LYS n 1 149 ASP n 1 150 SER n 1 151 ARG n 1 152 GLY n 1 153 LYS n 1 154 SER n 1 155 PRO n 1 156 SER n 1 157 ARG n 1 158 ARG n 1 159 VAL n 1 160 ALA n 1 161 VAL n 1 162 VAL n 1 163 ARG n 1 164 LEU n 1 165 PRO n 1 166 LEU n 1 167 ALA n 1 168 HIS n 1 169 GLY n 1 170 SER n 1 171 LEU n 1 172 LEU n 1 173 MET n 1 174 MET n 1 175 ASN n 1 176 HIS n 1 177 PRO n 1 178 THR n 1 179 ASN n 1 180 THR n 1 181 HIS n 1 182 TRP n 1 183 TYR n 1 184 HIS n 1 185 SER n 1 186 LEU n 1 187 PRO n 1 188 VAL n 1 189 ARG n 1 190 LYS n 1 191 LYS n 1 192 VAL n 1 193 LEU n 1 194 ALA n 1 195 PRO n 1 196 ARG n 1 197 VAL n 1 198 ASN n 1 199 LEU n 1 200 THR n 1 201 PHE n 1 202 ARG n 1 203 LYS n 1 204 ILE n 1 205 LEU n 1 206 LEU n 1 207 THR n 1 208 LYS n 1 209 LYS n 2 1 DC n 2 2 DT n 2 3 DG n 2 4 DT n 2 5 DC n 2 6 DT n 2 7 EDA n 2 8 DA n 2 9 DC n 2 10 DT n 2 11 DG n 2 12 DC n 2 13 DG n 3 1 DT n 3 2 DC n 3 3 DG n 3 4 DC n 3 5 DA n 3 6 DG n 3 7 DT n 3 8 DT n 3 9 DA n 3 10 DG n 3 11 DA n 3 12 DC n 3 13 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ALKBH2, ABH2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ALKB2_HUMAN Q6NS38 1 ;SWRHIRAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWI PVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDSRGKSPSRRVAVVR LPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLTKK ; 56 ? 2 PDB 3RZK 3RZK 2 ? ? ? 3 PDB 3RZK 3RZK 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3RZK A 4 ? 209 ? Q6NS38 56 ? 261 ? 56 261 2 2 3RZK B 1 ? 13 ? 3RZK 259 ? 271 ? 259 271 3 3 3RZK C 1 ? 13 ? 3RZK 272 ? 284 ? 272 284 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3RZK GLY A 1 ? UNP Q6NS38 ? ? 'expression tag' 53 1 1 3RZK SER A 2 ? UNP Q6NS38 ? ? 'expression tag' 54 2 1 3RZK HIS A 3 ? UNP Q6NS38 ? ? 'expression tag' 55 3 1 3RZK SER A 15 ? UNP Q6NS38 CYS 67 'engineered mutation' 67 4 1 3RZK SER A 113 ? UNP Q6NS38 CYS 165 'engineered mutation' 165 5 1 3RZK CYS A 117 ? UNP Q6NS38 GLY 169 'engineered mutation' 169 6 1 3RZK SER A 140 ? UNP Q6NS38 CYS 192 'engineered mutation' 192 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AKG non-polymer . '2-OXOGLUTARIC ACID' ? 'C5 H6 O5' 146.098 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 EDA 'DNA linking' n "3-[2-DEOXY-RIBOFURANOSYL]-3H-1,3,4,5A,8-PENTAAZA-AS-INDACENE-5'-MONOPHOSPHATE" ? 'C12 H14 N5 O6 P' 355.243 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 XL3 non-polymer . propane-1-thiol ? 'C3 H8 S' 76.161 # _exptl.entry_id 3RZK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.22 _exptl_crystal.density_percent_sol 61.76 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;8% PEG 8000, 0.1M sodium chloride, 0.05M magnesium chloride, 0.1M cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 200.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2010-06-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.entry_id 3RZK _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F 3.4 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.78 _reflns.number_obs 11348 _reflns.number_all 11360 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.78 _reflns_shell.d_res_low 2.88 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3RZK _refine.ls_number_reflns_obs 10604 _refine.ls_number_reflns_all 10679 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.4 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.78 _refine.ls_percent_reflns_obs 99.31 _refine.ls_R_factor_obs 0.22912 _refine.ls_R_factor_all 0.22912 _refine.ls_R_factor_R_work 0.22759 _refine.ls_R_factor_R_free 0.25940 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 534 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.931 _refine.correlation_coeff_Fo_to_Fc_free 0.920 _refine.B_iso_mean 60.296 _refine.aniso_B[1][1] -1.89 _refine.aniso_B[2][2] -1.89 _refine.aniso_B[3][3] 2.84 _refine.aniso_B[1][2] -0.95 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 3BTX _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.333 _refine.overall_SU_ML 0.270 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 29.151 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1626 _refine_hist.pdbx_number_atoms_nucleic_acid 527 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 12 _refine_hist.number_atoms_total 2180 _refine_hist.d_res_high 2.78 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.007 0.021 ? 2275 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.359 2.244 ? 3186 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.439 5.000 ? 199 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 30.185 21.500 ? 80 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 15.852 15.000 ? 276 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 11.110 15.000 ? 18 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.072 0.200 ? 344 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.003 0.021 ? 1562 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 0.524 1.500 ? 1003 ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it 0.966 2.000 ? 1620 ? 'X-RAY DIFFRACTION' r_scbond_it 0.870 3.000 ? 1272 ? 'X-RAY DIFFRACTION' r_scangle_it 1.533 4.500 ? 1566 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.780 _refine_ls_shell.d_res_low 2.851 _refine_ls_shell.number_reflns_R_work 748 _refine_ls_shell.R_factor_R_work 0.329 _refine_ls_shell.percent_reflns_obs 99.62 _refine_ls_shell.R_factor_R_free 0.458 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 38 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3RZK _struct.title 'Duplex Interrogation by a Direct DNA Repair Protein in the Search of Damage' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3RZK _struct_keywords.pdbx_keywords OXIDOREDUCTASE/DNA _struct_keywords.text 'PROTEIN-DNA COMPLEX, jelly-roll, demethylase, nucleus, OXIDOREDUCTASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 7 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 22 ? VAL A 37 ? GLY A 74 VAL A 89 1 ? 16 HELX_P HELX_P2 2 THR A 41 ? LEU A 44 ? THR A 93 LEU A 96 5 ? 4 HELX_P HELX_P3 3 ILE A 83 ? GLY A 98 ? ILE A 135 GLY A 150 1 ? 16 HELX_P HELX_P4 4 ASP A 149 ? ARG A 151 ? ASP A 201 ARG A 203 5 ? 3 HELX_P HELX_P5 5 PRO A 177 ? HIS A 181 ? PRO A 229 HIS A 233 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? F XL3 . CA ? ? ? 1_555 B DC 9 N4 ? ? B XL3 1 B DC 267 1_555 ? ? ? ? ? ? ? 1.471 ? ? covale2 covale both ? B DT 6 "O3'" ? ? ? 1_555 B EDA 7 P ? ? B DT 264 B EDA 265 1_555 ? ? ? ? ? ? ? 1.590 ? ? covale3 covale both ? B EDA 7 "O3'" ? ? ? 1_555 B DA 8 P ? ? B EDA 265 B DA 266 1_555 ? ? ? ? ? ? ? 1.589 ? ? metalc1 metalc ? ? D MN . MN ? ? ? 1_555 A HIS 119 NE2 ? ? A MN 1 A HIS 171 1_555 ? ? ? ? ? ? ? 2.131 ? ? metalc2 metalc ? ? D MN . MN ? ? ? 1_555 A ASP 121 OD1 ? ? A MN 1 A ASP 173 1_555 ? ? ? ? ? ? ? 2.126 ? ? metalc3 metalc ? ? D MN . MN ? ? ? 1_555 A HIS 184 NE2 ? ? A MN 1 A HIS 236 1_555 ? ? ? ? ? ? ? 