HEADER VIRAL PROTEIN 14-MAY-11 3S12 TITLE CRYSTAL STRUCTURE OF H5N1 INFLUENZA VIRUS HEMAGGLUTININ, STRAIN YU562 TITLE 2 CRYSTAL FORM 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ HA1 CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEMAGGLUTININ HA2 CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 196426; SOURCE 4 STRAIN: A/CHICKEN/HONG KONG/YU562/2001 (H5N1); SOURCE 5 GENE: HA; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PACGP67B; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 14 ORGANISM_TAXID: 196426; SOURCE 15 STRAIN: A/CHICKEN/HONG KONG/YU562/2001 (H5N1); SOURCE 16 GENE: HA; SOURCE 17 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 18 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PACGP67B KEYWDS HEMAGGLUTININ, VIRAL PROTEIN, VIRAL ENVELOPE PROTEIN, VIRAL FUSION KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.M.DUBOIS,H.ZARAKET,M.REDDIVARI,R.J.HEATH,S.W.WHITE,C.J.RUSSELL REVDAT 3 29-JUL-20 3S12 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 28-MAR-12 3S12 1 JRNL REVDAT 1 14-DEC-11 3S12 0 JRNL AUTH R.M.DUBOIS,H.ZARAKET,M.REDDIVARI,R.J.HEATH,S.W.WHITE, JRNL AUTH 2 C.J.RUSSELL JRNL TITL ACID STABILITY OF THE HEMAGGLUTININ PROTEIN REGULATES H5N1 JRNL TITL 2 INFLUENZA VIRUS PATHOGENICITY. JRNL REF PLOS PATHOG. V. 7 02398 2011 JRNL REFN ISSN 1553-7366 JRNL PMID 22144894 JRNL DOI 10.1371/JOURNAL.PPAT.1002398 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 134.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 17391 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 940 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1238 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3792 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.64000 REMARK 3 B22 (A**2) : 2.64000 REMARK 3 B33 (A**2) : -3.95000 REMARK 3 B12 (A**2) : 1.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.970 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.394 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.276 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.382 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.896 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.858 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3934 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5327 ; 1.117 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 472 ; 5.777 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 196 ;38.871 ;25.306 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 670 ;19.010 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.818 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 572 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2990 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2362 ; 0.401 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3808 ; 0.780 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1572 ; 0.997 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1519 ; 1.714 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3S12 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065626. