data_3S1K # _entry.id 3S1K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3S1K RCSB RCSB065644 WWPDB D_1000065644 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3S1B _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3S1K _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-05-15 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Murray, J.M.' 1 'Wiesmann, C.' 2 # _citation.id primary _citation.title 'The development of Peptide-based tools for the analysis of angiogenesis.' _citation.journal_abbrev Chem.Biol. _citation.journal_volume 18 _citation.page_first 839 _citation.page_last 845 _citation.year 2011 _citation.journal_id_ASTM CBOLE2 _citation.country UK _citation.journal_id_ISSN 1074-5521 _citation.journal_id_CSD 2050 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21802005 _citation.pdbx_database_id_DOI 10.1016/j.chembiol.2011.05.011 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Fedorova, A.' 1 primary 'Zobel, K.' 2 primary 'Gill, H.S.' 3 primary 'Ogasawara, A.' 4 primary 'Flores, J.E.' 5 primary 'Tinianow, J.N.' 6 primary 'Vanderbilt, A.N.' 7 primary 'Wu, P.' 8 primary 'Meng, Y.G.' 9 primary 'Williams, S.P.' 10 primary 'Wiesmann, C.' 11 primary 'Murray, J.' 12 primary 'Marik, J.' 13 primary 'Deshayes, K.' 14 # _cell.length_a 69.228 _cell.length_b 72.760 _cell.length_c 76.344 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3S1K _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3S1K _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn Z-domain 6672.466 2 ? ? ? ? 2 polymer man 'Vascular endothelial growth factor A' 11948.680 2 ? ? ? ? 3 water nat water 18.015 37 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'VEGF-A, Vascular permeability factor, VPF' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no VDNKFNKEMHNAYAIEIALLPNLNDQQFHAFIWSLIDDPSQSANLLAEAKKLNDAQAPK VDNKFNKEMHNAYAIEIALLPNLNDQQFHAFIWSLIDDPSQSANLLAEAKKLNDAQAPK A,B ? 2 'polypeptide(L)' no no ;GQNHHEVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQ GQHIGEMSFLQHNKCECRPKKD ; ;GQNHHEVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQ GQHIGEMSFLQHNKCECRPKKD ; V,W ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 ASP n 1 3 ASN n 1 4 LYS n 1 5 PHE n 1 6 ASN n 1 7 LYS n 1 8 GLU n 1 9 MET n 1 10 HIS n 1 11 ASN n 1 12 ALA n 1 13 TYR n 1 14 ALA n 1 15 ILE n 1 16 GLU n 1 17 ILE n 1 18 ALA n 1 19 LEU n 1 20 LEU n 1 21 PRO n 1 22 ASN n 1 23 LEU n 1 24 ASN n 1 25 ASP n 1 26 GLN n 1 27 GLN n 1 28 PHE n 1 29 HIS n 1 30 ALA n 1 31 PHE n 1 32 ILE n 1 33 TRP n 1 34 SER n 1 35 LEU n 1 36 ILE n 1 37 ASP n 1 38 ASP n 1 39 PRO n 1 40 SER n 1 41 GLN n 1 42 SER n 1 43 ALA n 1 44 ASN n 1 45 LEU n 1 46 LEU n 1 47 ALA n 1 48 GLU n 1 49 ALA n 1 50 LYS n 1 51 LYS n 1 52 LEU n 1 53 ASN n 1 54 ASP n 1 55 ALA n 1 56 GLN n 1 57 ALA n 1 58 PRO n 1 59 LYS n 2 1 GLY n 2 2 GLN n 2 3 ASN n 2 4 HIS n 2 5 HIS n 2 6 GLU n 2 7 VAL n 2 8 VAL n 2 9 LYS n 2 10 PHE n 2 11 MET n 2 12 ASP n 2 13 VAL n 2 14 TYR n 2 15 GLN n 2 16 ARG n 2 17 SER n 2 18 TYR n 2 19 CYS n 2 20 HIS n 2 21 PRO n 2 22 ILE n 2 23 GLU n 2 24 THR n 2 25 LEU n 2 26 VAL n 2 27 ASP n 2 28 ILE n 2 29 PHE n 2 30 GLN n 2 31 GLU n 2 32 TYR n 2 33 PRO n 2 34 ASP n 2 35 GLU n 2 36 ILE n 2 37 GLU n 2 38 TYR n 2 39 ILE n 2 40 PHE n 2 41 LYS n 2 42 PRO n 2 43 SER n 2 44 CYS n 2 45 VAL n 2 46 PRO n 2 47 LEU n 2 48 MET n 2 49 ARG n 2 50 CYS n 2 51 GLY n 2 52 GLY n 2 53 CYS n 2 54 CYS n 2 55 ASN n 2 56 ASP n 2 57 GLU n 2 58 GLY n 2 59 LEU n 2 60 GLU n 2 61 CYS n 2 62 VAL n 2 63 PRO n 2 64 THR n 2 65 GLU n 2 66 GLU n 2 67 SER n 2 68 ASN n 2 69 ILE n 2 70 THR n 2 71 MET n 2 72 GLN n 2 73 ILE n 2 74 MET n 2 75 ARG n 2 76 ILE n 2 77 LYS n 2 78 PRO n 2 79 HIS n 2 80 GLN n 2 81 GLY n 2 82 GLN n 2 83 HIS n 2 84 ILE n 2 85 GLY n 2 86 GLU n 2 87 MET n 2 88 SER n 2 89 PHE n 2 90 LEU n 2 91 GLN n 2 92 HIS n 2 93 ASN n 2 94 LYS n 2 95 CYS n 2 96 GLU n 2 97 CYS n 2 98 ARG n 2 99 PRO n 2 100 LYS n 2 101 LYS n 2 102 ASP n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene vegf _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Fmoc solid-phase peptide synthesis' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP VEGFA_HUMAN P15692 2 ;GQNHHEVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQ GQHIGEMSFLQHNKCECRPKKD ; 34 ? 