HEADER MOTOR PROTEIN 12-MAY-11 3S02 TITLE THE CRYSTAL STRUCTURE OF THE PERIPLASMIC DOMAIN OF HELICOBACTER PYLORI TITLE 2 MOTB (RESIDUES 103-256) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOTILITY PROTEIN B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN (UNP RESIDUES 104-257); COMPND 5 SYNONYM: CHEMOTAXIS PROTEIN MOTB; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 85962; SOURCE 4 STRAIN: 26695; SOURCE 5 GENE: HP_0816, MOTB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET151-D-TOPO KEYWDS PEPTIDOGLYCAN BINDING, FLAGELLAR ROTATION, CHEMOTAXIS, BACTERIAL KEYWDS 2 FLAGELLAR MOTOR, MEMBRANE, MOTOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.R.ROUJEINIKOVA REVDAT 2 28-FEB-24 3S02 1 REMARK REVDAT 1 14-MAR-12 3S02 0 JRNL AUTH J.O'NEILL,M.XIE,M.HIJNEN,A.ROUJEINIKOVA JRNL TITL ROLE OF THE MOTB LINKER IN THE ASSEMBLY AND ACTIVATION OF JRNL TITL 2 THE BACTERIAL FLAGELLAR MOTOR. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 67 1009 2011 JRNL REFN ISSN 0907-4449 JRNL PMID 22120737 JRNL DOI 10.1107/S0907444911041102 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.O'NEILL,A.ROUJEINIKOVA REMARK 1 TITL CLONING, PURIFICATION AND CRYSTALLIZATION OF MOTB, A STATOR REMARK 1 TITL 2 COMPONENT OF THE PROTON-DRIVEN BACTERIAL FLAGELLAR MOTOR. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 64 561 2008 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 18540076 REMARK 1 DOI 10.1107/S1744309108012219 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 851 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1118 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2358 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 153 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.74000 REMARK 3 B22 (A**2) : 0.74000 REMARK 3 B33 (A**2) : -1.11000 REMARK 3 B12 (A**2) : 0.37000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.305 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.245 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.099 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2428 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3289 ; 1.505 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 297 ; 6.588 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;36.666 ;24.919 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 440 ;18.452 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;22.451 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 370 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1852 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1487 ; 0.826 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2427 ; 1.677 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 941 ; 2.584 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 862 ; 4.492 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 107 A 251 REMARK 3 ORIGIN FOR THE GROUP (A): 42.4920 -19.7130 5.5730 REMARK 3 T TENSOR REMARK 3 T11: 0.0351 T22: 0.0491 REMARK 3 T33: 0.0296 T12: -0.0035 REMARK 3 T13: -0.0006 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.5208 L22: 0.0884 REMARK 3 L33: 0.3976 L12: -0.1171 REMARK 3 L13: -0.2341 L23: -0.0805 REMARK 3 S TENSOR REMARK 3 S11: 0.0224 S12: 0.0008 S13: -0.0217 REMARK 3 S21: -0.0001 S22: 0.0055 S23: 0.0220 REMARK 3 S31: -0.0282 S32: -0.0330 S33: -0.0279 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 107 B 252 REMARK 3 ORIGIN FOR THE GROUP (A): 43.6140 -20.5880 -9.1440 REMARK 3 T TENSOR REMARK 3 T11: 0.0252 T22: 0.0357 REMARK 3 T33: 0.0279 T12: -0.0055 REMARK 3 T13: 0.0127 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.5467 L22: 0.1944 REMARK 3 L33: 0.6737 L12: -0.2365 REMARK 3 L13: 0.4372 L23: -0.1643 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: 0.0132 S13: -0.0431 REMARK 3 S21: -0.0106 S22: 0.0096 S23: 0.0314 REMARK 3 S31: -0.0261 S32: -0.0619 S33: -0.0077 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3S02 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065590. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.004 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16761 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 65.