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18334 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.15100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.80 REMARK 200 R MERGE FOR SHELL (I) : 0.45900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.62M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 CACODYLATE PH 6.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -219.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -56.27600 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 97.47289 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -112.55200 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A -2 REMARK 465 LEU A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 MET A 2 REMARK 465 ALA A 3 REMARK 465 ASP A 4 REMARK 465 PRO A 5 REMARK 465 GLY A 6 REMARK 465 TYR A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 GLU A 78 REMARK 465 PHE A 79 REMARK 465 ILE A 80 REMARK 465 PRO A 324 REMARK 465 GLN A 325 REMARK 465 ARG A 326 REMARK 465 GLY B 1 REMARK 465 LEU B 2 REMARK 465 PHE B 3 REMARK 465 GLY B 4 REMARK 465 ALA B 5 REMARK 465 ILE B 6 REMARK 465 ALA B 7 REMARK 465 GLY B 8 REMARK 465 PHE B 9 REMARK 465 LEU B 168 REMARK 465 ASN B 169 REMARK 465 ARG B 170 REMARK 465 GLU B 171 REMARK 465 GLU B 172 REMARK 465 ILE B 173 REMARK 465 SER B 174 REMARK 465 GLY B 175 REMARK 465 VAL B 176 REMARK 465 ARG B 177 REMARK 465 SER B 178 REMARK 465 LEU B 179 REMARK 465 VAL B 180 REMARK 465 PRO B 181 REMARK 465 ARG B 182 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 10 CB CG CD OE1 OE2 REMARK 470 GLN B 161 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 31 -39.99 -134.45 REMARK 500 ASP A 63 24.86 -144.03 REMARK 500 ASP A 96 -90.85 -120.95 REMARK 500 CYS A 139 65.77 -118.87 REMARK 500 SER A 146 -158.26 -139.40 REMARK 500 PHE A 148 125.16 -37.19 REMARK 500 GLN A 196 -58.98 67.38 REMARK 500 THR A 206 -157.27 -119.69 REMARK 500 ASN A 240 -7.80 80.64 REMARK 500 ASN A 250 10.73 58.00 REMARK 500 LYS A 263 -88.19 -109.22 REMARK 500 SER A 265 -161.51 -162.49 REMARK 500 LEU A 272 -179.97 -68.96 REMARK 500 LYS A 310 35.52 -86.58 REMARK 500 ASN A 322 -168.90 -105.19 REMARK 500 ASN B 28 -154.92 -110.96 REMARK 500 ARG B 127 -128.99 52.65 REMARK 500 PRO B 160 29.30 -65.54 REMARK 500 GLN B 161 -61.01 -127.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3S11 RELATED DB: PDB REMARK 900 RELATED ID: 3S13 RELATED DB: PDB DBREF 3S12 A 11 326 UNP Q80A30 HEMA_I01A1 6 328 DBREF 3S12 B 1 176 UNP Q80A30 HEMA_I01A1 336 511 SEQADV 3S12 ASP A -2 UNP Q80A30 EXPRESSION TAG SEQADV 3S12 LEU A -1 UNP Q80A30 EXPRESSION TAG SEQADV 3S12 GLY A 0 UNP Q80A30 EXPRESSION TAG SEQADV 3S12 SER A 1 UNP Q80A30 EXPRESSION TAG SEQADV 3S12 MET A 2 UNP Q80A30 EXPRESSION TAG SEQADV 3S12 ALA A 3 UNP Q80A30 EXPRESSION TAG SEQADV 3S12 ASP A 4 UNP Q80A30 EXPRESSION TAG SEQADV 3S12 PRO A 5 UNP Q80A30 EXPRESSION TAG SEQADV 3S12 GLY A 6 UNP Q80A30 EXPRESSION TAG SEQADV 3S12 TYR A 7 UNP Q80A30 EXPRESSION TAG SEQADV 3S12 LEU A 8 UNP