2.380 ? ? metalc4 metalc ? ? D MN . MN ? ? ? 1_555 E AKG . O5 ? ? A MN 1 A AKG 262 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc5 metalc ? ? D MN . MN ? ? ? 1_555 E AKG . O2 ? ? A MN 1 A AKG 262 1_555 ? ? ? ? ? ? ? 2.196 ? ? hydrog1 hydrog ? ? B DT 2 N3 ? ? ? 1_555 C DA 13 N1 ? ? B DT 260 C DA 284 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DT 2 O4 ? ? ? 1_555 C DA 13 N6 ? ? B DT 260 C DA 284 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 12 N3 ? ? B DG 261 C DC 283 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 12 O2 ? ? B DG 261 C DC 283 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 12 N4 ? ? B DG 261 C DC 283 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 11 N1 ? ? B DT 262 C DA 282 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 11 N6 ? ? B DT 262 C DA 282 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 10 N1 ? ? B DC 263 C DG 281 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 10 O6 ? ? B DC 263 C DG 281 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 10 N2 ? ? B DC 263 C DG 281 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DT 6 N3 ? ? ? 1_555 C DT 8 O2 ? ? B DT 264 C DT 279 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog12 hydrog ? ? B DT 6 O4 ? ? ? 1_555 C DT 8 N3 ? ? B DT 264 C DT 279 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog13 hydrog ? ? B DA 8 N1 ? ? ? 1_555 C DT 7 N3 ? ? B DA 266 C DT 278 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C DT 7 O4 ? ? B DA 266 C DT 278 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 9 N3 ? ? ? 1_555 C DG 6 N1 ? ? B DC 267 C DG 277 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 9 N4 ? ? ? 1_555 C DG 6 O6 ? ? B DC 267 C DG 277 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DC 9 O2 ? ? ? 1_555 C DG 6 N2 ? ? B DC 267 C DG 277 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DT 10 N3 ? ? ? 1_555 C DA 5 N1 ? ? B DT 268 C DA 276 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DT 10 O4 ? ? ? 1_555 C DA 5 N6 ? ? B DT 268 C DA 276 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 4 N3 ? ? B DG 269 C DC 275 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 4 O2 ? ? B DG 269 C DC 275 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 4 N4 ? ? B DG 269 C DC 275 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DC 12 N3 ? ? ? 1_555 C DG 3 N1 ? ? B DC 270 C DG 274 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DC 12 N4 ? ? ? 1_555 C DG 3 O6 ? ? B DC 270 C DG 274 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DC 12 O2 ? ? ? 1_555 C DG 3 N2 ? ? B DC 270 C DG 274 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 13 N1 ? ? ? 1_555 C DC 2 N3 ? ? B DG 271 C DC 273 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 13 N2 ? ? ? 1_555 C DC 2 O2 ? ? B DG 271 C DC 273 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DG 13 O6 ? ? ? 1_555 C DC 2 N4 ? ? B DG 271 C DC 273 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id HIS _struct_mon_prot_cis.label_seq_id 176 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id HIS _struct_mon_prot_cis.auth_seq_id 228 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 177 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 229 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 9.83 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 2 ? C ? 2 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 6 ? ALA A 10 ? ARG A 58 ALA A 62 A 2 LEU A 13 ? VAL A 19 ? LEU A 65 VAL A 71 A 3 SER A 170 ? MET A 174 ? SER A 222 MET A 226 A 4 ILE A 132 ? GLY A 138 ? ILE A 184 GLY A 190 A 5 ARG A 196 ? ARG A 202 ? ARG A 248 ARG A 254 A 6 PHE A 103 ? TYR A 109 ? PHE A 155 TYR A 161 A 7 LYS A 59 ? GLY A 64 ? LYS A 111 GLY A 116 B 1 ARG A 46 ? VAL A 49 ? ARG A 98 VAL A 101 B 2 LYS A 52 ? SER A 55 ? LYS A 104 SER A 107 C 1 TYR A 70 ? PHE A 72 ? TYR A 122 PHE A 124 C 2 LEU A 75 ? LEU A 77 ? LEU A 127 LEU A 129 D 1 ILE A 116 ? HIS A 119 ? ILE A 168 HIS A 171 D 2 TRP A 182 ? LEU A 186 ? TRP A 234 LEU A 238 D 3 ARG A 141 ? HIS A 147 ? ARG A 193 HIS A 199 D 4 VAL A 162 ? LEU A 166 ? VAL A 214 LEU A 218 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 8 ? N ILE A 60 O SER A 15 ? O SER A 67 A 2 3 N THR A 18 ? N THR A 70 O LEU A 171 ? O LEU A 223 A 3 4 O LEU A 172 ? O LEU A 224 N SER A 134 ? N SER A 186 A 4 5 N ALA A 133 ? N ALA A 185 O PHE A 201 ? O PHE A 253 A 5 6 O ASN A 198 ? O ASN A 250 N ASN A 107 ? N ASN A 159 A 6 7 O ILE A 106 ? O ILE A 158 N ALA A 61 ? N ALA A 113 B 1 2 N VAL A 47 ? N VAL A 99 O HIS A 54 ? O HIS A 106 C 1 2 N TYR A 70 ? N TYR A 122 O LEU A 77 ? O LEU A 129 D 1 2 N HIS A 119 ? N HIS A 171 O HIS A 184 ? O HIS A 236 D 2 3 O TYR A 183 ? O TYR A 235 N ARG A 146 ? N ARG A 198 D 3 4 N PHE A 143 ? N PHE A 195 O LEU A 164 ? O LEU A 216 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MN 1 ? 4 'BINDING SITE FOR RESIDUE MN A 1' AC2 Software A AKG 262 ? 11 'BINDING SITE FOR RESIDUE AKG A 262' AC3 Software B XL3 1 ? 2 'BINDING SITE FOR RESIDUE XL3 B 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS A 119 ? HIS A 171 . ? 1_555 ? 2 AC1 4 ASP A 121 ? ASP A 173 . ? 1_555 ? 3 AC1 4 HIS A 184 ? HIS A 236 . ? 1_555 ? 4 AC1 4 AKG E . ? AKG A 262 . ? 1_555 ? 5 AC2 11 MN D . ? MN A 1 . ? 1_555 ? 6 AC2 11 ASN A 107 ? ASN A 159 . ? 1_555 ? 7 AC2 11 TYR A 109 ? TYR A 161 . ? 1_555 ? 8 AC2 11 HIS A 119 ? HIS A 171 . ? 1_555 ? 9 AC2 11 ASP A 121 ? ASP A 173 . ? 1_555 ? 10 AC2 11 HIS A 184 ? HIS A 236 . ? 1_555 ? 11 AC2 11 ARG A 196 ? ARG A 248 . ? 1_555 ? 12 AC2 11 ASN A 198 ? ASN A 250 . ? 1_555 ? 13 AC2 11 THR A 200 ? THR A 252 . ? 1_555 ? 14 AC2 11 ARG A 202 ? ARG A 254 . ? 1_555 ? 15 AC2 11 EDA B 7 ? EDA B 265 . ? 1_555 ? 16 AC3 2 CYS A 117 ? CYS A 169 . ? 1_555 ? 17 AC3 2 DC B 9 ? DC B 267 . ? 1_555 ? # _database_PDB_matrix.entry_id 3RZK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3RZK _atom_sites.fract_transf_matrix[1][1] 0.012724 _atom_sites.fract_transf_matrix[1][2] 0.007346 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014693 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004369 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 53 ? ? ? A . n A 1 2 SER 2 54 ? ? ? A . n A 1 3 HIS 3 55 55 HIS HIS A . n A 1 4 SER 4 56 56 SER SER A . n A 1 5 TRP 5 57 57 TRP TRP A . n A 1 6 ARG 6 58 58 ARG ARG A . n A 1 7 HIS 7 59 59 HIS HIS A . n A 1 8 ILE 8 60 60 ILE ILE A . n A 1 9 ARG 9 61 61 ARG ARG A . n A 1 10 ALA 10 62 62 ALA ALA A . n A 1 11 GLU 11 63 63 GLU GLU A . n A 1 12 GLY 12 64 64 GLY GLY A . n A 1 13 LEU 13 65 65 LEU LEU A . n A 1 14 ASP 14 66 66 ASP ASP A . n A 1 15 SER 15 67 67 SER SER A . n A 1 16 SER 16 68 68 SER SER A . n A 1 17 TYR 17 69 69 TYR TYR A . n A 1 18 THR 18 70 70 THR THR A . n A 1 19 VAL 19 71 71 VAL VAL A . n A 1 20 LEU 20 72 72 LEU LEU A . n A 1 21 PHE 21 73 73 PHE PHE A . n A 1 22 GLY 22 74 74 GLY GLY A . n A 1 23 LYS 23 75 75 