HEADER LYASE 13-MAY-11 3S0M TITLE A STRUCTURAL ELEMENT THAT MODULATES PROTON-COUPLED ELECTRON TRANSFER TITLE 2 IN OXALATE DECARBOXYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXALATE DECARBOXYLASE OXDC; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.1.2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: SUBSP. SUBTILIS STR. 168; SOURCE 5 GENE: BSU33240, OXALATE DECARBOXYLASE, OXDC, YVRK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET15B; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B-T165V KEYWDS BICUPIN, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR B.T.SAYLOR,L.A.REINHARDT,Z.LU,M.S.SHUKLA,W.W.CLELAND,K.N.ALLEN, AUTHOR 2 N.G.J.RICHARDS REVDAT 3 28-FEB-24 3S0M 1 REMARK SEQADV LINK REVDAT 2 08-NOV-17 3S0M 1 REMARK REVDAT 1 25-APR-12 3S0M 0 JRNL AUTH B.T.SAYLOR,L.A.REINHARDT,Z.LU,M.S.SHUKLA,L.NGUYEN, JRNL AUTH 2 W.W.CLELAND,A.ANGERHOFER,K.N.ALLEN,N.G.RICHARDS JRNL TITL A STRUCTURAL ELEMENT THAT FACILITATES PROTON-COUPLED JRNL TITL 2 ELECTRON TRANSFER IN OXALATE DECARBOXYLASE. JRNL REF BIOCHEMISTRY V. 51 2911 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22404040 JRNL DOI 10.1021/BI300001Q REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7_650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.5 REMARK 3 NUMBER OF REFLECTIONS : 41624 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3353 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.6142 - 6.6162 0.98 1793 164 0.1511 0.1876 REMARK 3 2 6.6162 - 5.2707 0.98 1775 157 0.1436 0.2155 REMARK 3 3 5.2707 - 4.6101 0.98 1775 158 0.1013 0.1480 REMARK 3 4 4.6101 - 4.1911 0.93 1708 148 0.1199 0.1753 REMARK 3 5 4.1911 - 3.8922 0.93 1683 150 0.1219 0.1802 REMARK 3 6 3.8922 - 3.6636 0.88 1623 133 0.1660 0.2194 REMARK 3 7 3.6636 - 3.4807 0.85 1556 134 0.1721 0.2578 REMARK 3 8 3.4807 - 3.3296 0.88 1610 137 0.1598 0.2226 REMARK 3 9 3.3296 - 3.2018 0.88 1603 143 0.1675 0.2206 REMARK 3 10 3.2018 - 3.0915 0.87 1567 137 0.1714 0.2541 REMARK 3 11 3.0915 - 2.9950 0.82 1503 142 0.1864 0.3177 REMARK 3 12 2.9950 - 2.9096 0.83 1494 131 0.2030 0.2805 REMARK 3 13 2.9096 - 2.8331 0.84 1548 134 0.2293 0.2963 REMARK 3 14 2.8331 - 2.7641 0.83 1510 122 0.2131 0.2768 REMARK 3 15 2.7641 - 2.7014 0.85 1542 136 0.2273 0.2781 REMARK 3 16 2.7014 - 2.6440 0.86 1571 138 0.2233 0.3322 REMARK 3 17 2.6440 - 2.5911 0.87 1601 140 0.2231 0.2896 REMARK 3 18 2.5911 - 2.5423 0.89 1618 137 0.2346 0.3238 REMARK 3 19 2.5423 - 2.4969 0.89 1593 139 0.2380 0.3207 REMARK 3 20 2.4969 - 2.4547 0.88 1574 141 0.2291 0.3163 REMARK 3 21 2.4547 - 2.4151 0.88 1648 140 0.2330 0.3855 REMARK 3 22 2.4151 - 2.3780 0.86 1566 143 0.2407 0.3067 REMARK 3 23 2.3780 - 2.3430 0.82 1471 134 0.2536 0.3100 REMARK 3 24 2.3430 - 2.3101 0.74 1339 115 0.2757 0.2988 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 33.24 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.05570 REMARK 3 B22 (A**2) : -8.05570 REMARK 3 B33 (A**2) : 4.82830 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3114 REMARK 3 ANGLE : 1.023 4218 REMARK 3 CHIRALITY : 0.072 444 REMARK 3 PLANARITY : 0.003 554 REMARK 3 DIHEDRAL : 13.802 1144 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 6:24) REMARK 3 ORIGIN FOR THE GROUP (A): -31.5312 -24.9591 -68.3621 REMARK 3 T TENSOR REMARK 3 T11: 0.0144 T22: 0.0346 REMARK 3 T33: 0.0182 T12: -0.0008 REMARK 3 T13: 