HEADER TRANSPORT PROTEIN 13-MAY-11 3S0D TITLE APIS MELLIFERA OBP 14 IN COMPLEX WITH THE CITRUS ODORANT CITRALVA (3, TITLE 2 7-DIMETHYLOCTA-2,6-DIENENITRILE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: OBP14; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 18-135; COMPND 5 SYNONYM: ODORANT BINDING PROTEIN 14; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: APIS MELLIFERA; SOURCE 3 ORGANISM_COMMON: HONEYBEE; SOURCE 4 ORGANISM_TAXID: 7460; SOURCE 5 GENE: NP_001035313; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-5 B(+) KEYWDS ALL HELICAL PROTEIN, UNKNOWN ODORANT MOLECULES, ANTENNAE, TRANSPORT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.SPINELLI,A.LAGARDE,I.IOVINELLA,M.TEGONI,P.PELOSI,C.CAMBILLAU REVDAT 3 13-SEP-23 3S0D 1 REMARK SEQADV REVDAT 2 11-JAN-12 3S0D 1 JRNL REVDAT 1 30-NOV-11 3S0D 0 JRNL AUTH S.SPINELLI,A.LAGARDE,I.IOVINELLA,P.LEGRAND,M.TEGONI, JRNL AUTH 2 P.PELOSI,C.CAMBILLAU JRNL TITL CRYSTAL STRUCTURE OF APIS MELLIFERA OBP14, A C-MINUS JRNL TITL 2 ODORANT-BINDING PROTEIN, AND ITS COMPLEXES WITH ODORANT JRNL TITL 3 MOLECULES. JRNL REF INSECT BIOCHEM.MOL.BIOL. V. 42 41 2012 JRNL REFN ISSN 0965-1748 JRNL PMID 22075131 JRNL DOI 10.1016/J.IBMB.2011.10.005 REMARK 2 REMARK 2 RESOLUTION. 1.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 922 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.24 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2160 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.4720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 943 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.050 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.046 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.027 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.354 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1043 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 700 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1422 ; 1.527 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1773 ; 0.891 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 142 ; 5.219 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 44 ;39.366 ;27.955 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 227 ;11.180 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 1 ;11.358 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 173 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1128 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 161 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 639 ; 1.011 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 253 ; 0.319 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1063 ; 1.680 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 404 ; 2.714 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 346 ; 4.221 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1743 ; 0.995 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 10 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0530 3.4921 29.5034 REMARK 3 T TENSOR REMARK 3 T11: 0.0721 T22: 0.0175 REMARK 3 T33: 0.0160 T12: -0.0019 REMARK 3 T13: 0.0076 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: -0.3633 L22: 2.2329 REMARK 3 L33: 3.2013 L12: 1.2075 REMARK 3 L13: 0.8083 L23: 1.6269 REMARK 3 S TENSOR REMARK 3 S11: 0.0844 S12: 0.0104 S13: 0.0702 REMARK 3 S21: 0.3112 S22: -0.0874 S23: -0.0029 REMARK 3 S31: 0.2948 S32: -0.0245 S33: 0.0030 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 20 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2125 16.4627 24.5735 REMARK 3 T TENSOR REMARK 3 T11: 0.0312 T22: 0.0315 REMARK 3 T33: 0.0312 T12: 0.0027 REMARK 3 T13: 0.0025 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.1057 L22: 3.0743 REMARK 3 L33: 0.2906 L12: -0.4511 REMARK 3 L13: -0.1232 L23: -0.9317 REMARK 3 S TENSOR REMARK 3 S11: 0.0069 S12: 0.0114 S13: 0.0488 REMARK 3 S21: 0.0007 S22: -0.0227 S23: -0.0824 REMARK 3 S31: 0.0331 S32: 0.0524 S33: 0.0158 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 30 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0174 24.9886 31.5804 REMARK 3 T TENSOR REMARK 3 