2 PDB 3S1K 3S1K 1 VDNKFNKEMHNAYAIEIALLPNLNDQQFHAFIWSLIDDPSQSANLLAEAKKLNDAQAPK ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3S1K V 1 ? 102 ? P15692 34 ? 135 ? 8 109 2 1 3S1K W 1 ? 102 ? P15692 34 ? 135 ? 8 109 3 2 3S1K A 1 ? 59 ? 3S1K 0 ? 58 ? 0 58 4 2 3S1K B 1 ? 59 ? 3S1K 0 ? 58 ? 0 58 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3S1K _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.58 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 52.35 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 289 _exptl_crystal_grow.pdbx_details '0.2 M KI, 0.1 M MES, PEG 4000 25.0% v/v, pH 6.5, vapor diffusion, hanging drop, temperature 289K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 298.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-04-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol SINGLE _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 # _reflns.entry_id 3S1K _reflns.d_resolution_high 2.400 _reflns.d_resolution_low 52.706 _reflns.number_all 14337 _reflns.number_obs 14337 _reflns.pdbx_Rmerge_I_obs 0.092 _reflns.pdbx_netI_over_sigmaI 9.600 _reflns.pdbx_Rsym_value 0.092 _reflns.pdbx_redundancy 4.800 _reflns.percent_possible_obs 91.700 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.400 2.530 ? 11018 ? 0.557 1.400 0.557 ? 4.900 ? 2230 100.000 1 1 2.530 2.680 ? 8424 ? 0.467 1.700 0.467 ? 4.900 ? 1708 80.100 2 1 2.680 2.870 ? 9397 ? 0.280 2.700 0.280 ? 4.900 ? 1921 95.900 3 1 2.870 3.100 ? 9020 ? 0.179 4.200 0.179 ? 4.800 ? 1860 99.800 4 1 3.100 3.390 ? 8195 ? 0.106 6.600 0.106 ? 4.800 ? 1710 99.800 5 1 3.390 3.790 ? 5241 ? 0.079 8.200 0.079 ? 4.800 ? 1097 69.400 6 1 3.790 4.380 ? 5309 ? 0.057 10.500 0.057 ? 4.600 ? 1162 83.100 7 1 4.380 5.370 ? 4838 ? 0.044 13.200 0.044 ? 4.200 ? 1149 96.300 8 1 5.370 7.590 ? 4566 ? 0.069 8.400 0.069 ? 4.800 ? 942 99.300 9 1 7.590 52.706 ? 2539 ? 0.031 15.600 0.031 ? 4.600 ? 558 98.500 10 1 # _refine.entry_id 3S1K _refine.ls_d_res_high 2.5500 _refine.ls_d_res_low 41.9180 _refine.pdbx_ls_sigma_F 1.390 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.2300 _refine.ls_number_reflns_obs 12982 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details Random _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2288 _refine.ls_R_factor_R_work 0.2266 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2710 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8700 _refine.ls_number_reflns_R_free 632 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 56.9583 _refine.solvent_model_param_bsol 21.9670 _refine.solvent_model_param_ksol 0.3110 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -9.0168 _refine.aniso_B[2][2] 7.6865 _refine.aniso_B[3][3] 1.3303 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.7000 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.0000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.7200 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7681 _refine.B_iso_max 152.200 _refine.B_iso_min 17.840 _refine.pdbx_overall_phase_error 28.9700 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2342 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 37 _refine_hist.number_atoms_total 2379 _refine_hist.d_res_high 2.5500 _refine_hist.d_res_low 41.9180 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 2404 0.004 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 3241 0.785 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 346 0.053 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 431 0.004 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 911 17.443 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.5501 2.7470 5 99.0000 2412 . 