0.0023 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.0004 L22: 0.0003 REMARK 3 L33: 0.0006 L12: 0.0002 REMARK 3 L13: 0.0004 L23: -0.0001 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: 0.0002 S13: -0.0038 REMARK 3 S21: 0.0034 S22: -0.0031 S23: -0.0041 REMARK 3 S31: 0.0019 S32: 0.0042 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 25:155) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1528 -25.0859 -46.4610 REMARK 3 T TENSOR REMARK 3 T11: -0.0005 T22: 0.0060 REMARK 3 T33: -0.0020 T12: 0.0013 REMARK 3 T13: -0.0117 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.0046 L22: 0.0125 REMARK 3 L33: 0.0172 L12: 0.0020 REMARK 3 L13: 0.0022 L23: -0.0011 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: -0.0042 S13: -0.0005 REMARK 3 S21: 0.0048 S22: -0.0122 S23: -0.0019 REMARK 3 S31: -0.0036 S32: 0.0031 S33: -0.0697 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 156:213) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4828 -28.3122 -45.0978 REMARK 3 T TENSOR REMARK 3 T11: 0.0149 T22: 0.0114 REMARK 3 T33: 0.0109 T12: 0.0071 REMARK 3 T13: -0.0063 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.0016 L22: 0.0048 REMARK 3 L33: 0.0044 L12: 0.0022 REMARK 3 L13: -0.0026 L23: -0.0046 REMARK 3 S TENSOR REMARK 3 S11: -0.0043 S12: 0.0002 S13: -0.0002 REMARK 3 S21: -0.0009 S22: -0.0001 S23: -0.0031 REMARK 3 S31: -0.0045 S32: 0.0028 S33: -0.0047 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 214:240) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7209 -22.9156 -27.0165 REMARK 3 T TENSOR REMARK 3 T11: 0.0455 T22: 0.0303 REMARK 3 T33: 0.0234 T12: -0.0011 REMARK 3 T13: 0.0027 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 0.0029 L22: 0.0051 REMARK 3 L33: 0.0063 L12: -0.0024 REMARK 3 L13: 0.0029 L23: -0.0037 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: -0.0019 S13: 0.0013 REMARK 3 S21: 0.0006 S22: 0.0006 S23: 0.0033 REMARK 3 S31: -0.0026 S32: -0.0011 S33: -0.0045 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 241:353) REMARK 3 ORIGIN FOR THE GROUP (A): -19.1291 -15.7509 -42.2427 REMARK 3 T TENSOR REMARK 3 T11: 0.0002 T22: 0.0031 REMARK 3 T33: 0.0070 T12: 0.0088 REMARK 3 T13: 0.0106 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.0104 L22: 0.0134 REMARK 3 L33: 0.0177 L12: 0.0044 REMARK 3 L13: -0.0043 L23: -0.0067 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: -0.0044 S13: 0.0025 REMARK 3 S21: 0.0046 S22: 0.0033 S23: 0.0037 REMARK 3 S31: -0.0048 S32: -0.0021 S33: 0.0350 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 354:382) REMARK 3 ORIGIN FOR THE GROUP (A): -36.7511 -7.9984 -35.6364 REMARK 3 T TENSOR REMARK 3 T11: 0.0252 T22: 0.0252 REMARK 3 T33: 0.0280 T12: 0.0042 REMARK 3 T13: 0.0210 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0005 REMARK 3 L33: 0.0007 L12: 0.0000 REMARK 3 L13: -0.0001 L23: -0.0007 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: 0.0034 S13: 0.0059 REMARK 3 S21: 0.0012 S22: 0.0033 S23: 0.0033 REMARK 3 S31: -0.0034 S32: -0.0077 S33: 0.0078 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3S0M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065610. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : APEX II CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT, APEX REMARK 200 DATA SCALING SOFTWARE : APEX REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.310 REMARK 200 RESOLUTION RANGE LOW (A) : 23.