T11: 0.0136 T22: 0.0282 REMARK 3 T33: 0.0335 T12: 0.0017 REMARK 3 T13: 0.0010 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.4715 L22: 1.6243 REMARK 3 L33: 2.2521 L12: 0.4507 REMARK 3 L13: 0.0314 L23: -0.3488 REMARK 3 S TENSOR REMARK 3 S11: 0.0186 S12: -0.0118 S13: 0.0145 REMARK 3 S21: 0.0565 S22: -0.0565 S23: -0.1274 REMARK 3 S31: -0.0549 S32: 0.1074 S33: 0.0379 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 40 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5390 24.1056 35.9701 REMARK 3 T TENSOR REMARK 3 T11: 0.0395 T22: 0.0300 REMARK 3 T33: 0.0473 T12: 0.0076 REMARK 3 T13: -0.0054 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.7008 L22: 0.5306 REMARK 3 L33: 1.2756 L12: 0.0989 REMARK 3 L13: 0.8199 L23: -0.9202 REMARK 3 S TENSOR REMARK 3 S11: -0.0543 S12: -0.1412 S13: 0.1521 REMARK 3 S21: 0.1187 S22: 0.0177 S23: 0.0035 REMARK 3 S31: -0.0945 S32: -0.0386 S33: 0.0366 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): 10.6383 24.2408 26.0629 REMARK 3 T TENSOR REMARK 3 T11: 0.0298 T22: 0.0259 REMARK 3 T33: 0.0325 T12: -0.0025 REMARK 3 T13: 0.0000 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.2331 L22: 0.3969 REMARK 3 L33: 0.4850 L12: 0.0572 REMARK 3 L13: 0.2829 L23: 0.3901 REMARK 3 S TENSOR REMARK 3 S11: -0.0432 S12: 0.0459 S13: 0.0813 REMARK 3 S21: -0.0220 S22: 0.0497 S23: 0.0308 REMARK 3 S31: -0.0165 S32: 0.0145 S33: -0.0065 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4656 14.8254 21.2097 REMARK 3 T TENSOR REMARK 3 T11: 0.0327 T22: 0.0150 REMARK 3 T33: 0.0589 T12: -0.0106 REMARK 3 T13: -0.0127 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 3.5481 L22: -0.2779 REMARK 3 L33: 1.3161 L12: -0.3576 REMARK 3 L13: 1.1218 L23: -0.5749 REMARK 3 S TENSOR REMARK 3 S11: 0.0309 S12: 0.0543 S13: -0.1940 REMARK 3 S21: -0.0767 S22: 0.0184 S23: 0.0476 REMARK 3 S31: 0.1078 S32: -0.0228 S33: -0.0493 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 61 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1825 10.5775 27.1311 REMARK 3 T TENSOR REMARK 3 T11: 0.0475 T22: 0.0629 REMARK 3 T33: 0.0089 T12: -0.0455 REMARK 3 T13: -0.0176 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 3.6253 L22: 1.8068 REMARK 3 L33: 3.5347 L12: 1.7184 REMARK 3 L13: 2.5918 L23: -1.0351 REMARK 3 S TENSOR REMARK 3 S11: 0.2743 S12: -0.3228 S13: 0.1245 REMARK 3 S21: -0.0935 S22: 0.0356 S23: 0.2313 REMARK 3 S31: 0.4498 S32: -0.4586 S33: -0.3099 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 80 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7091 3.1028 37.2966 REMARK 3 T TENSOR REMARK 3 T11: 0.0678 T22: 0.0924 REMARK 3 T33: 0.0089 T12: -0.0467 REMARK 3 T13: 0.0171 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 6.2440 L22: 0.6167 REMARK 3 L33: 1.8048 L12: 1.1699 REMARK 3 L13: -2.7725 L23: 0.0158 REMARK 3 S TENSOR REMARK 3 S11: -0.2305 S12: -0.0783 S13: -0.1366 REMARK 3 S21: -0.0896 S22: 0.1674 S23: -0.1014 REMARK 3 S31: 0.2184 S32: -0.0681 S33: 0.0631 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 81 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): -3.5762 10.9746 37.2227 REMARK 3 T TENSOR REMARK 3 T11: 0.0149 T22: 0.0496 REMARK 3 T33: 0.0456 T12: -0.0105 REMARK 3 T13: 0.0029 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: -0.7562 L22: 5.1013 REMARK 3 L33: 3.1290 L12: -0.1904 REMARK 3 L13: 0.5775 L23: -2.2556 REMARK 3 S TENSOR REMARK 3 S11: 0.0347 S12: -0.0643 S13: 0.0883 REMARK 3 S21: -0.1115 S22: -0.0082 S23: 0.1641 REMARK 3 S31: 0.2610 S32: -0.2342 S33: -0.0264 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1251 25.4889 28.8340 REMARK 3 T TENSOR REMARK 3 T11: 0.0164 T22: 0.0341 REMARK 3 T33: 0.0552 T12: 0.0043 REMARK 3 T13: -0.0074 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 1.8517 L22: 1.2930 REMARK 3 L33: 1.4517 L12: 0.2519 REMARK 3 L13: -0.7564 L23: -0.2007 REMARK 3 S TENSOR REMARK 3 S11: 0.0543 S12: -0.0096 S13: 0.0479 REMARK 3 S21: -0.1060 S22: 0.0464 S23: 0.1640 REMARK 3 S31: 0.0088 S32: -0.0842 S33: -0.1006 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 109 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4209 