0.3181 0.3399 . 128 . 2540 . . 'X-RAY DIFFRACTION' 2.7470 3.0234 5 100.0000 2461 . 0.2878 0.3687 . 110 . 2571 . . 'X-RAY DIFFRACTION' 3.0234 3.4607 5 100.0000 2462 . 0.2525 0.3282 . 126 . 2588 . . 'X-RAY DIFFRACTION' 3.4607 4.3593 5 98.0000 2432 . 0.2086 0.2632 . 124 . 2556 . . 'X-RAY DIFFRACTION' 4.3593 41.9232 5 100.0000 2583 . 0.1868 0.2144 . 144 . 2727 . . 'X-RAY DIFFRACTION' # _struct.entry_id 3S1K _struct.title 'The Development of Peptide-based Tools for the Analysis of Angiogenesis' _struct.pdbx_descriptor 'Vascular endothelial growth factor A, Z-domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3S1K _struct_keywords.text 'VEGF, cystine knot, Z-domain, phage-display, cystine-knot, SIGNALING PROTEIN' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 7 ? LEU A 20 ? LYS A 6 LEU A 19 1 ? 14 HELX_P HELX_P2 2 ASN A 24 ? ASP A 38 ? ASN A 23 ASP A 37 1 ? 15 HELX_P HELX_P3 3 GLN A 41 ? GLN A 56 ? GLN A 40 GLN A 55 1 ? 16 HELX_P HELX_P4 4 LYS B 7 ? LEU B 20 ? LYS B 6 LEU B 19 1 ? 14 HELX_P HELX_P5 5 ASN B 24 ? ASP B 38 ? ASN B 23 ASP B 37 1 ? 15 HELX_P HELX_P6 6 GLN B 41 ? GLN B 56 ? GLN B 40 GLN B 55 1 ? 16 HELX_P HELX_P7 7 LYS C 9 ? TYR C 18 ? LYS V 16 TYR V 25 1 ? 10 HELX_P HELX_P8 8 ILE C 28 ? TYR C 32 ? ILE V 35 TYR V 39 1 ? 5 HELX_P HELX_P9 9 LYS D 9 ? TYR D 18 ? LYS W 16 TYR W 25 1 ? 10 HELX_P HELX_P10 10 ILE D 28 ? TYR D 32 ? ILE W 35 TYR W 39 1 ? 5 HELX_P HELX_P11 11 PRO D 33 ? ILE D 36 ? PRO W 40 ILE W 43 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? C CYS 44 SG ? ? ? 1_555 D CYS 53 SG ? ? V CYS 51 W CYS 60 1_555 ? ? ? ? ? ? ? 2.043 ? disulf2 disulf ? ? C CYS 50 SG ? ? ? 1_555 C CYS 95 SG ? ? V CYS 57 V CYS 102 1_555 ? ? ? ? ? ? ? 2.031 ? disulf3 disulf ? ? C CYS 53 SG ? ? ? 1_555 D CYS 44 SG ? ? V CYS 60 W CYS 51 1_555 ? ? ? ? ? ? ? 2.047 ? disulf4 disulf ? ? C CYS 54 SG ? ? ? 1_555 C CYS 97 SG ? ? V CYS 61 V CYS 104 1_555 ? ? ? ? ? ? ? 2.035 ? disulf5 disulf ? ? D CYS 50 SG ? ? ? 1_555 D CYS 95 SG ? ? W CYS 57 W CYS 102 1_555 ? ? ? ? ? ? ? 2.031 ? disulf6 disulf ? ? D CYS 54 SG ? ? ? 1_555 D CYS 97 SG ? ? W CYS 61 W CYS 104 1_555 ? ? ? ? ? ? ? 2.031 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LYS 41 C . ? LYS 48 V PRO 42 C ? PRO 49 V 1 -4.26 2 LYS 41 D . ? LYS 48 W PRO 42 D ? PRO 49 W 1 -2.51 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 3 ? C ? 2 ? D ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 HIS C 20 ? ASP C 27 ? HIS V 27 ASP V 34 A 2 CYS C 44 ? GLY C 51 ? CYS V 51 GLY V 58 B 1 ILE C 39 ? LYS C 41 ? ILE V 46 LYS V 48 B 2 LEU C 59 ? ILE C 76 ? LEU V 66 ILE V 83 B 3 GLN C 82 ? PRO C 99 ? GLN V 89 PRO V 106 C 1 HIS D 20 ? ASP D 27 ? HIS W 27 ASP W 34 C 2 CYS D 44 ? GLY D 51 ? CYS W 51 GLY W 58 D 1 ILE D 39 ? LYS D 41 ? ILE W 46 LYS W 48 D 2 GLU D 60 ? ILE D 76 ? GLU W 67 ILE W 83 D 3 GLN D 82 ? ARG D 98 ? GLN W 89 ARG W 105 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE C 22 ? N ILE V 29 O ARG C 49 ? O ARG V 56 B 1 2 N ILE C 39 ? N ILE V 46 O ILE C 76 ? O ILE V 83 B 2 3 N GLU C 60 ? N GLU V 67 O ARG C 98 ? O ARG V 105 C 1 2 N ILE D 22 ? N ILE W 29 O ARG D 49 ? O ARG W 56 D 1 2 N LYS D 41 ? N LYS W 48 O MET D 74 ? O MET W 81 D 2 3 N SER D 67 ? N SER W 74 O GLN D 91 ? O GLN W 98 # _atom_sites.entry_id 3S1K _atom_sites.fract_transf_matrix[1][1] 0.014445 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013744 