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.680 REMARK 200 R MERGE (I) : 0.18610 REMARK 200 R SYM (I) : 0.26350 REMARK 200 FOR THE DATA SET : 5.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.07 REMARK 200 R MERGE FOR SHELL (I) : 0.47350 REMARK 200 R SYM FOR SHELL (I) : 0.43260 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V POLYETHYLENE GLYCOL 6000, 2 M REMARK 280 AQ. NACL , PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 77.38050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.67565 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 40.49967 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 77.38050 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 44.67565 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 40.49967 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 77.38050 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 44.67565 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 40.49967 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 77.38050 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 44.67565 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 40.49967 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 77.38050 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 44.67565 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 40.49967 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 77.38050 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 44.67565 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.49967 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 89.35131 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 80.99933 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 89.35131 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 80.99933 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 89.35131 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 80.99933 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 89.35131 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 80.99933 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 89.35131 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 80.99933 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 89.35131 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 80.99933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 50410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 71460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -284.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -121.49900 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -121.49900 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -121.49900 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 630 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 31 53.23 -113.91 REMARK 500 HIS A 42 135.83 -171.43 REMARK 500 SER A 136 128.14 -38.94 REMARK 500 LEU A 145 -151.25 -93.58 REMARK 500 ASP A 156 43.55 -84.98 REMARK 500 TYR A 200 -65.82 67.97 REMARK 500 PRO A 218 -15.76 -49.33 REMARK 500 SER A 296 174.33 67.21 REMARK 500 TYR A 312 136.21 -171.16 REMARK 500 PHE A 315 111.14 -17.28 REMARK 500 ALA A 316 -3.60 77.