LYS LYS A . n A 1 24 ALA 24 76 76 ALA ALA A . n A 1 25 GLU 25 77 77 GLU GLU A . n A 1 26 ALA 26 78 78 ALA ALA A . n A 1 27 ASP 27 79 79 ASP ASP A . n A 1 28 GLU 28 80 80 GLU GLU A . n A 1 29 ILE 29 81 81 ILE ILE A . n A 1 30 PHE 30 82 82 PHE PHE A . n A 1 31 GLN 31 83 83 GLN GLN A . n A 1 32 GLU 32 84 84 GLU GLU A . n A 1 33 LEU 33 85 85 LEU LEU A . n A 1 34 GLU 34 86 86 GLU GLU A . n A 1 35 LYS 35 87 87 LYS LYS A . n A 1 36 GLU 36 88 88 GLU GLU A . n A 1 37 VAL 37 89 89 VAL VAL A . n A 1 38 GLU 38 90 90 GLU GLU A . n A 1 39 TYR 39 91 91 TYR TYR A . n A 1 40 PHE 40 92 92 PHE PHE A . n A 1 41 THR 41 93 93 THR THR A . n A 1 42 GLY 42 94 94 GLY GLY A . n A 1 43 ALA 43 95 95 ALA ALA A . n A 1 44 LEU 44 96 96 LEU LEU A . n A 1 45 ALA 45 97 97 ALA ALA A . n A 1 46 ARG 46 98 98 ARG ARG A . n A 1 47 VAL 47 99 99 VAL VAL A . n A 1 48 GLN 48 100 100 GLN GLN A . n A 1 49 VAL 49 101 101 VAL VAL A . n A 1 50 PHE 50 102 102 PHE PHE A . n A 1 51 GLY 51 103 103 GLY GLY A . n A 1 52 LYS 52 104 104 LYS LYS A . n A 1 53 TRP 53 105 105 TRP TRP A . n A 1 54 HIS 54 106 106 HIS HIS A . n A 1 55 SER 55 107 107 SER SER A . n A 1 56 VAL 56 108 108 VAL VAL A . n A 1 57 PRO 57 109 109 PRO PRO A . n A 1 58 ARG 58 110 110 ARG ARG A . n A 1 59 LYS 59 111 111 LYS LYS A . n A 1 60 GLN 60 112 112 GLN GLN A . n A 1 61 ALA 61 113 113 ALA ALA A . n A 1 62 THR 62 114 114 THR THR A . n A 1 63 TYR 63 115 115 TYR TYR A . n A 1 64 GLY 64 116 116 GLY GLY A . n A 1 65 ASP 65 117 117 ASP ASP A . n A 1 66 ALA 66 118 118 ALA ALA A . n A 1 67 GLY 67 119 119 GLY GLY A . n A 1 68 LEU 68 120 120 LEU LEU A . n A 1 69 THR 69 121 121 THR THR A . n A 1 70 TYR 70 122 122 TYR TYR A . n A 1 71 THR 71 123 123 THR THR A . n A 1 72 PHE 72 124 124 PHE PHE A . n A 1 73 SER 73 125 125 SER SER A . n A 1 74 GLY 74 126 126 GLY GLY A . n A 1 75 LEU 75 127 127 LEU LEU A . n A 1 76 THR 76 128 128 THR THR A . n A 1 77 LEU 77 129 129 LEU LEU A . n A 1 78 SER 78 130 130 SER SER A . n A 1 79 PRO 79 131 131 PRO PRO A . n A 1 80 LYS 80 132 132 LYS LYS A . n A 1 81 PRO 81 133 133 PRO PRO A . n A 1 82 TRP 82 134 134 TRP TRP A . n A 1 83 ILE 83 135 135 ILE ILE A . n A 1 84 PRO 84 136 136 PRO PRO A . n A 1 85 VAL 85 137 137 VAL VAL A . n A 1 86 LEU 86 138 138 LEU LEU A . n A 1 87 GLU 87 139 139 GLU GLU A . n A 1 88 ARG 88 140 140 ARG ARG A . n A 1 89 ILE 89 141 141 ILE ILE A . n A 1 90 ARG 90 142 142 ARG ARG A . n A 1 91 ASP 91 143 143 ASP ASP A . n A 1 92 HIS 92 144 144 HIS HIS A . n A 1 93 VAL 93 145 145 VAL VAL A . n A 1 94 SER 94 146 146 SER SER A . n A 1 95 GLY 95 147 147 GLY GLY A . n A 1 96 VAL 96 148 148 VAL VAL A . n A 1 97 THR 97 149 149 THR THR A . n A 1 98 GLY 98 150 150 GLY GLY A . n A 1 99 GLN 99 151 151 GLN GLN A . n A 1 100 THR 100 152 152 THR THR A . n A 1 101 PHE 101 153 153 PHE PHE A . n A 1 102 ASN 102 154 154 ASN ASN A . n A 1 103 PHE 103 155 155 PHE PHE A . n A 1 104 VAL 104 156 156 VAL VAL A . n A 1 105 LEU 105 157 157 LEU LEU A . n A 1 106 ILE 106 158 158 ILE ILE A . n A 1 107 ASN 107 159 159 ASN ASN A . n A 1 108 ARG 108 160 160 ARG ARG A . n A 1 109 TYR 109 161 161 TYR TYR A . n A 1 110 LYS 110 162 162 LYS LYS A . n A 1 111 ASP 111 163 163 ASP ASP A . n A 1 112 GLY 112 164 164 GLY GLY A . n A 1 113 SER 113 165 165 SER SER A . n A 1 114 ASP 114 166 166 ASP ASP A . n A 1 115 HIS 115 167 167 HIS HIS A . n A 1 116 ILE 116 168 168 ILE ILE A . n A 1 117 CYS 117 169 169 CYS CYS A . n A 1 118 GLU 118 170 170 GLU GLU A . n A 1 119 HIS 119 171 171 HIS HIS A . n A 1 120 ARG 120 172 172 ARG ARG A . n A 1 121 ASP 121 173 173 ASP ASP A . n A 1 122 ASP 122 174 174 ASP ASP A . n A 1 123 GLU 123 175 175 GLU GLU A . n A 1 124 ARG 124 176 176 ARG ARG A . n A 1 125 GLU 125 177 177 GLU GLU A . n A 1 126 LEU 126 178 178 LEU LEU A . n A 1 127 ALA 127 179 179 ALA ALA A . n A 1 128 PRO 128 180 180 PRO PRO A . n A 1 129 GLY 129 181 181 GLY GLY A . n A 1 130 SER 130 182 182 SER SER A . n A 1 131 PRO 131 183 183 PRO PRO A . n A 1 132 ILE 132 184 184 ILE ILE A . n A 1 133 ALA 133 185 185 ALA ALA A . n A 1 134 SER 134 186 186 SER SER A . n A 1 135 VAL 135 187 187 VAL VAL A . n A 1 136 SER 136 188 188 SER SER A . n A 1 137 PHE 137 189 189 PHE PHE A . n A 1 138 GLY 138 190 190 GLY GLY A . n A 1 139 ALA 139 191 191 ALA ALA A . n A 1 140 SER 140 192 192 SER SER A . n A 1 141 ARG 141 193 193 ARG ARG A . n A 1 142 ASP 142 194 194 ASP ASP A . n A 1 143 PHE 143 195 195 PHE PHE A . n A 1 144 VAL 144 196 196 VAL VAL A . n A 1 145 PHE 145 197 197 PHE PHE A . n A 1 146 ARG 146 198 198 ARG ARG A . n A 1 147 HIS 147 199 199 HIS HIS A . n A 1 148 LYS 148 200 200 LYS LYS A . n A 1 149 ASP 149 201 201 ASP ASP A . n A 1 150 SER 150 202 202 SER SER A . n A 1 151 ARG 151 203 203 ARG ARG A . n A 1 152 GLY 152 204 ? ? ? A . n A 1 153 LYS 153 205 ? ? ? A . n A 1 154 SER 154 206 ? ? ? A . n A 1 155 PRO 155 207 207 PRO PRO A . n A 1 156 SER 156 208 208 SER SER A . n A 1 157 ARG 157 209 209 ARG ARG A . n A 1 158 ARG 158 210 210 ARG ARG A . n A 1 159 VAL 159 211 211 VAL VAL A . n A 1 160 ALA 160 212 212 ALA ALA A . n A 1 161 VAL 161 213 213 VAL VAL A . n A 1 162 VAL 162 214 214 VAL VAL A . n A 1 163 ARG 163 215 215 ARG ARG A . n A 1 164 LEU 164 216 216 LEU LEU A . n A 1 165 PRO 165 217 217 PRO PRO A . n A 1 166 LEU 166 218 218 LEU LEU A . n A 1 167 ALA 167 219 219 ALA ALA A . n A 1 168 HIS 168 220 220 HIS HIS A . n A 1 169 GLY 169 221 221 GLY GLY A . n A 1 170 SER 170 222 222 SER SER A . n A 1 171 LEU 171 223 223 LEU LEU A . n A 1 172 LEU 172 224 224 LEU LEU A . n A 1 173 MET 173 225 225 MET MET A . n A 1 174 MET 174 226 226 MET MET A . n A 1 175 ASN 175 227 227 ASN ASN A . n A 1 176 HIS 176 228 228 HIS HIS A . n A 1 177 PRO 177 229 229 PRO PRO A . n A 1 178 THR 178 230 230 THR THR A . n A 1 179 ASN 179 231 231 ASN ASN A . n A 1 180 THR 180 232 232 THR THR A . n A 1 181 HIS 181 233 233 HIS HIS A . n A 1 182 TRP 182 234 234 TRP TRP A . n A 1 183 TYR 183 235 235 TYR TYR A . n A 1 184 HIS 184 236 236 HIS HIS A . n A 1 185 SER 185 237 237 SER SER A . n A 1 186 LEU 186 238 238 LEU LEU A . n A 1 187 PRO 187 239 239 PRO PRO A . n A 1 188 VAL 188 240 240 VAL VAL A . n A 1 189 ARG 189 241 241 ARG ARG A . n A 1 190 LYS 190 242 242 LYS LYS A . n A 1 191 LYS 191 243 243 LYS LYS A . n A 1 192 VAL 192 244 244 VAL VAL A . n A 1 193 LEU 193 245 245 LEU LEU A . n A 1 194 ALA 194 246 246 ALA ALA A . n A 1 195 PRO 195 247 247 PRO PRO A . n A 1 196 ARG 196 248 248 ARG ARG A . n A 1 197 VAL 197 249 249 VAL VAL A . n A 1 198 ASN 198 250 250 ASN ASN A . n A 1 199 LEU 199 251 251 LEU LEU A . n A 1 200 THR 200 252 252 THR THR A . n A 1 201 PHE 201 253 253 PHE PHE A . n A 1 202 ARG 202 254 254 ARG ARG A . n A 1 203 LYS 203 255 255 LYS LYS A . n A 1 204 ILE 204 256 256 ILE ILE A . n A 1 205 LEU 205 257 257 LEU LEU A . n A 1 206 LEU 206 258 258 LEU LEU A . n A 1 207 THR 207 259 ? ? ? A . n A 1 208 LYS 208 260 ? ? ? A . n