Q80A30 EXPRESSION TAG SEQADV 3S12 LEU A 9 UNP Q80A30 EXPRESSION TAG SEQADV 3S12 GLU A 10 UNP Q80A30 EXPRESSION TAG SEQADV 3S12 ARG B 177 UNP Q80A30 EXPRESSION TAG SEQADV 3S12 SER B 178 UNP Q80A30 EXPRESSION TAG SEQADV 3S12 LEU B 179 UNP Q80A30 EXPRESSION TAG SEQADV 3S12 VAL B 180 UNP Q80A30 EXPRESSION TAG SEQADV 3S12 PRO B 181 UNP Q80A30 EXPRESSION TAG SEQADV 3S12 ARG B 182 UNP Q80A30 EXPRESSION TAG SEQRES 1 A 336 ASP LEU GLY SER MET ALA ASP PRO GLY TYR LEU LEU GLU SEQRES 2 A 336 ASP GLN ILE CYS ILE GLY TYR HIS ALA ASN ASN SER THR SEQRES 3 A 336 GLU GLN VAL ASP THR ILE MET GLU LYS ASN VAL THR VAL SEQRES 4 A 336 THR HIS ALA GLN ASP ILE LEU GLU LYS THR HIS ASN GLY SEQRES 5 A 336 LYS LEU CYS ASP LEU ASP GLY VAL LYS PRO LEU ILE LEU SEQRES 6 A 336 ARG ASP CYS SER VAL ALA GLY TRP LEU LEU GLY ASN PRO SEQRES 7 A 336 MET CYS ASP GLU PHE ILE ASN VAL PRO GLU TRP SER TYR SEQRES 8 A 336 ILE VAL GLU LYS ALA SER PRO ALA ASN ASP LEU CYS TYR SEQRES 9 A 336 PRO GLY ASP PHE ASN ASP TYR GLU GLU LEU LYS HIS LEU SEQRES 10 A 336 LEU SER ARG ILE ASN HIS PHE GLU LYS ILE GLN ILE ILE SEQRES 11 A 336 PRO LYS SER SER TRP SER ASN HIS GLU ALA SER SER GLY SEQRES 12 A 336 VAL SER SER ALA CYS PRO TYR LEU GLY LYS SER SER PHE SEQRES 13 A 336 PHE ARG ASN VAL VAL TRP LEU ILE LYS LYS ASN SER ALA SEQRES 14 A 336 TYR PRO THR ILE LYS ARG SER TYR ASN ASN THR ASN GLN SEQRES 15 A 336 GLU ASP LEU LEU VAL LEU TRP GLY ILE HIS HIS PRO ASN SEQRES 16 A 336 ASP ALA ALA GLU GLN THR LYS LEU TYR GLN ASN PRO THR SEQRES 17 A 336 THR TYR ILE SER VAL GLY THR SER THR LEU ASN GLN ARG SEQRES 18 A 336 LEU VAL PRO LYS ILE ALA THR ARG SER LYS VAL ASN GLY SEQRES 19 A 336 GLN SER GLY ARG MET GLU PHE PHE TRP THR ILE LEU LYS SEQRES 20 A 336 PRO ASN ASP ALA ILE ASN PHE GLU SER ASN GLY ASN PHE SEQRES 21 A 336 ILE ALA PRO GLU TYR ALA TYR LYS ILE VAL LYS LYS GLY SEQRES 22 A 336 ASP SER ALA ILE MET LYS SER GLU LEU GLU TYR GLY ASN SEQRES 23 A 336 CYS ASN THR LYS CYS GLN THR PRO MET GLY ALA ILE ASN SEQRES 24 A 336 SER SER MET PRO PHE HIS ASN ILE HIS PRO LEU THR ILE SEQRES 25 A 336 GLY GLU CYS PRO LYS TYR VAL LYS SER ASN ARG LEU VAL SEQRES 26 A 336 LEU ALA THR GLY LEU ARG ASN THR PRO GLN ARG SEQRES 1 B 182 GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU GLY GLY SEQRES 2 B 182 TRP GLN GLY MET VAL ASP GLY TRP TYR GLY TYR HIS HIS SEQRES 3 B 182 SER ASN GLU GLN GLY SER GLY TYR ALA ALA ASP LYS GLU SEQRES 4 B 182 SER THR GLN LYS ALA ILE ASP GLY VAL THR ASN LYS VAL SEQRES 5 B 182 ASN SER ILE ILE ASP LYS MET ASN THR GLN PHE GLU ALA SEQRES 6 B 182 VAL GLY ARG GLU PHE ASN ASN LEU GLU ARG ARG ILE GLU SEQRES 7 B 182 ASN LEU ASN LYS LYS MET GLU ASP GLY PHE LEU ASP VAL SEQRES 8 B 182 TRP THR TYR ASN ALA GLU LEU LEU VAL LEU MET GLU ASN SEQRES 9 B 182 GLU ARG THR LEU ASP PHE HIS ASP SER ASN VAL LYS ASN SEQRES 10 B 182 LEU TYR ASP LYS VAL ARG LEU GLN LEU ARG ASP ASN ALA SEQRES 11 B 182 LYS GLU LEU GLY ASN GLY CYS PHE GLU PHE TYR HIS LYS SEQRES 12 B 182 CYS ASP ASN GLU CYS MET GLU SER VAL LYS ASN GLY THR SEQRES 13 B 182 TYR ASP TYR PRO GLN TYR