HEADER OXIDOREDUCTASE 12-MAY-11 3RZZ TITLE STRUCTURE OF HYDROXYETHYLPHOSHPHONATE DIOXYGENASE Y98F MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROXYETHYLPHOSHPHONATE DIOXYGENASE (PHPD); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES VIRIDOCHROMOGENES; SOURCE 3 ORGANISM_TAXID: 1938; SOURCE 4 STRAIN: 1938; SOURCE 5 GENE: PHPD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS NON HEME FE(II) DIOXYGENASE, CUPIN, BIOSYNTHETIC PROTEIN, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.A.COOKE REVDAT 3 13-SEP-23 3RZZ 1 REMARK SEQADV LINK REVDAT 2 23-MAY-12 3RZZ 1 JRNL REVDAT 1 20-JUL-11 3RZZ 0 JRNL AUTH S.C.PECK,H.A.COOKE,R.M.CICCHILLO,P.MALOVA,F.HAMMERSCHMIDT, JRNL AUTH 2 S.K.NAIR,W.A.VAN DER DONK JRNL TITL MECHANISM AND SUBSTRATE RECOGNITION OF JRNL TITL 2 2-HYDROXYETHYLPHOSPHONATE DIOXYGENASE. JRNL REF BIOCHEMISTRY V. 50 6598 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21711001 JRNL DOI 10.1021/BI200804R REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.7 REMARK 3 NUMBER OF REFLECTIONS : 17873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1757 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 198 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.022 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3229 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -17.10000 REMARK 3 B22 (A**2) : 22.47000 REMARK 3 B33 (A**2) : -5.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.26 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.29 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.260 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.033 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 1.872 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.700 ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3RZZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065587. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18990 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.9 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 28.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.27700 REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3G7D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M SODIUM ACETATE, 0.1 M HEPES, 0.05 REMARK 280 M CADMIUM SULFATE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.69800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.69800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.37350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.48200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.37350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.48200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.69800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.37350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.48200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.69800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.37350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.48200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -246.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -50.69800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 501 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 666 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 ASP A 39 REMARK 465 GLU A 40 REMARK 465 ALA A 41 REMARK 465 ASN A 42 REMARK 465 GLU A 43 REMARK 465 PRO A 44 REMARK 465 ASP A 45 REMARK 465 ALA A 343 REMARK 465 ASP A 344 REMARK 465 GLY A 345 REMARK 465 ARG A 346 REMARK 465 GLY A 347 REMARK 465 ALA A 348 REMARK 465 ASP A 435 REMARK 465 LEU A 436 REMARK 465 ALA A 437 REMARK 465 GLY A 438 REMARK 465 TRP A 439 REMARK 465 GLY A 440 REMARK 465 TYR A 441 REMARK 465 ASP A 442 REMARK 465 ASN A 443 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 297 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 16 57.25 39.96 REMARK 500 ALA A 103 143.64 -171.41 REMARK 500 TYR A 179 -11.80 70.26 REMARK 500 ASP A 295 174.53 -54.70 REMARK 500 ASP A 298 -7.51 84.97 REMARK 500 ILE A 351 102.25 -166.10 REMARK 500 PRO A 382 130.47 -37.89 REMARK 500 ASP A 383 -3.74 84.