A 1 209 LYS 209 261 ? ? ? A . n B 2 1 DC 1 259 259 DC CD B . n B 2 2 DT 2 260 260 DT TD B . n B 2 3 DG 3 261 261 DG GD B . n B 2 4 DT 4 262 262 DT TD B . n B 2 5 DC 5 263 263 DC CD B . n B 2 6 DT 6 264 264 DT TD B . n B 2 7 EDA 7 265 265 EDA EA B . n B 2 8 DA 8 266 266 DA AD B . n B 2 9 DC 9 267 267 DC CD B . n B 2 10 DT 10 268 268 DT TD B . n B 2 11 DG 11 269 269 DG GD B . n B 2 12 DC 12 270 270 DC CD B . n B 2 13 DG 13 271 271 DG GD B . n C 3 1 DT 1 272 272 DT TD C . n C 3 2 DC 2 273 273 DC CD C . n C 3 3 DG 3 274 274 DG GD C . n C 3 4 DC 4 275 275 DC CD C . n C 3 5 DA 5 276 276 DA AD C . n C 3 6 DG 6 277 277 DG GD C . n C 3 7 DT 7 278 278 DT TD C . n C 3 8 DT 8 279 279 DT TD C . n C 3 9 DA 9 280 280 DA AD C . n C 3 10 DG 10 281 281 DG GD C . n C 3 11 DA 11 282 282 DA AD C . n C 3 12 DC 12 283 283 DC CD C . n C 3 13 DA 13 284 284 DA AD C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN 1 1 1 MN MN A . E 5 AKG 1 262 1 AKG AKG A . F 6 XL3 1 1 1 XL3 XL3 B . G 7 HOH 1 2 2 HOH HOH A . G 7 HOH 2 3 3 HOH HOH A . G 7 HOH 3 4 4 HOH HOH A . G 7 HOH 4 5 5 HOH HOH A . G 7 HOH 5 6 6 HOH HOH A . G 7 HOH 6 7 7 HOH HOH A . G 7 HOH 7 8 8 HOH HOH A . G 7 HOH 8 9 9 HOH HOH A . G 7 HOH 9 10 10 HOH HOH A . G 7 HOH 10 11 11 HOH HOH A . G 7 HOH 11 263 1 HOH HOH A . H 7 HOH 1 14 14 HOH HOH B . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id EDA _pdbx_struct_mod_residue.label_seq_id 7 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id EDA _pdbx_struct_mod_residue.auth_seq_id 265 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DA _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3850 ? 1 MORE -14 ? 1 'SSA (A^2)' 13160 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 119 ? A HIS 171 ? 1_555 MN ? D MN . ? A MN 1 ? 1_555 OD1 ? A ASP 121 ? A ASP 173 ? 1_555 72.3 ? 2 NE2 ? A HIS 119 ? A HIS 171 ? 1_555 MN ? D MN . ? A MN 1 ? 1_555 NE2 ? A HIS 184 ? A HIS 236 ? 1_555 78.2 ? 3 OD1 ? A ASP 121 ? A ASP 173 ? 1_555 MN ? D MN . ? A MN 1 ? 1_555 NE2 ? A HIS 184 ? A HIS 236 ? 1_555 71.2 ? 4 NE2 ? A HIS 119 ? A HIS 171 ? 1_555 MN ? D MN . ? A MN 1 ? 1_555 O5 ? E AKG . ? A AKG 262 ? 1_555 113.4 ? 5 OD1 ? A ASP 121 ? A ASP 173 ? 1_555 MN ? D MN . ? A MN 1 ? 1_555 O5 ? E AKG . ? A AKG 262 ? 1_555 167.5 ? 6 NE2 ? A HIS 184 ? A HIS 236 ? 1_555 MN ? D MN . ? A MN 1 ? 1_555 O5 ? E AKG . ? A AKG 262 ? 1_555 98.4 ? 7 NE2 ? A HIS 119 ? A HIS 171 ? 1_555 MN ? D MN . ? A MN 1 ? 1_555 O2 ? E AKG . ? A AKG 262 ? 1_555 118.3 ? 8 OD1 ? A ASP 121 ? A ASP 173 ? 1_555 MN ? D MN . ? A MN 1 ? 1_555 O2 ? E AKG . ? A AKG 262 ? 1_555 112.2 ? 9 NE2 ? A HIS 184 ? A HIS 236 ? 1_555 MN ? D MN . ? A MN 1 ? 1_555 O2 ? E AKG . ? A AKG 262 ? 1_555 163.5 ? 10 O5 ? E AKG . ? A AKG 262 ? 1_555 MN ? D MN . ? A MN 1 ? 1_555 O2 ? E AKG . ? A AKG 262 ? 1_555 75.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-06-06 2 'Structure model' 1 1 2013-07-03 3 'Structure model' 1 2 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_ref_seq_dif 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.value' 16 3 'Structure model' '_struct_conn.pdbx_dist_value' 17 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 18 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 30 3 'Structure model' '_struct_ref_seq_dif.details' 31 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 32 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 33 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 18.0259 27.1498 -2.9861 0.0198 0.1312 0.0444 0.0246 -0.0060 -0.0075 2.2252 1.1203 0.7439 0.4338 0.0328 -0.2216 0.1399 0.1336 -0.0604 -0.0735 -0.0427 -0.0205 0.0380 0.0269 -0.0972 'X-RAY DIFFRACTION' 2 ? refined 1.4140 11.9394 -1.7546 0.2058 0.1983 0.1405 -0.0221 -0.1633 0.0023 2.1571 0.5323 0.9171 -0.6849 0.9779 -0.5523 0.3545 0.0458 -0.4015 -0.0642 0.2977 0.0726 0.3448 0.0402 -0.6522 'X-RAY DIFFRACTION' 3 ? refined 1.8682 12.9519 0.0027 0.1638 0.1594 0.1023 0.0081 -0.0965 0.0139 1.2979 0.8752 0.4838 0.5092 0.4915 0.6248 0.2184 -0.0402 -0.3065 0.0277 0.0047 0.1699 0.1287 0.0102 -0.2231 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 55 ? ? A 258 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 259 ? ? B 271 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 C 272 ? ? C 284 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASES phasing . ? 2 REFMAC refinement 5.5.0110 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 SG _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 CYS _pdbx_validate_close_contact.auth_seq_id_1 169 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 SG _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 XL3 _pdbx_validate_close_contact.auth_seq_id_2 1 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.05 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" B DC 259 ? ? "O3'" B DC 259 ? ? P B DT 260 ? ? 127.43 119.70 7.73 1.20 Y 2 1 "O4'" B DT 260 ? ? "C1'" B DT 260 ? ? N1 B DT 260 ? ? 111.00 108.30 2.70 0.30 N 3 1 "O4'" B DG 261 ? ? "C1'" B DG 261 ? ? N9 B DG 261 ? ? 112.85 108.30 4.55 0.30 N 4 1 "O4'" B DT 262 ? ? "C1'" B DT 262 ? ? N1 B DT 262 ? ? 110.71 108.30 2.41 0.30 N 5 1 "O4'" B DC 263 ? ? "C1'" B DC 263 ? ? N1 B DC 263 ? ? 110.73 108.30 2.43 0.30 N 6 1 "O4'" B DG 269 ? ? "C1'" B DG 269 ? ? N9 B DG 269 ? ? 110.67 108.30 2.37 0.30 N 7 1 "O4'" B DC 270 ? ? "C1'" B DC 270 ? ? N1 B DC 270 ? ? 110.19 108.30 1.89 0.30 N 8 1 "O4'" C DG 274 ? ? "C1'" C DG 274 ? ? N9 C DG 274 ? ? 113.96 108.30 5.66 0.30 N 9 1 "O4'" C DG 277 ? ? "C1'" C DG 277 ? ? N9 C DG 277 ? ? 112.77 108.30 4.47 0.30 N 10 1 "C3'" C DG 281 ? ? "O3'" C DG 281 ? ? P C DA 282 ? ? 131.11 119.70 11.41 1.20 Y 11 1 "C3'" C DA 282 ? ? "O3'" C DA 282 ? ? P C DC 283 ? ? 128.89 119.70 9.19 1.20 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 110 ? ? 165.97 -175.79 2 1 ASP A 163 ? ? -173.33 -174.81 3 1 ASP A 173 ? ? -68.75 93.80 4 1 GLU A 177 ? ? -66.88 6.12 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 53 ? A GLY 1 2 1 Y 1 A SER 54 ? A SER 2 3 1 Y 1 A GLY 204 ? A GLY 152 4 1 Y 1 A LYS 205 ? A LYS 153 5 1 Y 1 A SER 206 ? A SER 154 6 1 Y 1 A THR 259 ? A THR 207 7 1 Y 1 A LYS 260 ? A LYS 208 8 1 Y 1 A LYS 261 ? A LYS 209 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AKG C1 C N N 1 AKG O1 O N N 2 AKG O2 O N N 3 AKG C2 C N N 4 AKG O5 O N N 5 AKG C3 C N N 6 AKG C4 C N N 7 AKG C5 C N N 8 AKG O3 O N N 9 AKG O4 O N N 10 AKG HO2 H N N 11 AKG H31 H N N 12 AKG H32 H N N 13 AKG H41 H N N 14 AKG H42 H N N 15 AKG HO4 H N N 16 ALA N N N N 17 ALA CA C N S 18 ALA C C N N 19 ALA O O N N 20 ALA CB C N N 21 ALA OXT O N N 22 ALA H H N N 23 ALA H2 H N N 24 ALA HA H N N 25 ALA HB1 H N N 26 ALA HB2 H N N 27 ALA HB3 H N N 28 ALA HXT H N N 29 ARG N N N N 30 ARG CA C N S 31 ARG C C N N 32 ARG O O N N 33 ARG CB C N N 34 ARG CG C N N 35 ARG CD C N N 36 ARG NE N N N 37 ARG CZ C N N 38 ARG NH1 N N N 39 ARG NH2 N N N 40 ARG OXT O N N 41 ARG H H