SER GLU GLU ALA ARG LEU ASN SEQRES 14 B 182 ARG GLU GLU ILE SER GLY VAL ARG SER LEU VAL PRO ARG MODRES 3S12 ASN A 34 ASN GLYCOSYLATION SITE MODRES 3S12 ASN A 169 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET SO4 A 327 5 HET SO4 A 328 5 HET NAG A 329 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *16(H2 O) HELIX 1 1 SER A 65 GLY A 72 1 8 HELIX 2 2 ASP A 104 SER A 113 1 10 HELIX 3 3 PRO A 125 TRP A 127 5 5 HELIX 4 4 ASP A 187 GLN A 196 1 10 HELIX 5 5 ASP B 37 LYS B 58 1 22 HELIX 6 6 GLU B 74 ARG B 127 1 54 HELIX 7 7 ASP B 145 ASN B 154 1 10 HELIX 8 8 ASP B 158 SER B 163 1 6 SHEET 1 A 5 SER B 32 ALA B 36 0 SHEET 2 A 5 TYR B 22 SER B 27 -1 N TYR B 24 O ALA B 35 SHEET 3 A 5 GLN A 12 TYR A 17 -1 N GLY A 16 O GLY B 23 SHEET 4 A 5 CYS B 137 PHE B 140 -1 O PHE B 138 N ILE A 13 SHEET 5 A 5 ALA B 130 GLU B 132 -1 N LYS B 131 O GLU B 139 SHEET 1 B 2 GLN A 24 VAL A 25 0 SHEET 2 B 2 VAL A 35 THR A 35A-1 O VAL A 35 N VAL A 25 SHEET 1 C 2 ALA A 39 ASP A 41 0 SHEET 2 C 2 VAL A 315 ALA A 317 -1 O LEU A 316 N GLN A 40 SHEET 1 D 3 LEU A 43 GLU A 44 0 SHEET 2 D 3 PHE A 294 HIS A 295 1 O PHE A 294 N GLU A 44 SHEET 3 D 3 LYS A 307 TYR A 308 1 O LYS A 307 N HIS A 295 SHEET 1 E 2 LEU A 51 LEU A 53A 0 SHEET 2 E 2 TYR A 274 THR A 279 1 O CYS A 277 N ASP A 53 SHEET 1 F 3 LEU A 59 ILE A 60 0 SHEET 2 F 3 ILE A 87 GLU A 89 1 O VAL A 88 N LEU A 59 SHEET 3 F 3 ILE A 267 LYS A 269 1 O MET A 268 N ILE A 87 SHEET 1 G 5 GLY A 100 PHE A 102 0 SHEET 2 G 5 ARG A 229 LEU A 237 1 O PHE A 232 N ASP A 101 SHEET 3 G 5 ASP A 175 HIS A 184 -1 N HIS A 184 O ARG A 229 SHEET 4 G 5 TYR A 256 VAL A 261 -1 O ILE A 260 N ASP A 175 SHEET 5 G 5 HIS A 117 GLN A 122 -1 N GLU A 119 O LYS A 259 SHEET 1 H 5 GLY A 100 PHE A 102 0 SHEET 2 H 5 ARG A 229 LEU A 237 1 O PHE A 232 N ASP A 101 SHEET 3 H 5 ASP A 175 HIS A 184 -1 N HIS A 184 O ARG A 229 SHEET 4 H 5 PHE A 251 PRO A 254 -1 O ILE A 252 N GLY A 181 SHEET 5 H 5 VAL A 151 TRP A 153 -1 N VAL A 152 O ALA A 253 SHEET 1 I 2 SER A 136 TYR A 141 0 SHEET 2 I 2 LYS A 144 SER A 146 -1 O LYS A 144 N TYR A 141 SHEET 1 J 4 ILE A 164 ASN A 169 0 SHEET 2 J 4 ALA A 242 SER A 247 -1 O SER A 247 N ILE A 164 SHEET 3 J 4 ILE A 202 GLY A 205 -1 N SER A 203 O GLU A 246 SHEET 4 J 4 ASN A 210 LEU A 213 -1 O LEU A 213 N ILE A 202 SHEET 1 K 3 CYS A 281 GLN A 282 0 SHEET 2 K 3 ILE A 302 GLY A 303 -1 O ILE A 302 N GLN A 282 SHEET 3 K 3 GLU B 64 ALA B 65 -1 O GLU B 64 N GLY A 303 SSBOND 1 CYS A 14 CYS B 137 1555 1555 2.04 SSBOND 2 CYS A 52 CYS A 277 1555 1555 2.04 SSBOND 3 CYS A 64 CYS A 76 1555 1555 2.04 SSBOND 4 CYS A 97 CYS A 139 1555 1555 2.09 SSBOND 5 CYS A 281 CYS A 305 1555 1555 2.05 SSBOND 6 CYS B 144 CYS B 148 1555 1555 2.02 LINK ND2 ASN A 34 C1 NAG A 329 1555 1555 1.43 LINK ND2 ASN A 169 C1 NAG C 1 1555 1555 1.43 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 CRYST1 112.552 112.552 134.689 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008885 0.005130 0.000000 0.00000 SCALE2 0.000000 0.010259 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007425 0.00000