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013099 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 0 ? ? ? A . n A 1 2 ASP 2 1 ? ? ? A . n A 1 3 ASN 3 2 ? ? ? A . n A 1 4 LYS 4 3 ? ? ? A . n A 1 5 PHE 5 4 ? ? ? A . n A 1 6 ASN 6 5 ? ? ? A . n A 1 7 LYS 7 6 6 LYS LYS A . n A 1 8 GLU 8 7 7 GLU GLU A . n A 1 9 MET 9 8 8 MET MET A . n A 1 10 HIS 10 9 9 HIS HIS A . n A 1 11 ASN 11 10 10 ASN ASN A . n A 1 12 ALA 12 11 11 ALA ALA A . n A 1 13 TYR 13 12 12 TYR TYR A . n A 1 14 ALA 14 13 13 ALA ALA A . n A 1 15 ILE 15 14 14 ILE ILE A . n A 1 16 GLU 16 15 15 GLU GLU A . n A 1 17 ILE 17 16 16 ILE ILE A . n A 1 18 ALA 18 17 17 ALA ALA A . n A 1 19 LEU 19 18 18 LEU LEU A . n A 1 20 LEU 20 19 19 LEU LEU A . n A 1 21 PRO 21 20 20 PRO PRO A . n A 1 22 ASN 22 21 21 ASN ASN A . n A 1 23 LEU 23 22 22 LEU LEU A . n A 1 24 ASN 24 23 23 ASN ASN A . n A 1 25 ASP 25 24 24 ASP ASP A . n A 1 26 GLN 26 25 25 GLN GLN A . n A 1 27 GLN 27 26 26 GLN GLN A . n A 1 28 PHE 28 27 27 PHE PHE A . n A 1 29 HIS 29 28 28 HIS HIS A . n A 1 30 ALA 30 29 29 ALA ALA A . n A 1 31 PHE 31 30 30 PHE PHE A . n A 1 32 ILE 32 31 31 ILE ILE A . n A 1 33 TRP 33 32 32 TRP TRP A . n A 1 34 SER 34 33 33 SER SER A . n A 1 35 LEU 35 34 34 LEU LEU A . n A 1 36 ILE 36 35 35 ILE ILE A . n A 1 37 ASP 37 36 36 ASP ASP A . n A 1 38 ASP 38 37 37 ASP ASP A . n A 1 39 PRO 39 38 38 PRO PRO A . n A 1 40 SER 40 39 39 SER SER A . n A 1 41 GLN 41 40 40 GLN GLN A . n A 1 42 SER 42 41 41 SER SER A . n A 1 43 ALA 43 42 42 ALA ALA A . n A 1 44 ASN 44 43 43 ASN ASN A . n A 1 45 LEU 45 44 44 LEU LEU A . n A 1 46 LEU 46 45 45 LEU LEU A . n A 1 47 ALA 47 46 46 ALA ALA A . n A 1 48 GLU 48 47 47 GLU GLU A . n A 1 49 ALA 49 48 48 ALA ALA A . n A 1 50 LYS 50 49 49 LYS LYS A . n A 1 51 LYS 51 50 50 LYS LYS A . n A 1 52 LEU 52 51 51 LEU LEU A . n A 1 53 ASN 53 52 52 ASN ASN A . n A 1 54 ASP 54 53 53 ASP ASP A . n A 1 55 ALA 55 54 54 ALA ALA A . n A 1 56 GLN 56 55 55 GLN GLN A . n A 1 57 ALA 57 56 56 ALA ALA A . n A 1 58 PRO 58 57 57 PRO PRO A . n A 1 59 LYS 59 58 ? ? ? A . n B 1 1 VAL 1 0 ? ? ? B . n B 1 2 ASP 2 1 ? ? ? B . n B 1 3 ASN 3 2 ? ? ? B . n B 1 4 LYS 4 3 ? ? ? B . n B 1 5 PHE 5 4 ? ? ? B . n B 1 6 ASN 6 5 ? ? ? B . n B 1 7 LYS 7 6 6 LYS LYS B . n B 1 8 GLU 8 7 7 GLU GLU B . n B 1 9 MET 9 8 8 MET MET B . n B 1 10 HIS 10 9 9 HIS HIS B . n B 1 11 ASN 11 10 10 ASN ASN B . n B 1 12 ALA 12 11 11 ALA ALA B . n B 1 13 TYR 13 12 12 TYR TYR B . n B 1 14 ALA 14 13 13 ALA ALA B . n B 1 15 ILE 15 14 14 ILE ILE B . n B 1 16 GLU 16 15 15 GLU GLU B . n B 1 17 ILE 17 16 16 ILE ILE B . n B 1 18 ALA 18 17 17 ALA ALA B . n B 1 19 LEU 19 18 18 LEU LEU B . n B 1 20 LEU 20 19 19 LEU LEU B . n B 1 21 PRO 21 20 20 PRO PRO B . n B 1 22 ASN 22 21 21 ASN ASN B . n B 1 23 LEU 23 22 22 LEU LEU B . n B 1 24 ASN 24 23 23 ASN ASN B . n B 1 25 ASP 25 24 24 ASP ASP B . n B 1 26 GLN 26 25 25 GLN GLN B . n B 1 27 GLN 27 26 26 GLN GLN B . n B 1 28 PHE 28 27 27 PHE PHE B . n B 1 29 HIS 29 28 28 HIS HIS B . n B 1 30 ALA 30 29 29 ALA ALA B . n B 1 31 PHE 31 30 30 PHE PHE B . n B 1 32 ILE 32 31 31 ILE ILE B . n B 1 33 TRP 33 32 32 TRP TRP B . n B 1 34 SER 34 33 33 SER SER B . n B 1 35 LEU 35 34 34 LEU LEU B . n B 1 36 ILE 36 35 35 ILE ILE B . n B 1 37 ASP 37 36 36 ASP ASP B . n B 1 38 ASP 38 37 37 ASP ASP B . n B 1 39 PRO 39 38 38 PRO PRO B . n B 1 40 SER 40 39 39 SER SER B . n B 1 41 GLN 41 40 40 GLN GLN B . n B 1 42 SER 42 41 41 SER SER B . n B 1 43 ALA 43 42 42 ALA ALA B . n B 1 44 ASN 44 43 43 ASN ASN B . n B 1 45 LEU 45 44 44 LEU LEU B . n B 1 46 LEU 46 45 45 LEU LEU B . n B 1 47 ALA 47 46 46 ALA ALA B . n B 1 48 GLU 48 47 47 GLU GLU B . n B 1 49 ALA 49 48 48 ALA ALA B . n B 1 50 LYS 50 49 49 LYS LYS B . n B 1 51 LYS 51 50 50 LYS LYS B . n B 1 52 LEU 52 51 51 LEU LEU B . n B 1 53 ASN 53 52 