N N 42 ARG H2 H N N 43 ARG HA H N N 44 ARG HB2 H N N 45 ARG HB3 H N N 46 ARG HG2 H N N 47 ARG HG3 H N N 48 ARG HD2 H N N 49 ARG HD3 H N N 50 ARG HE H N N 51 ARG HH11 H N N 52 ARG HH12 H N N 53 ARG HH21 H N N 54 ARG HH22 H N N 55 ARG HXT H N N 56 ASN N N N N 57 ASN CA C N S 58 ASN C C N N 59 ASN O O N N 60 ASN CB C N N 61 ASN CG C N N 62 ASN OD1 O N N 63 ASN ND2 N N N 64 ASN OXT O N N 65 ASN H H N N 66 ASN H2 H N N 67 ASN HA H N N 68 ASN HB2 H N N 69 ASN HB3 H N N 70 ASN HD21 H N N 71 ASN HD22 H N N 72 ASN HXT H N N 73 ASP N N N N 74 ASP CA C N S 75 ASP C C N N 76 ASP O O N N 77 ASP CB C N N 78 ASP CG C N N 79 ASP OD1 O N N 80 ASP OD2 O N N 81 ASP OXT O N N 82 ASP H H N N 83 ASP H2 H N N 84 ASP HA H N N 85 ASP HB2 H N N 86 ASP HB3 H N N 87 ASP HD2 H N N 88 ASP HXT H N N 89 CYS N N N N 90 CYS CA C N R 91 CYS C C N N 92 CYS O O N N 93 CYS CB C N N 94 CYS SG S N N 95 CYS OXT O N N 96 CYS H H N N 97 CYS H2 H N N 98 CYS HA H N N 99 CYS HB2 H N N 100 CYS HB3 H N N 101 CYS HG H N N 102 CYS HXT H N N 103 DA OP3 O N N 104 DA P P N N 105 DA OP1 O N N 106 DA OP2 O N N 107 DA "O5'" O N N 108 DA "C5'" C N N 109 DA "C4'" C N R 110 DA "O4'" O N N 111 DA "C3'" C N S 112 DA "O3'" O N N 113 DA "C2'" C N N 114 DA "C1'" C N R 115 DA N9 N Y N 116 DA C8 C Y N 117 DA N7 N Y N 118 DA C5 C Y N 119 DA C6 C Y N 120 DA N6 N N N 121 DA N1 N Y N 122 DA C2 C Y N 123 DA N3 N Y N 124 DA C4 C Y N 125 DA HOP3 H N N 126 DA HOP2 H N N 127 DA "H5'" H N N 128 DA "H5''" H N N 129 DA "H4'" H N N 130 DA "H3'" H N N 131 DA "HO3'" H N N 132 DA "H2'" H N N 133 DA "H2''" H N N 134 DA "H1'" H N N 135 DA H8 H N N 136 DA H61 H N N 137 DA H62 H N N 138 DA H2 H N N 139 DC OP3 O N N 140 DC P P N N 141 DC OP1 O N N 142 DC OP2 O N N 143 DC "O5'" O N N 144 DC "C5'" C N N 145 DC "C4'" C N R 146 DC "O4'" O N N 147 DC "C3'" C N S 148 DC "O3'" O N N 149 DC "C2'" C N N 150 DC "C1'" C N R 151 DC N1 N N N 152 DC C2 C N N 153 DC O2 O N N 154 DC N3 N N N 155 DC C4 C N N 156 DC N4 N N N 157 DC C5 C N N 158 DC C6 C N N 159 DC HOP3 H N N 160 DC HOP2 H N N 161 DC "H5'" H N N 162 DC "H5''" H N N 163 DC "H4'" H N N 164 DC "H3'" H N N 165 DC "HO3'" H N N 166 DC "H2'" H N N 167 DC "H2''" H N N 168 DC "H1'" H N N 169 DC H41 H N N 170 DC H42 H N N 171 DC H5 H N N 172 DC H6 H N N 173 DG OP3 O N N 174 DG P P N N 175 DG OP1 O N N 176 DG OP2 O N N 177 DG "O5'" O N N 178 DG "C5'" C N N 179 DG "C4'" C N R 180 DG "O4'" O N N 181 DG "C3'" C N S 182 DG "O3'" O N N 183 DG "C2'" C N N 184 DG "C1'" C N R 185 DG N9 N Y N 186 DG C8 C Y N 187 DG N7 N Y N 188 DG C5 C Y N 189 DG C6 C N N 190 DG O6 O N N 191 DG N1 N N N 192 DG C2 C N N 193 DG N2 N N N 194 DG N3 N N N 195 DG C4 C Y N 196 DG HOP3 H N N 197 DG HOP2 H N N 198 DG "H5'" H N N 199 DG "H5''" H N N 200 DG "H4'" H N N 201 DG "H3'" H N N 202 DG "HO3'" H N N 203 DG "H2'" H N N 204 DG "H2''" H N N 205 DG "H1'" H N N 206 DG H8 H N N 207 DG H1 H N N 208 DG H21 H N N 209 DG H22 H N N 210 DT OP3 O N N 211 DT P P N N 212 DT OP1 O N N 213 DT OP2 O N N 214 DT "O5'" O N N 215 DT "C5'" C N N 216 DT "C4'" C N R 217 DT "O4'" O N N 218 DT "C3'" C N S 219 DT "O3'" O N N 220 DT "C2'" C N N 221 DT "C1'" C N R 222 DT N1 N N N 223 DT C2 C N N 224 DT O2 O N N 225 DT N3 N N N 226 DT C4 C N N 227 DT O4 O N N 228 DT C5 C N N 229 DT C7 C N N 230 DT C6 C N N 231 DT HOP3 H N N 232 DT HOP2 H N N 233 DT "H5'" H N N 234 DT "H5''" H N N 235 DT "H4'" H N N 236 DT "H3'" H N N 237 DT "HO3'" H N N 238 DT "H2'" H N N 239 DT "H2''" H N N 240 DT "H1'" H N N 241 DT H3 H N N 242 DT H71 H N N 243 DT H72 H N N 244 DT H73 H N N 245 DT H6 H N N 246 EDA P P N N 247 EDA OP1 O N N 248 EDA OP2 O N N 249 EDA OP3 O N N 250 EDA "O5'" O N N 251 EDA N9 N Y N 252 EDA C4 C Y N 253 EDA N3 N Y N 254 EDA C2 C Y N 255 EDA N1 N Y N 256 EDA C6 C Y N 257 EDA C10 C Y N 258 EDA C11 C Y N 259 EDA N6 N Y N 260 EDA C5 C Y N 261 EDA N7 N Y N 262 EDA C8 C Y N 263 EDA "C2'" C N N 264 EDA "C5'" C N N 265 EDA "C4'" C N R 266 EDA "O4'" O N N 267 EDA "C1'" C N R 268 EDA "C3'" C N S 269 EDA "O3'" O N N 270 EDA HOP2 H N N 271 EDA HOP3 H N N 272 EDA H2 H N N 273 EDA H10 H N N 274 EDA H11 H N N 275 EDA H8 H N N 276 EDA "H2'" H N N 277 EDA "H2''" H N N 278 EDA "H5'" H N N 279 EDA "H5''" H N N 280 EDA "H4'" H N N 281 EDA "H1'" H N N 282 EDA "H3'" H N N 283 EDA "HO3'" H N N 284 GLN N N N N 285 GLN CA C N S 286 GLN C C N N 287 GLN O O N N 288 GLN CB C N N 289 GLN CG C N N 290 GLN CD C N N 291 GLN OE1 O N N 292 GLN NE2 N N N 293 GLN OXT O N N 294 GLN H H N N 295 GLN H2 H N N 296 GLN HA H N N 297 GLN HB2 H N N 298 GLN HB3 H N N 299 GLN HG2 H N N 300 GLN HG3 H N N 301 GLN HE21 H N N 302 GLN HE22 H N N 303 GLN HXT H N N 304 GLU N N N N 305 GLU CA C N S 306 GLU C C N N 307 GLU O O N N 308 GLU CB C N N 309 GLU CG C N N 310 GLU CD C N N 311 GLU OE1 O N N 312 GLU OE2 O N N 313 GLU OXT O N N 314 GLU H H N N 315 GLU H2 H N N 316 GLU HA H N N 317 GLU HB2 H N N 318 GLU HB3 H N N 319 GLU HG2 H N N 320 GLU HG3 H N N 321 GLU HE2 H N N 322 GLU HXT H N N 323 GLY N N N N 324 GLY CA C N N 325 GLY C C N N 326 GLY O O N N 327 GLY OXT O N N 328 GLY H H N N 329 GLY H2 H N N 330 GLY HA2 H N N 331 GLY HA3 H N N 332 GLY HXT H N N 333 HIS N N N N 334 HIS CA C N S 335 HIS C C N N 336 HIS O O N N 337 HIS CB C N N 338 HIS CG C Y N 339 HIS ND1 N Y N 340 HIS CD2 C Y N 341 HIS CE1 C Y N 342 HIS NE2 N Y N 343 HIS OXT O N N 344 HIS H H N N 345 HIS H2 H N N 346 HIS HA H N N 347 HIS HB2 H N N 348 HIS HB3 H N N 349 HIS HD1 H N N 350 HIS HD2 H N N 351 HIS HE1 H N N 352 HIS HE2 H N N 353 HIS HXT H N N 354 HOH O O N N 355 HOH H1 H N N 356 HOH H2 H N N 357 ILE N N N N 358 ILE CA C N S 359 ILE C C N N 360 ILE O O N N 361 ILE CB C N S 362 ILE CG1 C N N 363 ILE CG2 C N N 364 ILE CD1 C N N 365 ILE OXT O N N 366 ILE H H N N 367 ILE H2 H N N 368 ILE HA H N N 369 ILE HB H N N 370 ILE HG12 H N N 371 ILE HG13 H N N 372 ILE HG21 H N N 373 ILE HG22 H N N 374 ILE HG23 H N N 375 ILE HD11 H N N 376 ILE HD12 H N N 377 ILE HD13 H N N 378 ILE HXT H N N 379 LEU N N N N 380 LEU CA C N S 381 LEU C C N N 382 LEU O O N N 383 LEU CB C N N 384 LEU CG C N N 385 LEU CD1 C N N 386 LEU CD2 C N N 387 LEU OXT O N N 388 LEU H H N N 389 LEU H2 H N N 390 LEU HA H N N 391 LEU HB2 H N N 392 LEU HB3 H N N 393 LEU HG H N N 394 LEU HD11 H N N 395 LEU HD12 H N N 396 LEU HD13 H N N 397 LEU HD21 H N N 398 LEU HD22 H N N 399 LEU HD23 H N N 400 LEU HXT H N N 401 LYS N N N N 402 LYS CA C N S 403 LYS C C N N 404 LYS O O N N 405 LYS CB C N N 406 LYS CG C N N 407 LYS CD C N N 408 LYS CE C N N 409 LYS NZ N N N 410 LYS OXT O N N 411 LYS H H N N 412 LYS H2 H N N 413 LYS HA H N N 414 LYS HB2 H N N 415 LYS HB3 H N N 416 LYS HG2 H N N 417 LYS HG3 H N N 418 LYS HD2 H N N 419 LYS HD3 H N N 420 LYS HE2 H N N 421 LYS HE3 H N N 422 LYS HZ1 H N N 423 LYS HZ2 H N N 424 LYS HZ3 H N N 425 LYS HXT H N N 426 MET N N N N 427 MET CA C N S 428 MET C C N N 429 MET O O N N 430 MET CB C N N 431 MET CG C N