19.1526 36.6715 REMARK 3 T TENSOR REMARK 3 T11: 0.0147 T22: 0.0351 REMARK 3 T33: 0.0438 T12: -0.0023 REMARK 3 T13: 0.0049 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: -0.7446 L22: 4.9742 REMARK 3 L33: 2.6963 L12: -0.7245 REMARK 3 L13: 0.0675 L23: -0.9753 REMARK 3 S TENSOR REMARK 3 S11: 0.0240 S12: -0.0036 S13: 0.0020 REMARK 3 S21: 0.1132 S22: -0.0281 S23: 0.2495 REMARK 3 S31: 0.0251 S32: -0.0305 S33: 0.0041 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3597 9.8965 38.8780 REMARK 3 T TENSOR REMARK 3 T11: 0.0522 T22: 0.0267 REMARK 3 T33: 0.0187 T12: 0.0035 REMARK 3 T13: 0.0009 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.9686 L22: 0.0654 REMARK 3 L33: 0.6614 L12: 0.1297 REMARK 3 L13: 0.8318 L23: -0.2051 REMARK 3 S TENSOR REMARK 3 S11: 0.0504 S12: -0.0042 S13: -0.0432 REMARK 3 S21: -0.0167 S22: -0.0131 S23: -0.0089 REMARK 3 S31: 0.0788 S32: 0.0224 S33: -0.0373 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3S0D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065601. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8265 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30933 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.240 REMARK 200 RESOLUTION RANGE LOW (A) : 45.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3S0A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8-1.9 M TRI-SODIUM CITRATE, 25 MM REMARK 280 CHES, PH 9.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.20000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.07500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.93000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.07500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.20000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 18.93000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 208 O HOH A 246 1.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CTV A 120 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3RZS RELATED DB: PDB REMARK 900 APIS MELLIFERA OBP14 IN COMPLEX WITH TA6BR14 REMARK 900 RELATED ID: 3S0A RELATED DB: PDB REMARK 900 APIS MELLIFERA OBP14, NATIVE APO-PROTEIN REMARK 900 RELATED ID: 3S0B RELATED DB: PDB REMARK 900 APIS MELLIFERA OBP14 IN COMPLEX WITH THE FLUORESCENT PROBE 1-N- REMARK 900 PHENYLNAPHTHYLAMINE REMARK 900 RELATED ID: 3S0E RELATED DB: PDB REMARK 900 APIS MELLIFERA OBP14 IN COMPLEX WITH THE ODORANT EUGENOL REMARK 900 RELATED ID: 3S0F RELATED DB: PDB REMARK 900 APIS MELLIFERA OBP14, NATIVE APO, CRYSTAL FORM 2 REMARK 900 RELATED ID: 3S0G RELATED DB: PDB REMARK 900 APIS MELLIFERA OBP 14 DOUBLE MUTANT GLN44CYS, HIS97CYS DBREF 3S0D A 2 119 UNP Q1W640 Q1W640_APIME 18 135 SEQADV 3S0D MET A 1 UNP Q1W640 INITIATING METHIONINE SEQRES 1 A 119 MET THR ILE GLU GLU LEU LYS THR ARG LEU HIS THR GLU SEQRES 2 A 119 GLN SER VAL CYS LYS THR GLU THR GLY ILE ASP GLN GLN SEQRES 3 A 119 LYS ALA ASN ASP VAL ILE GLU GLY ASN ILE ASP VAL GLU SEQRES 4 A 119 ASP LYS LYS VAL GLN LEU TYR CYS GLU CYS ILE LEU LYS SEQRES 5 A 119 ASN PHE ASN ILE LEU ASP LYS ASN ASN VAL PHE LYS PRO SEQRES 6 A 119 GLN GLY ILE LYS ALA VAL MET GLU LEU LEU ILE ASP GLU SEQRES 7 A 119 ASN SER VAL LYS GLN LEU VAL SER ASP CYS SER THR ILE SEQRES 8 A 119 SER GLU GLU ASN PRO HIS LEU LYS ALA SER LYS LEU VAL SEQRES 9 A 119 GLN CYS VAL SER LYS TYR LYS THR MET LYS SER VAL ASP SEQRES 10 A 119 PHE LEU HET CTV A 120 11 HETNAM CTV (2Z)-3,7-DIMETHYLOCTA-2,6-DIENENITRILE HETSYN CTV CITRALVA FORMUL 2 CTV C10 H15 N FORMUL 3 HOH *171(H2 O) HELIX 1 1 THR A 2 GLY A 22 1 21 HELIX 2 2 ASP A 24 GLU A 33 1 10 HELIX 3 3 ASP A 40 PHE A 54 1 15 HELIX 4 4 LYS A 64 GLU A 73 1 10 HELIX 5 5 ASP A 77 SER A 89 1 13 HELIX 6 6 ASN A 95 LYS A 109 1 15 HELIX 7 7 THR A 112 ASP A 117 1 6 SSBOND 1 CYS A 17 CYS A 49 1555 1555 2.05 SSBOND 2 CYS A 88 CYS A 106 1555 1555 1.98 SITE 1 AC1 8 PHE A 54 ILE A 56 LEU A 75 VAL A 104 SITE 2 AC1 8 VAL A 107 SER A 108 LYS A 111 MET A 113 CRYST1 32.400 37.860 86.150 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030864 0.000000 0.000000 0.00000 SCALE2 0.000000 0.026413 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011608 0.00000