52 ASN ASN B . n B 1 54 ASP 54 53 53 ASP ASP B . n B 1 55 ALA 55 54 54 ALA ALA B . n B 1 56 GLN 56 55 55 GLN GLN B . n B 1 57 ALA 57 56 56 ALA ALA B . n B 1 58 PRO 58 57 57 PRO PRO B . n B 1 59 LYS 59 58 ? ? ? B . n C 2 1 GLY 1 8 ? ? ? V . n C 2 2 GLN 2 9 ? ? ? V . n C 2 3 ASN 3 10 ? ? ? V . n C 2 4 HIS 4 11 ? ? ? V . n C 2 5 HIS 5 12 ? ? ? V . n C 2 6 GLU 6 13 13 GLU GLU V . n C 2 7 VAL 7 14 14 VAL VAL V . n C 2 8 VAL 8 15 15 VAL VAL V . n C 2 9 LYS 9 16 16 LYS LYS V . n C 2 10 PHE 10 17 17 PHE PHE V . n C 2 11 MET 11 18 18 MET MET V . n C 2 12 ASP 12 19 19 ASP ASP V . n C 2 13 VAL 13 20 20 VAL VAL V . n C 2 14 TYR 14 21 21 TYR TYR V . n C 2 15 GLN 15 22 22 GLN GLN V . n C 2 16 ARG 16 23 23 ARG ARG V . n C 2 17 SER 17 24 24 SER SER V . n C 2 18 TYR 18 25 25 TYR TYR V . n C 2 19 CYS 19 26 26 CYS CYS V . n C 2 20 HIS 20 27 27 HIS HIS V . n C 2 21 PRO 21 28 28 PRO PRO V . n C 2 22 ILE 22 29 29 ILE ILE V . n C 2 23 GLU 23 30 30 GLU GLU V . n C 2 24 THR 24 31 31 THR THR V . n C 2 25 LEU 25 32 32 LEU LEU V . n C 2 26 VAL 26 33 33 VAL VAL V . n C 2 27 ASP 27 34 34 ASP ASP V . n C 2 28 ILE 28 35 35 ILE ILE V . n C 2 29 PHE 29 36 36 PHE PHE V . n C 2 30 GLN 30 37 37 GLN GLN V . n C 2 31 GLU 31 38 38 GLU GLU V . n C 2 32 TYR 32 39 39 TYR TYR V . n C 2 33 PRO 33 40 40 PRO PRO V . n C 2 34 ASP 34 41 41 ASP ASP V . n C 2 35 GLU 35 42 42 GLU GLU V . n C 2 36 ILE 36 43 43 ILE ILE V . n C 2 37 GLU 37 44 44 GLU GLU V . n C 2 38 TYR 38 45 45 TYR TYR V . n C 2 39 ILE 39 46 46 ILE ILE V . n C 2 40 PHE 40 47 47 PHE PHE V . n C 2 41 LYS 41 48 48 LYS LYS V . n C 2 42 PRO 42 49 49 PRO PRO V . n C 2 43 SER 43 50 50 SER SER V . n C 2 44 CYS 44 51 51 CYS CYS V . n C 2 45 VAL 45 52 52 VAL VAL V . n C 2 46 PRO 46 53 53 PRO PRO V . n C 2 47 LEU 47 54 54 LEU LEU V . n C 2 48 MET 48 55 55 MET MET V . n C 2 49 ARG 49 56 56 ARG ARG V . n C 2 50 CYS 50 57 57 CYS CYS V . n C 2 51 GLY 51 58 58 GLY GLY V . n C 2 52 GLY 52 59 59 GLY GLY V . n C 2 53 CYS 53 60 60 CYS CYS V . n C 2 54 CYS 54 61 61 CYS CYS V . n C 2 55 ASN 55 62 62 ASN ASN V . n C 2 56 ASP 56 63 63 ASP ASP V . n C 2 57 GLU 57 64 64 GLU GLU V . n C 2 58 GLY 58 65 65 GLY GLY V . n C 2 59 LEU 59 66 66 LEU LEU V . n C 2 60 GLU 60 67 67 GLU GLU V . n C 2 61 CYS 61 68 68 CYS CYS V . n C 2 62 VAL 62 69 69 VAL VAL V . n C 2 63 PRO 63 70 70 PRO PRO V . n C 2 64 THR 64 71 71 THR THR V . n C 2 65 GLU 65 72 72 GLU GLU V . n C 2 66 GLU 66 73 73 GLU GLU V . n C 2 67 SER 67 74 74 SER SER V . n C 2 68 ASN 68 75 75 ASN ASN V . n C 2 69 ILE 69 76 76 ILE ILE V . n C 2 70 THR 70 77 77 THR THR V . n C 2 71 MET 71 78 78 MET MET V . n C 2 72 GLN 72 79 79 GLN GLN V . n C 2 73 ILE 73 80 80 ILE ILE V . n C 2 74 MET 74 81 81 MET MET V . n C 2 75 ARG 75 82 82 ARG ARG V . n C 2 76 ILE 76 83 83 ILE ILE V . n C 2 77 LYS 77 84 84 LYS LYS V . n C 2 78 PRO 78 85 85 PRO PRO V . n C 2 79 HIS 79 86 86 HIS HIS V . n C 2 80 GLN 80 87 87 GLN GLN V . n C 2 81 GLY 81 88 88 GLY GLY V . n C 2 82 GLN 82 89 89 GLN GLN V . n C 2 83 HIS 83 90 90 HIS HIS V . n C 2 84 ILE 84 91 91 ILE ILE V . n C 2 85 GLY 85 92 92 GLY GLY V . n C 2 86 GLU 86 93 93 GLU GLU V . n C 2 87 MET 87 94 94 MET MET V . n C 2 88 SER 88 95 95 SER SER V . n C 2 89 PHE 89 96 96 PHE PHE V . n C 2 90 LEU 90 97 97 LEU LEU V . n C 2 91 GLN 91 98 98 GLN GLN V . n C 2 92 HIS 92 99 99 HIS HIS V . n C 2 93 ASN 93 100 100 ASN ASN V . n C 2 94 LYS 94 101 101 LYS LYS V . n C 2 95 CYS 95 102 102 CYS CYS V . n C 2 96 GLU 96 103 103 GLU GLU V . n C 2 97 CYS 97 104 104 CYS CYS V . n C 2 98 ARG 98 105 105 ARG ARG V . n C 2 99 PRO 99 106 106 PRO PRO V . n C 2 100 LYS 100 107 107 LYS LYS V . n C 2 101 LYS 101 108 ? ? ? V . n C 2 102 ASP 102 109 ? ? ? V . n D 2 1 GLY 1 8 ? ? ? W . n D 2 2 GLN 2 9 ? ? ? W . n D 2 3 ASN 3 10 ? ? ? W . n D 2 4 