N 432 MET SD S N N 433 MET CE C N N 434 MET OXT O N N 435 MET H H N N 436 MET H2 H N N 437 MET HA H N N 438 MET HB2 H N N 439 MET HB3 H N N 440 MET HG2 H N N 441 MET HG3 H N N 442 MET HE1 H N N 443 MET HE2 H N N 444 MET HE3 H N N 445 MET HXT H N N 446 MN MN MN N N 447 PHE N N N N 448 PHE CA C N S 449 PHE C C N N 450 PHE O O N N 451 PHE CB C N N 452 PHE CG C Y N 453 PHE CD1 C Y N 454 PHE CD2 C Y N 455 PHE CE1 C Y N 456 PHE CE2 C Y N 457 PHE CZ C Y N 458 PHE OXT O N N 459 PHE H H N N 460 PHE H2 H N N 461 PHE HA H N N 462 PHE HB2 H N N 463 PHE HB3 H N N 464 PHE HD1 H N N 465 PHE HD2 H N N 466 PHE HE1 H N N 467 PHE HE2 H N N 468 PHE HZ H N N 469 PHE HXT H N N 470 PRO N N N N 471 PRO CA C N S 472 PRO C C N N 473 PRO O O N N 474 PRO CB C N N 475 PRO CG C N N 476 PRO CD C N N 477 PRO OXT O N N 478 PRO H H N N 479 PRO HA H N N 480 PRO HB2 H N N 481 PRO HB3 H N N 482 PRO HG2 H N N 483 PRO HG3 H N N 484 PRO HD2 H N N 485 PRO HD3 H N N 486 PRO HXT H N N 487 SER N N N N 488 SER CA C N S 489 SER C C N N 490 SER O O N N 491 SER CB C N N 492 SER OG O N N 493 SER OXT O N N 494 SER H H N N 495 SER H2 H N N 496 SER HA H N N 497 SER HB2 H N N 498 SER HB3 H N N 499 SER HG H N N 500 SER HXT H N N 501 THR N N N N 502 THR CA C N S 503 THR C C N N 504 THR O O N N 505 THR CB C N R 506 THR OG1 O N N 507 THR CG2 C N N 508 THR OXT O N N 509 THR H H N N 510 THR H2 H N N 511 THR HA H N N 512 THR HB H N N 513 THR HG1 H N N 514 THR HG21 H N N 515 THR HG22 H N N 516 THR HG23 H N N 517 THR HXT H N N 518 TRP N N N N 519 TRP CA C N S 520 TRP C C N N 521 TRP O O N N 522 TRP CB C N N 523 TRP CG C Y N 524 TRP CD1 C Y N 525 TRP CD2 C Y N 526 TRP NE1 N Y N 527 TRP CE2 C Y N 528 TRP CE3 C Y N 529 TRP CZ2 C Y N 530 TRP CZ3 C Y N 531 TRP CH2 C Y N 532 TRP OXT O N N 533 TRP H H N N 534 TRP H2 H N N 535 TRP HA H N N 536 TRP HB2 H N N 537 TRP HB3 H N N 538 TRP HD1 H N N 539 TRP HE1 H N N 540 TRP HE3 H N N 541 TRP HZ2 H N N 542 TRP HZ3 H N N 543 TRP HH2 H N N 544 TRP HXT H N N 545 TYR N N N N 546 TYR CA C N S 547 TYR C C N N 548 TYR O O N N 549 TYR CB C N N 550 TYR CG C Y N 551 TYR CD1 C Y N 552 TYR CD2 C Y N 553 TYR CE1 C Y N 554 TYR CE2 C Y N 555 TYR CZ C Y N 556 TYR OH O N N 557 TYR OXT O N N 558 TYR H H N N 559 TYR H2 H N N 560 TYR HA H N N 561 TYR HB2 H N N 562 TYR HB3 H N N 563 TYR HD1 H N N 564 TYR HD2 H N N 565 TYR HE1 H N N 566 TYR HE2 H N N 567 TYR HH H N N 568 TYR HXT H N N 569 VAL N N N N 570 VAL CA C N S 571 VAL C C N N 572 VAL O O N N 573 VAL CB C N N 574 VAL CG1 C N N 575 VAL CG2 C N N 576 VAL OXT O N N 577 VAL H H N N 578 VAL H2 H N N 579 VAL HA H N N 580 VAL HB H N N 581 VAL HG11 H N N 582 VAL HG12 H N N 583 VAL HG13 H N N 584 VAL HG21 H N N 585 VAL HG22 H N N 586 VAL HG23 H N N 587 VAL HXT H N N 588 XL3 CA C N N 589 XL3 CB C N N 590 XL3 CC C N N 591 XL3 SG S N N 592 XL3 HA H N N 593 XL3 HAA H N N 594 XL3 HAB H N N 595 XL3 HB H N N 596 XL3 HBA H N N 597 XL3 HC H N N 598 XL3 HCA H N N 599 XL3 HSG H N N 600 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AKG C1 O1 doub N N 1 AKG C1 O2 sing N N 2 AKG C1 C2 sing N N 3 AKG O2 HO2 sing N N 4 AKG C2 O5 doub N N 5 AKG C2 C3 sing N N 6 AKG C3 C4 sing N N 7 AKG C3 H31 sing N N 8 AKG C3 H32 sing N N 9 AKG C4 C5 sing N N 10 AKG C4 H41 sing N N 11 AKG C4 H42 sing N N 12 AKG C5 O3 doub N N 13 AKG C5 O4 sing N N 14 AKG O4 HO4 sing N N 15 ALA N CA sing N N 16 ALA N H sing N N 17 ALA N H2 sing N N 18 ALA CA C sing N N 19 ALA CA CB sing N N 20 ALA CA HA sing N N 21 ALA C O doub N N 22 ALA C OXT sing N N 23 ALA CB HB1 sing N N 24 ALA CB HB2 sing N N 25 ALA CB HB3 sing N N 26 ALA OXT HXT sing N N 27 ARG N CA sing N N 28 ARG N H sing N N 29 ARG N H2 sing N N 30 ARG CA C sing N N 31 ARG CA CB sing N N 32 ARG CA HA sing N N 33 ARG C O doub N N 34 ARG C OXT sing N N 35 ARG CB CG sing N N 36 ARG CB HB2 sing N N 37 ARG CB HB3 sing N N 38 ARG CG CD sing N N 39 ARG CG HG2 sing N N 40 ARG CG HG3 sing N N 41 ARG CD NE sing N N 42 ARG CD HD2 sing N N 43 ARG CD HD3 sing N N 44 ARG NE CZ sing N N 45 ARG NE HE sing N N 46 ARG CZ NH1 sing N N 47 ARG CZ NH2 doub N N 48 ARG NH1 HH11 sing N N 49 ARG NH1 HH12 sing N N 50 ARG NH2 HH21 sing N N 51 ARG NH2 HH22 sing N N 52 ARG OXT HXT sing N N 53 ASN N CA sing N N 54 ASN N H sing N N 55 ASN N H2 sing N N 56 ASN CA C sing N N 57 ASN CA CB sing N N 58 ASN CA HA sing N N 59 ASN C O doub N N 60 ASN C OXT sing N N 61 ASN CB CG sing N N 62 ASN CB HB2 sing N N 63 ASN CB HB3 sing N N 64 ASN CG OD1 doub N N 65 ASN CG ND2 sing N N 66 ASN ND2 HD21 sing N N 67 ASN ND2 HD22 sing N N 68 ASN OXT HXT sing N N 69 ASP N CA sing N N 70 ASP N H sing N N 71 ASP N H2 sing N N 72 ASP CA C sing N N 73 ASP CA CB sing N N 74 ASP CA HA sing N N 75 ASP C O doub N N 76 ASP C OXT sing N N 77 ASP CB CG sing N N 78 ASP CB HB2 sing N N 79 ASP CB HB3 sing N N 80 ASP CG OD1 doub N N 81 ASP CG OD2 sing N N 82 ASP OD2 HD2 sing N N 83 ASP OXT HXT sing N N 84 CYS N CA sing N N 85 CYS N H sing N N 86 CYS N H2 sing N N 87 CYS CA C sing N N 88 CYS CA CB sing N N 89 CYS CA HA sing N N 90 CYS C O doub N N 91 CYS C OXT sing N N 92 CYS CB SG sing N N 93 CYS CB HB2 sing N N 94 CYS CB HB3 sing N N 95 CYS SG HG sing N N 96 CYS OXT HXT sing N N 97 DA OP3 P sing N N 98 DA OP3 HOP3 sing N N 99 DA P OP1 doub N N 100 DA P OP2 sing N N 101 DA P "O5'" sing N N 102 DA OP2 HOP2 sing N N 103 DA "O5'" "C5'" sing N N 104 DA "C5'" "C4'" sing N N 105 DA "C5'" "H5'" sing N N 106 DA "C5'" "H5''" sing N N 107 DA "C4'" "O4'" sing N N 108 DA "C4'" "C3'" sing N N 109 DA "C4'" "H4'" sing N N 110 DA "O4'" "C1'" sing N N 111 DA "C3'" "O3'" sing N N 112 DA "C3'" "C2'" sing N N 113 DA "C3'" "H3'" sing N N 114 DA "O3'" "HO3'" sing N N 115 DA "C2'" "C1'" sing N N 116 DA "C2'" "H2'" sing N N 117 DA "C2'" "H2''" sing N N 118 DA "C1'" N9 sing N N 119 DA "C1'" "H1'" sing N N 120 DA N9 C8 sing Y N 121 DA N9 C4 sing Y N 122 DA C8 N7 doub Y N 123 DA C8 H8 sing N N 124 DA N7 C5 sing Y N 125 DA C5 C6 sing Y N 126 DA C5 C4 doub Y N 127 DA C6 N6 sing N N 128 DA C6 N1 doub Y N 129 DA N6 H61 sing N N 130 DA N6 H62 sing N N 131 DA N1 C2 sing Y N 132 DA C2 N3 doub Y N 133 DA C2 H2 sing N N 134 DA N3 C4 sing Y N 135 DC OP3 P sing N N 136 DC OP3 HOP3 sing N N 137 DC P OP1 doub N N 138 DC P OP2 sing N N 139 DC P "O5'" sing N N 140 DC OP2 HOP2 sing N N 141 DC "O5'" "C5'" sing N N 142 DC "C5'" "C4'" sing N N 143 DC "C5'" "H5'" sing N N 144 DC "C5'" "H5''" sing N N 145 DC "C4'" "O4'" sing N N 146 DC "C4'" "C3'" sing N N 147 DC "C4'" "H4'" sing N N 148 DC "O4'" "C1'" sing N N 149 DC "C3'" "O3'" sing N N 150 DC "C3'" "C2'" sing N N 151 DC "C3'" "H3'" sing N N 152 DC "O3'" "HO3'" sing N N 153 DC "C2'" "C1'" sing N N 154 DC "C2'" "H2'" sing N N 155 DC "C2'" "H2''" sing N N 156 DC "C1'" N1 sing N N 157 DC "C1'" "H1'" sing N N 158 DC N1 C2 sing N N 159 DC N1 C6 sing N N 160 DC C2 O2 doub N N 161 DC C2 N3 sing N N 162 DC N3 C4 doub N N 163 DC C4 N4 sing