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 456 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 32 OD1 REMARK 620 2 ASP A 32 OD2 50.7 REMARK 620 3 HOH A 565 O 83.1 84.5 REMARK 620 4 HOH A 681 O 83.4 85.4 166.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 452 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 66 OD2 REMARK 620 2 ASP A 66 OD1 52.1 REMARK 620 3 HOH A 561 O 69.0 115.6 REMARK 620 4 HOH A 640 O 91.8 91.0 116.4 REMARK 620 5 HOH A 695 O 141.1 89.3 138.4 94.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 454 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 94 ND1 REMARK 620 2 HOH A 688 O 91.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 444 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 129 NE2 REMARK 620 2 GLU A 176 OE1 91.4 REMARK 620 3 HIS A 182 NE2 94.9 74.9 REMARK 620 4 HOH A 563 O 165.9 89.8 99.0 REMARK 620 5 HOH A 574 O 89.4 86.9 161.3 76.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 445 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 131 OE1 REMARK 620 2 GLU A 131 OE2 49.3 REMARK 620 3 HOH A 579 O 107.6 139.4 REMARK 620 4 HOH A 637 O 120.6 83.5 84.4 REMARK 620 5 HOH A 638 O 79.6 105.5 100.6 156.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 446 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 142 OD2 REMARK 620 2 ASP A 142 OD1 50.0 REMARK 620 3 HIS A 160 ND1 98.2 89.4 REMARK 620 4 HIS A 163 NE2 85.9 73.7 154.2 REMARK 620 5 HOH A 558 O 78.8 128.2 91.5 114.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 449 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 180 SG REMARK 620 2 HOH A 577 O 76.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 448 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 296 OE1 REMARK 620 2 HIS A 330 ND1 105.5 REMARK 620 3 HOH A 567 O 69.0 75.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 447 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 568 O REMARK 620 2 HOH A 586 O 88.0 REMARK 620 3 HOH A 617 O 169.2 81.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 444 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 445 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 446 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 447 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 448 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 449 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 452 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 453 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 454 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 455 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 456 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 457 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 458 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GBF RELATED DB: PDB REMARK 900 PHPD WITH CADMIUM COMPLEXED WITH HYDROETHYLPHOSPHONATE (HEP) REMARK 900 RELATED ID: 3G7D RELATED DB: PDB REMARK 900 NATIVE PHPD WITH CADMIUM ATOMS DBREF 3RZZ A 1 443 UNP Q5IW40 Q5IW40_STRVR 1 443 SEQADV 3RZZ GLY A -2 UNP Q5IW40 EXPRESSION TAG SEQADV 3RZZ SER A -1 UNP Q5IW40 EXPRESSION TAG SEQADV 3RZZ HIS A 0 UNP Q5IW40 EXPRESSION