HIS 4 11 ? ? ? W . n D 2 5 HIS 5 12 ? ? ? W . n D 2 6 GLU 6 13 ? ? ? W . n D 2 7 VAL 7 14 14 VAL VAL W . n D 2 8 VAL 8 15 15 VAL VAL W . n D 2 9 LYS 9 16 16 LYS LYS W . n D 2 10 PHE 10 17 17 PHE PHE W . n D 2 11 MET 11 18 18 MET MET W . n D 2 12 ASP 12 19 19 ASP ASP W . n D 2 13 VAL 13 20 20 VAL VAL W . n D 2 14 TYR 14 21 21 TYR TYR W . n D 2 15 GLN 15 22 22 GLN GLN W . n D 2 16 ARG 16 23 23 ARG ARG W . n D 2 17 SER 17 24 24 SER SER W . n D 2 18 TYR 18 25 25 TYR TYR W . n D 2 19 CYS 19 26 26 CYS CYS W . n D 2 20 HIS 20 27 27 HIS HIS W . n D 2 21 PRO 21 28 28 PRO PRO W . n D 2 22 ILE 22 29 29 ILE ILE W . n D 2 23 GLU 23 30 30 GLU GLU W . n D 2 24 THR 24 31 31 THR THR W . n D 2 25 LEU 25 32 32 LEU LEU W . n D 2 26 VAL 26 33 33 VAL VAL W . n D 2 27 ASP 27 34 34 ASP ASP W . n D 2 28 ILE 28 35 35 ILE ILE W . n D 2 29 PHE 29 36 36 PHE PHE W . n D 2 30 GLN 30 37 37 GLN GLN W . n D 2 31 GLU 31 38 38 GLU GLU W . n D 2 32 TYR 32 39 39 TYR TYR W . n D 2 33 PRO 33 40 40 PRO PRO W . n D 2 34 ASP 34 41 41 ASP ASP W . n D 2 35 GLU 35 42 42 GLU GLU W . n D 2 36 ILE 36 43 43 ILE ILE W . n D 2 37 GLU 37 44 44 GLU GLU W . n D 2 38 TYR 38 45 45 TYR TYR W . n D 2 39 ILE 39 46 46 ILE ILE W . n D 2 40 PHE 40 47 47 PHE PHE W . n D 2 41 LYS 41 48 48 LYS LYS W . n D 2 42 PRO 42 49 49 PRO PRO W . n D 2 43 SER 43 50 50 SER SER W . n D 2 44 CYS 44 51 51 CYS CYS W . n D 2 45 VAL 45 52 52 VAL VAL W . n D 2 46 PRO 46 53 53 PRO PRO W . n D 2 47 LEU 47 54 54 LEU LEU W . n D 2 48 MET 48 55 55 MET MET W . n D 2 49 ARG 49 56 56 ARG ARG W . n D 2 50 CYS 50 57 57 CYS CYS W . n D 2 51 GLY 51 58 58 GLY GLY W . n D 2 52 GLY 52 59 59 GLY GLY W . n D 2 53 CYS 53 60 60 CYS CYS W . n D 2 54 CYS 54 61 61 CYS CYS W . n D 2 55 ASN 55 62 62 ASN ASN W . n D 2 56 ASP 56 63 63 ASP ASP W . n D 2 57 GLU 57 64 64 GLU GLU W . n D 2 58 GLY 58 65 65 GLY GLY W . n D 2 59 LEU 59 66 66 LEU LEU W . n D 2 60 GLU 60 67 67 GLU GLU W . n D 2 61 CYS 61 68 68 CYS CYS W . n D 2 62 VAL 62 69 69 VAL VAL W . n D 2 63 PRO 63 70 70 PRO PRO W . n D 2 64 THR 64 71 71 THR THR W . n D 2 65 GLU 65 72 72 GLU GLU W . n D 2 66 GLU 66 73 73 GLU GLU W . n D 2 67 SER 67 74 74 SER SER W . n D 2 68 ASN 68 75 75 ASN ASN W . n D 2 69 ILE 69 76 76 ILE ILE W . n D 2 70 THR 70 77 77 THR THR W . n D 2 71 MET 71 78 78 MET MET W . n D 2 72 GLN 72 79 79 GLN GLN W . n D 2 73 ILE 73 80 80 ILE ILE W . n D 2 74 MET 74 81 81 MET MET W . n D 2 75 ARG 75 82 82 ARG ARG W . n D 2 76 ILE 76 83 83 ILE ILE W . n D 2 77 LYS 77 84 84 LYS LYS W . n D 2 78 PRO 78 85 85 PRO PRO W . n D 2 79 HIS 79 86 86 HIS HIS W . n D 2 80 GLN 80 87 87 GLN GLN W . n D 2 81 GLY 81 88 88 GLY GLY W . n D 2 82 GLN 82 89 89 GLN GLN W . n D 2 83 HIS 83 90 90 HIS HIS W . n D 2 84 ILE 84 91 91 ILE ILE W . n D 2 85 GLY 85 92 92 GLY GLY W . n D 2 86 GLU 86 93 93 GLU GLU W . n D 2 87 MET 87 94 94 MET MET W . n D 2 88 SER 88 95 95 SER SER W . n D 2 89 PHE 89 96 96 PHE PHE W . n D 2 90 LEU 90 97 97 LEU LEU W . n D 2 91 GLN 91 98 98 GLN GLN W . n D 2 92 HIS 92 99 99 HIS HIS W . n D 2 93 ASN 93 100 100 ASN ASN W . n D 2 94 LYS 94 101 101 LYS LYS W . n D 2 95 CYS 95 102 102 CYS CYS W . n D 2 96 GLU 96 103 103 GLU GLU W . n D 2 97 CYS 97 104 104 CYS CYS W . n D 2 98 ARG 98 105 105 ARG ARG W . n D 2 99 PRO 99 106 106 PRO PRO W . n D 2 100 LYS 100 107 ? ? ? W . n D 2 101 LYS 101 108 ? ? ? W . n D 2 102 ASP 102 109 ? ? ? W . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5730 ? 1 MORE -47 ? 