N N 164 DC C4 C5 sing N N 165 DC N4 H41 sing N N 166 DC N4 H42 sing N N 167 DC C5 C6 doub N N 168 DC C5 H5 sing N N 169 DC C6 H6 sing N N 170 DG OP3 P sing N N 171 DG OP3 HOP3 sing N N 172 DG P OP1 doub N N 173 DG P OP2 sing N N 174 DG P "O5'" sing N N 175 DG OP2 HOP2 sing N N 176 DG "O5'" "C5'" sing N N 177 DG "C5'" "C4'" sing N N 178 DG "C5'" "H5'" sing N N 179 DG "C5'" "H5''" sing N N 180 DG "C4'" "O4'" sing N N 181 DG "C4'" "C3'" sing N N 182 DG "C4'" "H4'" sing N N 183 DG "O4'" "C1'" sing N N 184 DG "C3'" "O3'" sing N N 185 DG "C3'" "C2'" sing N N 186 DG "C3'" "H3'" sing N N 187 DG "O3'" "HO3'" sing N N 188 DG "C2'" "C1'" sing N N 189 DG "C2'" "H2'" sing N N 190 DG "C2'" "H2''" sing N N 191 DG "C1'" N9 sing N N 192 DG "C1'" "H1'" sing N N 193 DG N9 C8 sing Y N 194 DG N9 C4 sing Y N 195 DG C8 N7 doub Y N 196 DG C8 H8 sing N N 197 DG N7 C5 sing Y N 198 DG C5 C6 sing N N 199 DG C5 C4 doub Y N 200 DG C6 O6 doub N N 201 DG C6 N1 sing N N 202 DG N1 C2 sing N N 203 DG N1 H1 sing N N 204 DG C2 N2 sing N N 205 DG C2 N3 doub N N 206 DG N2 H21 sing N N 207 DG N2 H22 sing N N 208 DG N3 C4 sing N N 209 DT OP3 P sing N N 210 DT OP3 HOP3 sing N N 211 DT P OP1 doub N N 212 DT P OP2 sing N N 213 DT P "O5'" sing N N 214 DT OP2 HOP2 sing N N 215 DT "O5'" "C5'" sing N N 216 DT "C5'" "C4'" sing N N 217 DT "C5'" "H5'" sing N N 218 DT "C5'" "H5''" sing N N 219 DT "C4'" "O4'" sing N N 220 DT "C4'" "C3'" sing N N 221 DT "C4'" "H4'" sing N N 222 DT "O4'" "C1'" sing N N 223 DT "C3'" "O3'" sing N N 224 DT "C3'" "C2'" sing N N 225 DT "C3'" "H3'" sing N N 226 DT "O3'" "HO3'" sing N N 227 DT "C2'" "C1'" sing N N 228 DT "C2'" "H2'" sing N N 229 DT "C2'" "H2''" sing N N 230 DT "C1'" N1 sing N N 231 DT "C1'" "H1'" sing N N 232 DT N1 C2 sing N N 233 DT N1 C6 sing N N 234 DT C2 O2 doub N N 235 DT C2 N3 sing N N 236 DT N3 C4 sing N N 237 DT N3 H3 sing N N 238 DT C4 O4 doub N N 239 DT C4 C5 sing N N 240 DT C5 C7 sing N N 241 DT C5 C6 doub N N 242 DT C7 H71 sing N N 243 DT C7 H72 sing N N 244 DT C7 H73 sing N N 245 DT C6 H6 sing N N 246 EDA P OP1 doub N N 247 EDA P OP2 sing N N 248 EDA P OP3 sing N N 249 EDA P "O5'" sing N N 250 EDA OP2 HOP2 sing N N 251 EDA OP3 HOP3 sing N N 252 EDA "O5'" "C5'" sing N N 253 EDA N9 C4 sing Y N 254 EDA N9 C8 sing Y N 255 EDA N9 "C1'" sing N N 256 EDA C4 N3 sing Y N 257 EDA C4 C5 doub Y N 258 EDA N3 C2 doub Y N 259 EDA C2 N1 sing Y N 260 EDA C2 H2 sing N N 261 EDA N1 C6 sing Y N 262 EDA N1 C10 sing Y N 263 EDA C6 N6 doub Y N 264 EDA C6 C5 sing Y N 265 EDA C10 C11 doub Y N 266 EDA C10 H10 sing N N 267 EDA C11 N6 sing Y N 268 EDA C11 H11 sing N N 269 EDA C5 N7 sing Y N 270 EDA N7 C8 doub Y N 271 EDA C8 H8 sing N N 272 EDA "C2'" "C1'" sing N N 273 EDA "C2'" "C3'" sing N N 274 EDA "C2'" "H2'" sing N N 275 EDA "C2'" "H2''" sing N N 276 EDA "C5'" "C4'" sing N N 277 EDA "C5'" "H5'" sing N N 278 EDA "C5'" "H5''" sing N N 279 EDA "C4'" "O4'" sing N N 280 EDA "C4'" "C3'" sing N N 281 EDA "C4'" "H4'" sing N N 282 EDA "O4'" "C1'" sing N N 283 EDA "C1'" "H1'" sing N N 284 EDA "C3'" "O3'" sing N N 285 EDA "C3'" "H3'" sing N N 286 EDA "O3'" "HO3'" sing N N 287 GLN N CA sing N N 288 GLN N H sing N N 289 GLN N H2 sing N N 290 GLN CA C sing N N 291 GLN CA CB sing N N 292 GLN CA HA sing N N 293 GLN C O doub N N 294 GLN C OXT sing N N 295 GLN CB CG sing N N 296 GLN CB HB2 sing N N 297 GLN CB HB3 sing N N 298 GLN CG CD sing N N 299 GLN CG HG2 sing N N 300 GLN CG HG3 sing N N 301 GLN CD OE1 doub N N 302 GLN CD NE2 sing N N 303 GLN NE2 HE21 sing N N 304 GLN NE2 HE22 sing N N 305 GLN OXT HXT sing N N 306 GLU N CA sing N N 307 GLU N H sing N N 308 GLU N H2 sing N N 309 GLU CA C sing N N 310 GLU CA CB sing N N 311 GLU CA HA sing N N 312 GLU C O doub N N 313 GLU C OXT sing N N 314 GLU CB CG sing N N 315 GLU CB HB2 sing N N 316 GLU CB HB3 sing N N 317 GLU CG CD sing N N 318 GLU CG HG2 sing N N 319 GLU CG HG3 sing N N 320 GLU CD OE1 doub N N 321 GLU CD OE2 sing N N 322 GLU OE2 HE2 sing N N 323 GLU OXT HXT sing N N 324 GLY N CA sing N N 325 GLY N H sing N N 326 GLY N H2 sing N N 327 GLY CA C sing N N 328 GLY CA HA2 sing N N 329 GLY CA HA3 sing N N 330 GLY C O doub N N 331 GLY C OXT sing N N 332 GLY OXT HXT sing N N 333 HIS N CA sing N N 334 HIS N H sing N N 335 HIS N H2 sing N N 336 HIS CA C sing N N 337 HIS CA CB sing N N 338 HIS CA HA sing N N 339 HIS C O doub N N 340 HIS C OXT sing N N 341 HIS CB CG sing N N 342 HIS CB HB2 sing N N 343 HIS CB HB3 sing N N 344 HIS CG ND1 sing Y N 345 HIS CG CD2 doub Y N 346 HIS ND1 CE1 doub Y N 347 HIS ND1 HD1 sing N N 348 HIS CD2 NE2 sing Y N 349 HIS CD2 HD2 sing N N 350 HIS CE1 NE2 sing Y N 351 HIS CE1 HE1 sing N N 352 HIS NE2 HE2 sing N N 353 HIS OXT HXT sing N N 354 HOH O H1 sing N N 355 HOH O H2 sing N N 356 ILE N CA sing N N 357 ILE N H sing N N 358 ILE N H2 sing N N 359 ILE CA C sing N N 360 ILE CA CB sing N N 361 ILE CA HA sing N N 362 ILE C O doub N N 363 ILE C OXT sing N N 364 ILE CB CG1 sing N N 365 ILE CB CG2 sing N N 366 ILE CB HB sing N N 367 ILE CG1 CD1 sing N N 368 ILE CG1 HG12 sing N N 369 ILE CG1 HG13 sing N N 370 ILE CG2 HG21 sing N N 371 ILE CG2 HG22 sing N N 372 ILE CG2 HG23 sing N N 373 ILE CD1 HD11 sing N N 374 ILE CD1 HD12 sing N N 375 ILE CD1 HD13 sing N N 376 ILE OXT HXT sing N N 377 LEU N CA sing N N 378 LEU N H sing N N 379 LEU N H2 sing N N 380 LEU CA C sing N N 381 LEU CA CB sing N N 382 LEU CA HA sing N N 383 LEU C O doub N N 384 LEU C OXT sing N N 385 LEU CB CG sing N N 386 LEU CB HB2 sing N N 387 LEU CB HB3 sing N N 388 LEU CG CD1 sing N N 389 LEU CG CD2 sing N N 390 LEU CG HG sing N N 391 LEU CD1 HD11 sing N N 392 LEU CD1 HD12 sing N N 393 LEU CD1 HD13 sing N N 394 LEU CD2 HD21 sing N N 395 LEU CD2 HD22 sing N N 396 LEU CD2 HD23 sing N N 397 LEU OXT HXT sing N N 398 LYS N CA sing N N 399 LYS N H sing N N 400 LYS N H2 sing N N 401 LYS CA C sing N N 402 LYS CA CB sing N N 403 LYS CA HA sing N N 404 LYS C O doub N N 405 LYS C OXT sing N N 406 LYS CB CG sing N N 407 LYS CB HB2 sing N N 408 LYS CB HB3 sing N N 409 LYS CG CD sing N N 410 LYS CG HG2 sing N N 411 LYS CG HG3 sing N N 412 LYS CD CE sing N N 413 LYS CD HD2 sing N N 414 LYS CD HD3 sing N N 415 LYS CE NZ sing N N 416 LYS CE HE2 sing N N 417 LYS CE HE3 sing N N 418 LYS NZ HZ1 sing N N 419 LYS NZ HZ2 sing N N 420 LYS NZ HZ3 sing N N 421 LYS OXT HXT sing N N 422 MET N CA sing N N 423 MET N H sing N N 424 MET N H2 sing N N 425 MET CA C sing N N 426 MET CA CB sing N N 427 MET CA HA sing N N 428 MET C O doub N N 429 MET C OXT sing N N 430 MET CB CG sing N N 431 MET CB HB2 sing N N 432 MET CB HB3 sing N N 433 MET CG SD sing N N 434 MET CG HG2 sing N N 435 MET CG HG3 sing N N 436 MET SD CE sing N N 437 MET CE HE1 sing N N 438 MET CE HE2 sing N N 439 MET CE HE3 sing N N 440 MET OXT HXT sing N N 441 PHE N CA sing N N 442 PHE N H sing N N 443 PHE N H2 sing N N 444 PHE CA C sing N N 445 PHE CA CB sing