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH 6.5, 6% PEG 20K, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.93700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.87400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 93.87400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.93700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 113.70450 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 -65.64732 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 103 REMARK 465 GLU A 104 REMARK 465 GLY A 105 REMARK 465 HIS A 252 REMARK 465 LYS A 253 REMARK 465 GLN A 254 REMARK 465 GLN A 255 REMARK 465 GLU A 256 REMARK 465 GLY B 103 REMARK 465 GLU B 104 REMARK 465 GLY B 105 REMARK 465 LYS B 253 REMARK 465 GLN B 254 REMARK 465 GLN B 255 REMARK 465 GLU B 256 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 183 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 183 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 226 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 164 -173.85 -69.21 REMARK 500 LYS A 170 68.19 33.70 REMARK 500 ASP A 234 37.60 -97.29 REMARK 500 ALA A 235 134.97 -36.76 REMARK 500 ASP B 164 -169.79 -67.65 REMARK 500 VAL B 169 -87.09 -123.27 REMARK 500 ASP B 216 17.92 -150.32 REMARK 500 ALA B 235 129.26 -38.43 REMARK 500 ASN B 250 49.61 -141.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3S03 RELATED DB: PDB REMARK 900 RELATED ID: 3S06 RELATED DB: PDB REMARK 900 RELATED ID: 3S0H RELATED DB: PDB REMARK 900 RELATED ID: 3S0W RELATED DB: PDB REMARK 900 RELATED ID: 3S0Y RELATED DB: PDB DBREF 3S02 A 103 256 UNP P56427 MOTB_HELPY 104 257 DBREF 3S02 B 103 256 UNP P56427 MOTB_HELPY 104 257 SEQRES 1 A 154 GLY GLU GLY SER VAL LEU GLU GLN ILE ASP GLN GLY SER SEQRES 2 A 154 ILE LEU LYS LEU PRO SER ASN LEU LEU PHE GLU ASN ALA SEQRES 3 A 154 THR SER ASP ALA ILE ASN GLN ASP MET MET LEU TYR ILE SEQRES 4 A 154 GLU ARG ILE ALA LYS ILE ILE GLN LYS LEU PRO LYS ARG SEQRES 5 A 154 VAL HIS ILE ASN VAL ARG GLY PHE THR ASP ASP THR PRO SEQRES 6 A 154 LEU VAL LYS THR ARG PHE LYS SER HIS TYR GLU LEU ALA SEQRES 7 A 154 ALA ASN ARG ALA TYR ARG VAL MET LYS VAL LEU ILE GLN SEQRES 8 A 154 TYR GLY VAL ASN PRO ASN GLN LEU SER PHE SER SER TYR SEQRES 9 A 154 GLY SER THR ASN PRO ILE ALA PRO ASN ASP SER LEU GLU SEQRES 10 A 154 ASN ARG MET LYS ASN ASN ARG VAL GLU ILE PHE PHE SER SEQRES 11 A 154 THR ASP ALA ASN ASP LEU SER LYS ILE HIS SER ILE LEU SEQRES 12 A 154 ASP ASN GLU PHE ASN PRO HIS LYS GLN GLN GLU SEQRES 1 B 154 GLY GLU GLY SER VAL LEU GLU GLN ILE ASP GLN GLY SER SEQRES 2 B 154 ILE LEU LYS LEU PRO SER ASN LEU LEU PHE GLU ASN ALA SEQRES 3 B 154 THR SER ASP ALA ILE ASN GLN ASP MET MET LEU TYR ILE SEQRES 4 B 154 GLU ARG ILE ALA LYS ILE ILE GLN LYS LEU PRO LYS ARG SEQRES 5 B 154 VAL HIS ILE ASN VAL ARG GLY PHE THR ASP ASP THR PRO SEQRES 6 B 154 LEU VAL LYS THR ARG PHE LYS SER HIS TYR GLU LEU ALA SEQRES 7 B 154 ALA ASN ARG ALA TYR ARG VAL MET LYS VAL LEU ILE GLN SEQRES 8 B 154 TYR GLY VAL ASN PRO ASN GLN LEU SER PHE SER SER TYR SEQRES 9 B 154 GLY SER THR ASN PRO ILE ALA PRO ASN ASP SER LEU GLU SEQRES 10 B 154 ASN ARG MET LYS ASN ASN ARG VAL GLU ILE PHE PHE SER SEQRES 11 B 154 THR ASP ALA ASN ASP LEU SER LYS ILE HIS SER ILE LEU SEQRES 12 B 154 ASP ASN GLU PHE ASN PRO HIS LYS GLN GLN GLU FORMUL 3 HOH *153(H2 O) HELIX 1 1 SER A 121 PHE A 125 1 5 HELIX 2 2 ASN A 134 ASP A 136 5 3 HELIX 3 3 MET A 137 GLN A 149 1 13 HELIX 4 4 SER A 175 TYR A 194 1 20 HELIX 5 5 ASN A 197 ASN A 199 5 3 HELIX 6 6 SER A 217 ASN A 225 1 9 HELIX 7 7 ASN A 236 ASN A 250 1 15 HELIX 8 8 PRO B 120 PHE B 125 1 6 HELIX 9 9 ASN B 134 ASP B 136 5 3 HELIX 10 10 MET B 137 GLN B 149 1 13 HELIX 11 11 SER B 175 TYR B 194 1 20 HELIX 12 12 ASN B 197 ASN B 199 5 3 HELIX 13 13 SER B 217 ASN B 225 1 9 HELIX 14 14 ASN B 236 ASN B 250 1 15 SHEET 1 A10 LEU A 108 ILE A 111 0 SHEET 2 A10 GLY A 114 PRO A 120 -1 O ILE A 116 N GLU A 109 SHEET 3 A10 ARG A 226 THR A 233 -1 O VAL A 227 N LEU A 119 SHEET 4 A10 VAL A 155 PHE A 162 -1 N ARG A 160 O GLU A 228 SHEET 5 A10 LEU A 201 GLY A 207 1 O SER A 202 N VAL A 159 SHEET 6 A10 LEU B 201 SER B 205 -1 O SER B 205 N PHE A 203 SHEET 7 A10 HIS B 156 PHE B 162 1 N VAL B 159 O SER B 204 SHEET 8 A10 ARG B 226 SER B 232 -1 O GLU B 228 N ARG B 160 SHEET 9 A10 GLY B 114 LYS B 118 -1 N LEU B 117 O ILE B 229 SHEET 10 A10 LEU B 108 ILE B 111 -1 N GLU B 109 O ILE B 116 CRYST1 75.803 75.803 140.811 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013192 0.007616 0.000000 0.00000 SCALE2 0.000000 0.015233 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007102 0.00000