1 'SSA (A^2)' 15080 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2011-08-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -11.2979 -38.5589 -7.4930 1.2482 0.1921 0.5348 0.1135 0.1958 -0.1011 3.2156 4.1031 3.4904 2.4133 -0.6997 0.4050 0.4567 -0.5755 -0.3387 -0.1322 -0.7571 -0.1769 -0.0559 0.8544 0.4634 'X-RAY DIFFRACTION' 2 ? refined -14.9533 -37.6830 1.7290 1.0754 0.3441 0.6970 0.0541 0.1531 0.0191 7.0742 4.3749 4.1374 0.7901 -0.7836 1.3097 0.1869 -0.4935 -0.1005 -0.7936 -0.7620 -0.0644 0.5362 1.6293 0.2646 'X-RAY DIFFRACTION' 3 ? refined -13.2330 -46.9787 -3.6233 1.5751 0.3888 0.7974 0.1430 0.1698 0.0323 6.5687 4.7654 4.2825 1.0032 0.7473 0.6125 -0.1905 0.1220 -0.2138 0.5485 -1.5005 -0.2118 0.0858 1.0681 0.4817 'X-RAY DIFFRACTION' 4 ? refined -12.7717 9.0830 18.9883 0.4408 0.1661 0.2201 -0.0677 -0.0020 -0.0030 4.1250 5.7524 2.3226 -2.4752 -1.1873 0.1909 -0.1446 -0.0039 -0.0562 -0.0209 0.3236 -0.4041 -0.2581 -0.0200 0.2052 'X-RAY DIFFRACTION' 5 ? refined -12.2876 8.5498 9.0301 0.6530 0.2751 0.2186 -0.0847 0.0169 0.0257 6.1530 5.1287 3.8200 -1.5620 0.0897 1.7523 0.3976 0.1782 -0.0856 -0.5839 0.3372 -0.3263 -0.6732 -0.0706 -0.3762 'X-RAY DIFFRACTION' 6 ? refined -10.8715 17.5202 15.3876 0.6562 0.1813 0.3945 -0.0596 0.1349 0.0581 5.4575 4.1714 3.3804 -1.8218 -0.1568 0.6031 0.2166 -0.0202 -0.2692 0.0761 0.6313 -0.3572 -0.2360 -0.6353 0.1664 'X-RAY DIFFRACTION' 7 ? refined -17.4804 -8.6034 6.0645 0.4277 0.1581 0.2270 -0.0196 -0.0148 0.0350 2.0896 2.1339 6.4502 0.2734 0.4420 2.6777 -0.1716 0.2061 0.0834 -0.1678 -0.1862 -0.0813 -0.0772 -0.0993 -0.1112 'X-RAY DIFFRACTION' 8 ? refined -28.3557 -25.0762 -15.3196 1.1111 -0.1504 0.9819 -0.0301 -0.4276 -0.0968 4.1442 2.4116 2.1982 3.0169 1.8133 0.7664 -0.1148 -0.0218 -0.3388 1.1124 -1.5279 1.2965 -1.7435 1.1644 -0.1362 'X-RAY DIFFRACTION' 9 ? refined -21.4680 -12.5731 -1.7789 0.5110 0.1981 0.1776 -0.1166 0.1086 0.1344 1.5315 5.8521 4.2658 -0.2652 1.2361 0.4462 0.0346 0.0361 0.1124 -0.1545 -0.1364 0.0986 -0.2206 0.0734 -1.1288 'X-RAY DIFFRACTION' 10 ? refined -17.6850 -14.3148 -9.3731 0.5569 0.2006 0.0380 0.0132 0.0116 0.1429 1.7197 3.9529 3.0473 -0.9177 0.2452 -0.8636 -0.0267 -0.0808 0.1066 0.6972 -0.4002 0.1612 -0.7144 0.0613 -0.1709 'X-RAY DIFFRACTION' 11 ? refined -19.8212 -17.4925 -10.3621 0.4978 0.3608 0.2415 -0.0438 0.0395 0.0557 3.2980 4.9518 4.7353 -1.2938 0.7278 -0.4108 0.2210 -0.1009 -0.0098 0.3041 -0.5740 0.1919 -0.4167 0.7215 -0.0705 'X-RAY DIFFRACTION' 12 ? refined -18.2667 -19.8636 3.4202 0.6409 0.1886 0.4034 0.0060 0.0610 0.0121 0.3941 2.9507 4.4183 -0.8709 -1.1959 2.4739 0.0110 -0.3119 0.2807 -0.0720 -0.4562 0.0802 0.2314 0.6183 0.0604 'X-RAY DIFFRACTION' 13 ? refined -34.2440 -1.2555 17.8129 0.5402 0.4143 0.5429 0.0986 -0.1549 -0.1086 4.1010 3.6795 0.6129 -1.2482 -0.5650 -1.1444 -0.7636 -0.6178 0.4129 -1.4681 0.5899 1.2269 0.9605 0.0141 -1.1343 'X-RAY DIFFRACTION' 14 ? refined -24.2203 -15.7497 8.2828 0.6915 0.2206 0.2778 -0.1761 0.1076 0.0268 0.6580 5.7952 3.6663 -1.6454 -1.0336 3.0465 -0.1196 -0.5546 0.3899 0.1305 -0.3525 0.5748 0.2793 0.9227 -0.6194 'X-RAY DIFFRACTION' 15 ? refined -23.3187 -12.3769 17.6445 0.7546 0.1919 0.2680 -0.0989 0.0486 0.0266 0.4823 6.1100 2.6612 0.6455 -0.1132 3.1517 0.1434 -0.6280 0.4089 0.0407 -0.2501 0.0057 1.3629 1.1763 -0.3530 'X-RAY DIFFRACTION' 16 ? refined -25.0990 -9.1325 17.5058 0.6157 0.2167 -0.1322 -0.2270 0.0194 0.1454 1.3461 3.5221 4.4330 0.4828 0.4394 4.0530 -0.6459 -0.7112 -0.0142 -0.9253 -0.5255 0.5517 -0.3784 0.7567 -0.3790 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 0 ;chain 'A' and (resseq 6:23) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 0 A 0 ;chain 'A' and (resseq 24:37) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 0 A 0 ;chain 'A' and (resseq 38:57) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 B 0 B 0 ;chain 'B' and (resseq 6:23) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 B 0 B 0 ;chain 'B' and (resseq 24:37) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 B 0 B 0 ;chain 'B' and (resseq 38:57) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 