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 CO3 A 600 REMARK 615 EDO A 3312 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 95 NE2 REMARK 620 2 HIS A 97 NE2 103.8 REMARK 620 3 GLU A 101 OE1 161.6 82.9 REMARK 620 4 HIS A 140 NE2 80.9 87.1 82.5 REMARK 620 5 CO3 A 600 O2 87.4 92.3 109.6 167.8 REMARK 620 6 HOH A 657 O 94.1 160.8 78.0 89.0 95.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 273 NE2 REMARK 620 2 HIS A 275 NE2 92.0 REMARK 620 3 GLU A 280 OE2 158.0 73.3 REMARK 620 4 HIS A 319 NE2 83.4 101.4 115.1 REMARK 620 5 HOH A 576 O 89.4 155.3 97.2 103.3 REMARK 620 6 HOH A 720 O 75.8 73.9 84.3 158.4 82.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1J58 RELATED DB: PDB REMARK 900 T165V MUTANT DBREF 3S0M A 6 382 UNP O34714 OXDC_BACSU 6 382 SEQADV 3S0M VAL A 165 UNP O34714 THR 165 ENGINEERED MUTATION SEQRES 1 A 377 ASP ILE PRO GLN PRO ILE ARG GLY ASP LYS GLY ALA THR SEQRES 2 A 377 VAL LYS ILE PRO ARG ASN ILE GLU ARG ASP ARG GLN ASN SEQRES 3 A 377 PRO ASP MET LEU VAL PRO PRO GLU THR ASP HIS GLY THR SEQRES 4 A 377 VAL SER ASN MET LYS PHE SER PHE SER ASP THR HIS ASN SEQRES 5 A 377 ARG LEU GLU LYS GLY GLY TYR ALA ARG GLU VAL THR VAL SEQRES 6 A 377 ARG GLU LEU PRO ILE SER GLU ASN LEU ALA SER VAL ASN SEQRES 7 A 377 MET ARG LEU LYS PRO GLY ALA ILE ARG GLU LEU HIS TRP SEQRES 8 A 377 HIS LYS GLU ALA GLU TRP ALA TYR MET ILE TYR GLY SER SEQRES 9 A 377 ALA ARG VAL THR ILE VAL ASP GLU LYS GLY ARG SER PHE SEQRES 10 A 377 ILE ASP ASP VAL GLY GLU GLY ASP LEU TRP TYR PHE PRO SEQRES 11 A 377 SER GLY LEU PRO HIS SER ILE GLN ALA LEU GLU GLU GLY SEQRES 12 A 377 ALA GLU PHE LEU LEU VAL PHE ASP ASP GLY SER PHE SER SEQRES 13 A 377 GLU ASN SER VAL PHE GLN LEU THR ASP TRP LEU ALA HIS SEQRES 14 A 377 THR PRO LYS GLU VAL ILE ALA ALA ASN PHE GLY VAL THR SEQRES 15 A 377 LYS GLU GLU ILE SER ASN LEU PRO GLY LYS GLU LYS TYR SEQRES 16 A 377 ILE PHE GLU ASN GLN LEU PRO GLY SER LEU LYS ASP ASP SEQRES 17 A 377 ILE VAL GLU GLY PRO ASN GLY GLU VAL PRO TYR PRO PHE SEQRES 18 A 377 THR TYR ARG LEU LEU GLU GLN GLU PRO ILE GLU SER GLU SEQRES 19 A 377 GLY GLY LYS VAL TYR ILE ALA ASP SER THR ASN PHE LYS SEQRES 20 A 377 VAL SER LYS THR ILE ALA SER ALA LEU VAL THR VAL GLU SEQRES 21 A 377 PRO GLY ALA MET ARG GLU LEU HIS TRP HIS PRO ASN THR SEQRES 22 A 377 HIS GLU TRP GLN TYR TYR ILE SER GLY LYS ALA ARG MET SEQRES 23 A 377 THR VAL PHE ALA SER ASP GLY HIS ALA ARG THR PHE ASN SEQRES 24 A 377 TYR GLN ALA GLY ASP VAL GLY TYR VAL PRO PHE ALA MET SEQRES 25 A 377 GLY HIS TYR VAL GLU ASN ILE GLY ASP GLU PRO LEU VAL SEQRES 26 A 377 PHE LEU GLU ILE PHE LYS ASP ASP HIS TYR ALA ASP VAL SEQRES 27 A 377 SER LEU ASN GLN TRP LEU ALA MET LEU PRO GLU THR PHE SEQRES 28 A 377 VAL GLN ALA HIS LEU ASP LEU GLY LYS ASP PHE THR ASP SEQRES 29 A 377 VAL LEU SER LYS GLU LYS HIS PRO VAL VAL LYS LYS LYS HET MN A 500 1 HET MN A 501 1 HET CO3 A 600 4 HET EDO A3311 4 HET EDO A3312 4 HET EDO A3313 4 HET PEG A 1 7 HETNAM MN MANGANESE (II) ION HETNAM CO3 CARBONATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MN 2(MN 2+) FORMUL 4 CO3 C O3 2- FORMUL 5 EDO 3(C2 H6 O2) FORMUL 8 PEG C4 H10 O3 FORMUL 9 HOH *350(H2 O) HELIX 1 1 ASN A 24 ASN A 31 1 8 HELIX 2 2 ASN A 31 VAL A 36 1 6 HELIX 3 3 SER A 53 THR A 55 5 3 HELIX 4 4 LEU A 168 ALA A 173 1 6 HELIX 5 5 PRO A 176 GLY A 185 1 10 HELIX 6 6 LYS A 188 SER A 192 5 5 HELIX 7 7 LEU A 231 GLN A 233 5 3 HELIX 8 8 LEU A 345 MET A 351 1 7 HELIX 9 9 PRO A 353 ASP A 362 1 10 HELIX 10 10 GLY A 364 ASP A 369 1 6 SHEET 