N N 446 PHE CA HA sing N N 447 PHE C O doub N N 448 PHE C OXT sing N N 449 PHE CB CG sing N N 450 PHE CB HB2 sing N N 451 PHE CB HB3 sing N N 452 PHE CG CD1 doub Y N 453 PHE CG CD2 sing Y N 454 PHE CD1 CE1 sing Y N 455 PHE CD1 HD1 sing N N 456 PHE CD2 CE2 doub Y N 457 PHE CD2 HD2 sing N N 458 PHE CE1 CZ doub Y N 459 PHE CE1 HE1 sing N N 460 PHE CE2 CZ sing Y N 461 PHE CE2 HE2 sing N N 462 PHE CZ HZ sing N N 463 PHE OXT HXT sing N N 464 PRO N CA sing N N 465 PRO N CD sing N N 466 PRO N H sing N N 467 PRO CA C sing N N 468 PRO CA CB sing N N 469 PRO CA HA sing N N 470 PRO C O doub N N 471 PRO C OXT sing N N 472 PRO CB CG sing N N 473 PRO CB HB2 sing N N 474 PRO CB HB3 sing N N 475 PRO CG CD sing N N 476 PRO CG HG2 sing N N 477 PRO CG HG3 sing N N 478 PRO CD HD2 sing N N 479 PRO CD HD3 sing N N 480 PRO OXT HXT sing N N 481 SER N CA sing N N 482 SER N H sing N N 483 SER N H2 sing N N 484 SER CA C sing N N 485 SER CA CB sing N N 486 SER CA HA sing N N 487 SER C O doub N N 488 SER C OXT sing N N 489 SER CB OG sing N N 490 SER CB HB2 sing N N 491 SER CB HB3 sing N N 492 SER OG HG sing N N 493 SER OXT HXT sing N N 494 THR N CA sing N N 495 THR N H sing N N 496 THR N H2 sing N N 497 THR CA C sing N N 498 THR CA CB sing N N 499 THR CA HA sing N N 500 THR C O doub N N 501 THR C OXT sing N N 502 THR CB OG1 sing N N 503 THR CB CG2 sing N N 504 THR CB HB sing N N 505 THR OG1 HG1 sing N N 506 THR CG2 HG21 sing N N 507 THR CG2 HG22 sing N N 508 THR CG2 HG23 sing N N 509 THR OXT HXT sing N N 510 TRP N CA sing N N 511 TRP N H sing N N 512 TRP N H2 sing N N 513 TRP CA C sing N N 514 TRP CA CB sing N N 515 TRP CA HA sing N N 516 TRP C O doub N N 517 TRP C OXT sing N N 518 TRP CB CG sing N N 519 TRP CB HB2 sing N N 520 TRP CB HB3 sing N N 521 TRP CG CD1 doub Y N 522 TRP CG CD2 sing Y N 523 TRP CD1 NE1 sing Y N 524 TRP CD1 HD1 sing N N 525 TRP CD2 CE2 doub Y N 526 TRP CD2 CE3 sing Y N 527 TRP NE1 CE2 sing Y N 528 TRP NE1 HE1 sing N N 529 TRP CE2 CZ2 sing Y N 530 TRP CE3 CZ3 doub Y N 531 TRP CE3 HE3 sing N N 532 TRP CZ2 CH2 doub Y N 533 TRP CZ2 HZ2 sing N N 534 TRP CZ3 CH2 sing Y N 535 TRP CZ3 HZ3 sing N N 536 TRP CH2 HH2 sing N N 537 TRP OXT HXT sing N N 538 TYR N CA sing N N 539 TYR N H sing N N 540 TYR N H2 sing N N 541 TYR CA C sing N N 542 TYR CA CB sing N N 543 TYR CA HA sing N N 544 TYR C O doub N N 545 TYR C OXT sing N N 546 TYR CB CG sing N N 547 TYR CB HB2 sing N N 548 TYR CB HB3 sing N N 549 TYR CG CD1 doub Y N 550 TYR CG CD2 sing Y N 551 TYR CD1 CE1 sing Y N 552 TYR CD1 HD1 sing N N 553 TYR CD2 CE2 doub Y N 554 TYR CD2 HD2 sing N N 555 TYR CE1 CZ doub Y N 556 TYR CE1 HE1 sing N N 557 TYR CE2 CZ sing Y N 558 TYR CE2 HE2 sing N N 559 TYR CZ OH sing N N 560 TYR OH HH sing N N 561 TYR OXT HXT sing N N 562 VAL N CA sing N N 563 VAL N H sing N N 564 VAL N H2 sing N N 565 VAL CA C sing N N 566 VAL CA CB sing N N 567 VAL CA HA sing N N 568 VAL C O doub N N 569 VAL C OXT sing N N 570 VAL CB CG1 sing N N 571 VAL CB CG2 sing N N 572 VAL CB HB sing N N 573 VAL CG1 HG11 sing N N 574 VAL CG1 HG12 sing N N 575 VAL CG1 HG13 sing N N 576 VAL CG2 HG21 sing N N 577 VAL CG2 HG22 sing N N 578 VAL CG2 HG23 sing N N 579 VAL OXT HXT sing N N 580 XL3 CA CB sing N N 581 XL3 CA HA sing N N 582 XL3 CA HAA sing N N 583 XL3 CA HAB sing N N 584 XL3 CC CB sing N N 585 XL3 CB HB sing N N 586 XL3 CB HBA sing N N 587 XL3 SG CC sing N N 588 XL3 CC HC sing N N 589 XL3 CC HCA sing N N 590 XL3 SG HSG sing N N 591 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3RZK 'double helix' 3RZK 'b-form double helix' 3RZK 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DT 2 1_555 C DA 13 1_555 -0.087 -0.193 0.317 -10.967 -13.397 -6.872 1 B_DT260:DA284_C B 260 ? C 284 ? 20 1 1 B DG 3 1_555 C DC 12 1_555 -0.437 -0.192 -0.003 -6.109 -9.214 -5.056 2 B_DG261:DC283_C B 261 ? C 283 ? 19 1 1 B DT 4 1_555 C DA 11 1_555 -0.355 -0.165 0.234 -0.064 -7.413 -2.185 3 B_DT262:DA282_C B 262 ? C 282 ? 20 1 1 B DC 5 1_555 C DG 10 1_555 0.057 -0.404 -0.263 2.718 -3.853 -0.584 4 B_DC263:DG281_C B 263 ? C 281 ? 19 1 1 B DT 6 1_555 C DT 8 1_555 -2.064 -1.706 -0.001 26.992 -4.400 7.726 5 B_DT264:DT279_C B 264 ? C 279 ? 16 1 1 B DA 8 1_555 C DT 7 1_555 0.124 -0.174 -0.005 -21.391 4.872 7.021 6 B_DA266:DT278_C B 266 ? C 278 ? 20 1 1 B DC 9 1_555 C DG 6 1_555 0.139 -0.117 0.390 -8.486 -12.399 1.042 7 B_DC267:DG277_C B 267 ? C 277 ? 19 1 1 B DT 10 1_555 C DA 5 1_555 0.107 -0.169 0.108 1.363 -13.660 -6.597 8 B_DT268:DA276_C B 268 ? C 276 ? 20 1 1 B DG 11 1_555 C DC 4 1_555 0.270 -0.319 0.124 -1.016 -14.650 -3.743 9 B_DG269:DC275_C B 269 ? C 275 ? 19 1 1 B DC 12 1_555 C DG 3 1_555 -0.220 -0.287 0.462 -18.066 -6.824 -2.761 10 B_DC270:DG274_C B 270 ? C 274 ? 19 1 1 B DG 13 1_555 C DC 2 1_555 0.013 -0.242 0.367 5.510 0.396 -3.722 11 B_DG271:DC273_C B 271 ? C 273 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DT 2 1_555 C DA 13 1_555 B DG 3 1_555 C DC 12 1_555 0.540 -0.008 3.276 1.905 7.907 30.834 -1.467 -0.634 3.202 14.555 -3.507 31.863 1 BB_DT260DG261:DC283DA284_CC B 260 ? C 284 ? B 261 ? C 283 ? 1 B DG 3 1_555 C DC 12 1_555 B DT 4 1_555 C DA 11 1_555 -0.380 -0.465 3.214 -2.830 -2.233 30.838 -0.444 0.171 3.260 -4.182 5.299 31.043 2 BB_DG261DT262:DA282DC283_CC B 261 ? C 283 ? B 262 ? C 282 ? 1 B DT 4 1_555 C DA 11 1_555 B DC 5 1_555 C DG 10 1_555 0.990 -0.402 3.240 3.160 0.497 38.493 -0.669 -1.107 3.303 0.753 -4.782 38.620 3 BB_DT262DC263:DG281DA282_CC B 262 ? C 282 ? B 263 ? C 281 ? 1 B DC 5 1_555 C DG 10 1_555 B DT 6 1_555 C DT 8 1_555 0.730 -0.317 2.598 -3.810 10.370 22.274 -3.107 -2.568 2.093 24.965 9.171 24.832 4 BB_DC263DT264:DT279DG281_CC B 263 ? C 281 ? B 264 ? C 279 ? 1 B DA 8 1_555 C DT 7 1_555 B DC 9 1_555 C DG 6 1_555 -1.560 -0.906 3.247 4.360 -11.166 24.542 0.908 4.414 3.047 -24.488 -9.563 27.273 5 BB_DA266DC267:DG277DT278_CC B 266 ? C 278 ? B 267 ? C 277 ? 1 B DC 9 1_555 C DG 6 1_555 B DT 10 1_555 C DA 5 1_555 -0.798 -0.014 3.172 3.751 9.446 28.516 -1.857 2.255 2.894 18.452 -7.328 30.238 6 BB_DC267DT268:DA276DG277_CC B 267 ? C 277 ? B 268 ? C 276 ? 1 B DT 10 1_555 C DA 5 1_555 B DG 11 1_555 C DC 4 1_555 0.573 0.007 3.496 2.376 4.948 35.989 -0.729 -0.563 3.496 7.951 -3.818 36.392 7 BB_DT268DG269:DC275DA276_CC B 268 ? C 276 ? B 269 ? C 275 ? 1 B DG 11 1_555 C DC 4 1_555 B DC 12 1_555 C DG 3 1_555 1.369 -0.494 3.669 1.199 -5.018 32.112 0.118 -2.206 3.749 -8.998 -2.151 32.513 8 BB_DG269DC270:DG274DC275_CC B 269 ? C 275 ? B 270 ? C 274 ? 1 B DC 12 1_555 C DG 3 1_555 B DG 13 1_555 C DC 2 1_555 -0.662 -0.043 2.811 -0.401 5.261 33.065 -0.821 1.093 2.779 9.171 0.700 33.472 9 BB_DC270DG271:DC273DG274_CC B 270 ? C 274 ? B 271 ? C 273 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MANGANESE (II) ION' MN 5 '2-OXOGLUTARIC ACID' AKG 6 propane-1-thiol XL3 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3BTX _pdbx_initial_refinement_model.details ? #