V 0 V 0 ;chain 'V' and (resseq 13:38) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 8 8 V 0 V 0 ;chain 'V' and (resseq 39:45) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 9 9 V 0 V 0 ;chain 'V' and (resseq 46:65) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 10 10 V 0 V 0 ;chain 'V' and (resseq 66:83) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 11 11 V 0 V 0 ;chain 'V' and (resseq 84:107) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 12 12 W 0 W 0 ;chain 'W' and (resseq 14:38) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 13 13 W 0 W 0 ;chain 'W' and (resseq 39:45) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 14 14 W 0 W 0 ;chain 'W' and (resseq 46:66) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 15 15 W 0 W 0 ;chain 'W' and (resseq 67:83) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 16 16 W 0 W 0 ;chain 'W' and (resseq 84:106) ; ? ? ? ? ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALA 3.2.25 21/9/2006 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 3 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 PHENIX dev_751 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 SG W CYS 26 ? ? SG W CYS 68 ? ? 1.40 2 1 SG V CYS 26 ? ? SG V CYS 68 ? ? 1.53 3 1 O V HOH 114 ? ? O V HOH 120 ? ? 2.03 4 1 N W CYS 104 ? ? O W HOH 115 ? ? 2.07 5 1 O A PRO 38 ? ? OG A SER 41 ? ? 2.16 6 1 O B PRO 38 ? ? OG B SER 41 ? ? 2.17 7 1 O W HOH 1 ? ? O W HOH 3 ? ? 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB W ASP 63 ? ? CA W ASP 63 ? ? C W ASP 63 ? ? 135.38 110.40 24.98 2.00 N 2 1 N W ASP 63 ? ? CA W ASP 63 ? ? C W ASP 63 ? ? 90.74 111.00 -20.26 2.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS V 86 ? ? 67.48 -4.57 2 1 GLN W 87 ? ? -158.33 63.16 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 0 ? A VAL 1 2 1 Y 1 A ASP 1 ? A ASP 2 3 1 Y 1 A ASN 2 ? A ASN 3 4 1 Y 1 A LYS 3 ? A LYS 4 5 1 Y 1 A PHE 4 ? A PHE 5 6 1 Y 1 A ASN 5 ? A ASN 6 7 1 Y 1 A LYS 58 ? A LYS 59 8 1 Y 1 B VAL 0 ? B VAL 1 9 1 Y 1 B ASP 1 ? B ASP 2 10 1 Y 1 B ASN 2 ? B ASN 3 11 1 Y 1 B LYS 3 ? B LYS 4 12 1 Y 1 B PHE 4 ? B PHE 5 13 1 Y 1 B ASN 5 ? B ASN 6 14 1 Y 1 B LYS 58 ? B LYS 59 15 1 Y 1 V GLY 8 ? C GLY 1 16 1 Y 1 V GLN 9 ? C GLN 2 17 1 Y 1 V ASN 10 ? C ASN 3 18 1 Y 1 V HIS 11 ? C HIS 4 19 1 Y 1 V HIS 12 ? C HIS 5 20 1 Y 1 V LYS 108 ? C LYS 101 21 1 Y 1 V ASP 109 ? C ASP 102 22 1 Y 1 W GLY 8 ? D GLY 1 23 1 Y 1 W GLN 9 ? D GLN 2 24 1 Y 1 W ASN 10 ? D ASN 3 25 1 Y 1 W HIS 11 ? D HIS 4 26 1 Y 1 W HIS 12 ? D HIS 5 27 1 Y 1 W GLU 13 ? D GLU 6 28 1 Y 1 W LYS 107 ? D LYS 100 29 1 Y 1 W LYS 108 ? D LYS 101 30 1 Y 1 W ASP 109 ? D ASP 102 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 59 22 HOH HOH A . F 3 HOH 1 59 5 HOH HOH B . F 3 HOH 2 60 17 HOH HOH B . F 3 HOH 3 61 18 HOH HOH B . F 3 HOH 4 62 21 HOH HOH B . F 3 HOH 5 63 23 HOH HOH B . F 3 HOH 6 64 28 HOH HOH B . F 3 HOH 7 65 35 HOH HOH B . G 3 HOH 1 2 2 HOH HOH V . G 3 HOH 2 6 6 HOH HOH V . G 3 HOH 3 7 7 HOH HOH V . G 3 HOH 4 110 9 HOH HOH V . G 3 HOH 5 111 10 HOH HOH V . G 3 HOH 6 112 13 HOH HOH V . G 3 HOH 7 113 16 HOH HOH V . G 3 HOH 8 114 19 HOH HOH V . G 3 HOH 9 115 30 HOH HOH V . G 3 HOH 10 116 31 HOH HOH V . G 3 HOH 11 117 32 HOH HOH V . G 3 HOH 12 118 33 HOH HOH V . G 3 HOH 13 119 36 HOH HOH V . G 3 HOH 14 120 38 HOH HOH V . G 3 HOH 15 121 39 HOH HOH V . H 3 HOH 1 1 1 HOH HOH W . H 3 HOH 2 3 3 HOH HOH W . H 3 HOH 3 4 4 HOH HOH W . H 3 HOH 4 110 8 HOH HOH W . H 3 HOH 5 111 11 HOH HOH W . H 3 HOH 6 112 12 HOH HOH W . H 3 HOH 7 113 20 HOH HOH W . H 3 HOH 8 114 24 HOH HOH W . H 3 HOH 9 115 25 HOH HOH W . H 3 HOH 10 116 26 HOH HOH W . H 3 HOH 11 117 27 HOH HOH W . H 3 HOH 12 118 29 HOH HOH W . H 3 HOH 13 119 34 HOH HOH W . H 3 HOH 14 120 37 HOH HOH W . #