1 A 2 ILE A 11 ARG A 12 0 SHEET 2 A 2 LYS A 15 GLY A 16 -1 O LYS A 15 N ARG A 12 SHEET 1 B 7 LYS A 49 SER A 51 0 SHEET 2 B 7 ASP A 309 VAL A 313 -1 O VAL A 310 N PHE A 50 SHEET 3 B 7 GLU A 280 SER A 286 -1 N GLU A 280 O VAL A 313 SHEET 4 B 7 LEU A 329 PHE A 335 -1 O ILE A 334 N TRP A 281 SHEET 5 B 7 ALA A 258 VAL A 264 -1 N VAL A 264 O LEU A 329 SHEET 6 B 7 GLY A 241 ALA A 246 -1 N ALA A 246 O SER A 259 SHEET 7 B 7 ILE A 236 SER A 238 -1 N SER A 238 O GLY A 241 SHEET 1 C 6 ARG A 58 GLU A 60 0 SHEET 2 C 6 GLY A 63 VAL A 68 -1 O ALA A 65 N ARG A 58 SHEET 3 C 6 ALA A 80 LEU A 86 -1 O ASN A 83 N ARG A 66 SHEET 4 C 6 HIS A 140 PHE A 155 -1 O LEU A 153 N VAL A 82 SHEET 5 C 6 ILE A 91 TRP A 96 -1 N HIS A 95 O HIS A 140 SHEET 6 C 6 PHE A 166 GLN A 167 -1 O PHE A 166 N TRP A 96 SHEET 1 D 4 SER A 121 GLY A 127 0 SHEET 2 D 4 GLU A 101 VAL A 115 -1 N ILE A 114 O PHE A 122 SHEET 3 D 4 ASP A 130 PHE A 134 -1 O PHE A 134 N GLU A 101 SHEET 4 D 4 THR A 227 ARG A 229 -1 O TYR A 228 N LEU A 131 SHEET 1 E 5 SER A 121 GLY A 127 0 SHEET 2 E 5 GLU A 101 VAL A 115 -1 N ILE A 114 O PHE A 122 SHEET 3 E 5 HIS A 140 PHE A 155 -1 O GLU A 150 N TYR A 107 SHEET 4 E 5 ILE A 91 TRP A 96 -1 N HIS A 95 O HIS A 140 SHEET 5 E 5 ILE A 201 PHE A 202 -1 O PHE A 202 N ILE A 91 SHEET 1 F 3 PHE A 166 GLN A 167 0 SHEET 2 F 3 ILE A 91 TRP A 96 -1 N TRP A 96 O PHE A 166 SHEET 3 F 3 ILE A 201 PHE A 202 -1 O PHE A 202 N ILE A 91 SHEET 1 G 5 ALA A 300 GLN A 306 0 SHEET 2 G 5 LYS A 288 PHE A 294 -1 N MET A 291 O PHE A 303 SHEET 3 G 5 HIS A 319 ASN A 323 -1 O GLU A 322 N ARG A 290 SHEET 4 G 5 ALA A 268 TRP A 274 -1 N ARG A 270 O VAL A 321 SHEET 5 G 5 VAL A 343 SER A 344 -1 O VAL A 343 N TRP A 274 SHEET 1 H 5 ALA A 300 GLN A 306 0 SHEET 2 H 5 LYS A 288 PHE A 294 -1 N MET A 291 O PHE A 303 SHEET 3 H 5 HIS A 319 ASN A 323 -1 O GLU A 322 N ARG A 290 SHEET 4 H 5 ALA A 268 TRP A 274 -1 N ARG A 270 O VAL A 321 SHEET 5 H 5 VAL A 378 LYS A 380 -1 O VAL A 379 N MET A 269 LINK NE2 HIS A 95 MN MN A 500 1555 1555 2.15 LINK NE2 HIS A 97 MN MN A 500 1555 1555 2.46 LINK OE1 GLU A 101 MN MN A 500 1555 1555 2.18 LINK NE2 HIS A 140 MN MN A 500 1555 1555 2.34 LINK NE2 HIS A 273 MN MN A 501 1555 1555 2.35 LINK NE2 HIS A 275 MN MN A 501 1555 1555 2.27 LINK OE2 GLU A 280 MN MN A 501 1555 1555 2.29 LINK NE2 HIS A 319 MN MN A 501 1555 1555 2.29 LINK MN MN A 500 O2 CO3 A 600 1555 1555 2.49 LINK MN MN A 500 O HOH A 657 1555 1555 2.42 LINK MN MN A 501 O HOH A 576 1555 1555 2.35 LINK MN MN A 501 O HOH A 720 1555 1555 2.16 SITE 1 AC1 6 HIS A 95 HIS A 97 GLU A 101 HIS A 140 SITE 2 AC1 6 CO3 A 600 HOH A 657 SITE 1 AC2 6 HIS A 273 HIS A 275 GLU A 280 HIS A 319 SITE 2 AC2 6 HOH A 576 HOH A 720 SITE 1 AC3 8 MET A 84 ARG A 92 HIS A 95 HIS A 97 SITE 2 AC3 8 LEU A 153 PHE A 155 TYR A 200 MN A 500 SITE 1 AC4 4 GLN A 205 HOH A 491 HOH A 529 HOH A 702 SITE 1 AC5 7 PRO A 38 GLU A 39 PRO A 176 GLU A 178 SITE 2 AC5 7 HOH A 524 HOH A 588 HOH A 590 SITE 1 AC6 8 GLN A 30 LYS A 288 ALA A 289 ASN A 304 SITE 2 AC6 8 TYR A 305 GLN A 306 ILE A 324 HOH A 602 SITE 1 AC7 8 ILE A 11 GLY A 16 ALA A 17 THR A 18 SITE 2 AC7 8 ARG A 85 LYS A 87 GLU A 146 HOH A 401 CRYST1 154.761 154.761 121.499 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006462 0.003731 0.000000 0.00000 SCALE2 0.000000 0.007461 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008231 0.00000