TAG SEQADV 3RZZ PHE A 98 UNP Q5IW40 TYR 98 ENGINEERED MUTATION SEQRES 1 A 446 GLY SER HIS MET ARG ILE ASP PRO PHE LYS LEU ALA HIS SEQRES 2 A 446 TRP MET ASN ALA ARG LYS TYR THR ALA ALA GLN THR ALA SEQRES 3 A 446 ASP LEU ALA GLY LEU PRO LEU ASP ASP LEU ARG ARG LEU SEQRES 4 A 446 LEU GLY ASP GLU ALA ASN GLU PRO ASP PRO ALA ALA ALA SEQRES 5 A 446 THR ALA LEU ALA GLU ALA LEU SER VAL GLU PRO SER GLN SEQRES 6 A 446 LEU ALA ALA ASP ALA HIS ARG ASN LEU THR VAL VAL HIS SEQRES 7 A 446 LYS SER ALA GLU GLU MET HIS ALA SER ARG ARG PRO ILE SEQRES 8 A 446 GLN ARG ASP GLY ILE HIS PHE TYR ASN PHE TYR THR LEU SEQRES 9 A 446 ALA ALA PRO GLU GLY ARG VAL ALA PRO VAL VAL LEU ASP SEQRES 10 A 446 ILE LEU CYS PRO SER ASP ARG LEU PRO ALA LEU ASN ASN SEQRES 11 A 446 GLY HIS LEU GLU PRO ALA ILE THR VAL ASN LEU GLY PRO SEQRES 12 A 446 GLY ASP ILE ASN GLY ARG TRP GLY GLU GLU ILE THR PRO SEQRES 13 A 446 GLN THR TRP ARG VAL LEU HIS ALA ASN HIS GLY GLY ASP SEQRES 14 A 446 ARG TRP ILE THR GLY ASP SER TYR VAL GLU PRO SER TYR SEQRES 15 A 446 CYS PRO HIS SER TYR SER LEU ALA GLY ASP ALA PRO ALA SEQRES 16 A 446 ARG ILE VAL SER TYR THR ALA GLN SER ASN ILE SER PRO SEQRES 17 A 446 LEU MET THR GLU ALA ASN ASN TRP SER THR GLY ALA PHE SEQRES 18 A 446 GLU GLU ALA LEU LYS ALA LEU SER GLY LYS VAL SER ALA SEQRES 19 A 446 GLY SER VAL LEU ASP LEU PHE LEU ALA ARG ARG ALA HIS SEQRES 20 A 446 THR ARG THR SER ALA ALA GLU ALA ALA GLY VAL PRO PRO SEQRES 21 A 446 ALA ASP LEU GLU ALA ALA LEU ARG SER PRO ALA SER GLU SEQRES 22 A 446 THR GLY LEU THR VAL LEU ARG THR LEU GLY ARG ALA LEU SEQRES 23 A 446 GLY PHE ASP TYR ARG VAL LEU LEU PRO ALA ASP ASP GLN SEQRES 24 A 446 HIS ASP GLY VAL GLY LYS THR TRP THR THR ILE GLU ASP SEQRES 25 A 446 SER ARG ARG SER ARG ARG THR PHE GLY THR TYR GLU ALA SEQRES 26 A 446 ALA SER MET ALA SER ALA ALA HIS LEU PRO ASP LEU VAL SEQRES 27 A 446 GLY SER PHE LEU ARG VAL ASP ALA ASP GLY ARG GLY ALA SEQRES 28 A 446 ASP LEU ILE ASP HIS ALA GLU ASN HIS TYR VAL VAL THR SEQRES 29 A 446 GLU GLY ARG LEU THR LEU GLU TRP ASP GLY PRO ASP GLY SEQRES 30 A 446 PRO ALA SER VAL GLU LEU GLU PRO ASP GLY SER ALA TRP SEQRES 31 A 446 THR GLY PRO PHE VAL ARG HIS ARG TRP HIS GLY THR GLY SEQRES 32 A 446 THR VAL LEU LYS PHE GLY SER GLY ALA HIS LEU GLY TYR SEQRES 33 A 446 GLN ASP TRP LEU GLU LEU THR ASN THR PHE GLU PRO ALA SEQRES 34 A 446 ALA THR LEU ARG ARG GLY ARG ARG ASP LEU ALA GLY TRP SEQRES 35 A 446 GLY TYR ASP ASN HET CD A 444 1 HET CD A 445 1 HET CD A 446 1 HET CD A 447 1 HET CD A 448 1 HET CD A 449 1 HET CD A 450 1 HET CD A 451 1 HET CD A 452 1 HET CD A 453 1 HET CD A 454 1 HET CD A 455 1 HET CD A 456 1 HET CD A 457 1 HET CD A 458 1 HETNAM CD CADMIUM ION FORMUL 2 CD 15(CD 2+) FORMUL 17 HOH *270(H2 O) HELIX 1 1 ASP A 4 ARG A 15 1 12 HELIX 2 2 THR A 18 GLY A 27 1 10 HELIX 3 3 PRO A 29 LEU A 37 1 9 HELIX 4 4 PRO A 46 LEU A 56 1 11 HELIX 5 5 GLU A 59 LEU A 63 5 5 HELIX 6 6 SER A 77 SER A 84 1 8 HELIX 7 7 ILE A 203 ASN A 211 1 9 HELIX 8 8 SER A 214 SER A 226 1 13 HELIX 9 9 SER A 230 ARG A 242 1 13 HELIX 10 10 THR A 245 GLY A 254 1 10 HELIX 11 11 PRO A 256 SER A 266 1 11 HELIX 12 12 SER A 269 GLY A 284 1 16 HELIX 13 13 ASP A 286 LEU A 291 5 6 HELIX 14 14 THR A 306 SER A 313 1 8 HELIX 15 15 GLY A 412 THR A 420 1 9 HELIX 16 16 GLU A 424 ARG A 434 1 11 SHEET 1 A 7 VAL A 73 LYS A 76 0 SHEET 2 A 7 SER A 385 THR A 388 -1 O SER A 385 N LYS A 76 SHEET 3 A 7 GLU A 355 GLU A 362 -1 N TYR A 358 O ALA A 386 SHEET 4 A 7 GLY A 400 SER A 407 -1 O LEU A 403 N VAL A 359 SHEET 5 A 7 VAL A 335 VAL A 341 -1 N SER A 337 O LYS A 404 SHEET 6 A 7 TYR A 320 SER A 324 -1 N ALA A 323 O PHE A 338 SHEET 7 A 7 ARG A 315 PHE A 317 -1 N ARG A 315 O ALA A 322 SHEET 1 B 6 ARG A 86 ARG A 90 0 SHEET 2 B 6 ILE A 93 THR A 100 -1 O PHE A 98 N ARG A 86 SHEET 3 B 6 VAL A 111 ILE A 115 -1 O VAL A 112 N TYR A 99 SHEET 4 B 6 ALA A 192 THR A 198 -1 O ILE A 194 N LEU A 113 SHEET 5 B 6 ALA A 133 PRO A 140 -1 N ILE A 134 O TYR A 197 SHEET 6 B 6 SER A 173 GLU A 176 -1 O GLU A 176 N ALA A 133 SHEET 1 C 3 TRP A 156 LEU A 159 0 SHEET 2 C 3 ILE A 143 ARG A 146 -1 N ILE A 143 O LEU A 159 SHEET 3 C 3 SER A 183 LEU A 186 -1 O SER A 185 N ASN A 144 SHEET 1 D 3 GLY A 374 LEU A 380 0 SHEET 2 D 3 LEU A 365 GLY A 371 -1 N LEU A 365 O LEU A 380 SHEET 3 D 3 HIS A 394 HIS A 397 -1 O HIS A 397 N THR A 366 LINK OD1 ASP A 32 CD CD A 456 1555 1555 2.58 LINK OD2 ASP A 32 CD CD A 456 1555 1555 2.58 LINK OD2 ASP A 66 CD CD A 452 1555 1555 2.46 LINK OD1 ASP A 66 CD CD A 452 1555 1555 2.53 LINK OE2 GLU A 80 CD CD A 451 1555 1555 2.66 LINK ND1 HIS A 94 CD CD A 454 1555 1555 2.53 LINK NE2 HIS A 129 CD CD A 444 1555 1555 2.50 LINK OE1 GLU A 131 CD CD A 445 1555 1555 2.57 LINK OE2 GLU A 131 CD CD A 445 1555 1555 2.70 LINK OD2 ASP A 142 CD CD A 446 1555 1555 2.54 LINK OD1 ASP A 142 CD CD A 446 1555 1555 2.66 LINK ND1 HIS A 160 CD CD A 446 1555 1555 2.44 LINK NE2 HIS A 163 CD CD A 446 1555 1555 2.58 LINK OE1 GLU A 176 CD CD A 444 1555 1555 2.57 LINK SG CYS A 180 CD CD A 449 1555 1555 2.40 LINK SG CYS A 180 CD CD A 457 1555 1555 2.26 LINK NE2 HIS A 182 CD CD A 444 1555 1555 2.46 LINK OD2 ASP A 189 CD CD A 458 1555 1555 2.70 LINK OE1 GLN A 296 CD CD A 448 1555 1555 2.20 LINK ND1 HIS A 330 CD CD A 448 1555 1555 2.26 LINK NE2 HIS A 410 CD CD A 455 1555 1555 2.22 LINK CD CD A 444 O HOH A 563 1555 1555 2.49 LINK CD CD A 444 O HOH A 574 1555 1555 2.55 LINK CD CD A 445 O HOH A 579 1555 1555 2.58 LINK CD CD A 445 O HOH A 637 1555 1555 2.49 LINK CD CD A 445 O HOH A 638 1555 1555 2.56 LINK CD CD A 446 O HOH A 558 1555 1555 2.49 LINK CD CD A 447 O HOH A 568 1555 1555 2.50 LINK CD CD A 447 O HOH A 586 1555 1555 2.30 LINK CD CD A 447 O HOH A 617 1555 1555 2.44 LINK CD CD A 448 O HOH A 567 1555 1555 2.56 LINK CD CD A 449 O HOH A 577 1555 1555 2.62 LINK CD CD A 452 O HOH A 561 1555 1555 2.52 LINK CD CD A 452 O HOH A 640 1555 1555 2.55 LINK CD CD A 452 O HOH A 695 1555 1555 2.26 LINK CD CD A 453 O HOH A 687 1555 1555 2.68 LINK CD CD A 454 O HOH A 688 1555 1555 2.61 LINK CD CD A 456 O HOH A 565 1555 1555 2.61 LINK CD CD A 456 O HOH A 681 1555 1555 2.52 CISPEP 1 GLY A 139 PRO A 140 0 0.17 CISPEP 2 HIS A 410 LEU A 411 0 0.11 SITE 1 AC1 6 HIS A 129 GLU A 176 HIS A 182 HOH A 555 SITE 2 AC1 6 HOH A 563 HOH A 574 SITE 1 AC2 5 HIS A 10 GLU A 131 HOH A 579 HOH A 637 SITE 2 AC2 5 HOH A 638 SITE 1 AC3 6 ASP A 142 HIS A 160 HIS A 163 HOH A 517 SITE 2 AC3 6 HOH A 558 HOH A 639 SITE 1 AC4 6 HIS A 82 HOH A 470 HOH A 568 HOH A 586 SITE 2 AC4 6 HOH A 617 HOH A 678 SITE 1 AC5 5 GLN A 296 LYS A 302 HIS A 330 HOH A 567 SITE 2 AC5 5 HOH A 679 SITE 1 AC6 5 CYS A 180 ASP A 298 HOH A 577 HOH A 580 SITE 2 AC6 5 HOH A 629 SITE 1 AC7 3 ARG A 340 ASP A 342 HOH A 698 SITE 1 AC8 3 GLU A 80 HOH A 578 HOH A 644 SITE 1 AC9 4 ASP A 66 HOH A 561 HOH A 640 HOH A 695 SITE 1 BC1 3 HIS A 75 HOH A 536 HOH A 687 SITE 1 BC2 4 HIS A 94 ARG A 265 HOH A 684 HOH A 688 SITE 1 BC3 4 GLU A 209 HIS A 410 HOH A 616 HOH A 669 SITE 1 BC4 4 ASP A 32 ASP A 309 HOH A 565 HOH A 681 SITE 1 BC5 2 CYS A 180 HOH A 593 SITE 1 BC6 5 ASP A 189 GLU A 368 HIS A 397 HOH A 582 SITE 2 BC6 5 HOH A 653 CRYST1 84.747 94.964 101.396 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011800 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010530 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009862 0.00000