HEADER HYDROLASE/HYDROLASE INHIBITOR 16-MAY-11 3S2L TITLE CRYSTAL STRUCTURE OF DIPEPTIDASE FROM STREPTOMYCES COELICOLOR TITLE 2 COMPLEXED WITH PHOSPHINATE PSEUDODIPEPTIDE L-LEU-D-GLU COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR; SOURCE 3 ORGANISM_TAXID: 1902; SOURCE 4 GENE: SCO3058, SCBAC19G2.13C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS (BETA-ALPHA)8 BARREL, DIPEPTIDASE, PHOSPHINATE PSEUDODIPEPTIDE, KEYWDS 2 HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.A.FEDOROV,E.V.FEDOROV,J.CUMMINGS,F.M.RAUSHEL,S.C.ALMO REVDAT 2 13-SEP-23 3S2L 1 REMARK LINK REVDAT 1 22-JUN-11 3S2L 0 JRNL AUTH A.A.FEDOROV,E.V.FEDOROV,J.CUMMINGS,F.M.RAUSHEL,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF DIPEPTIDASE FROM STREPTOMYCES JRNL TITL 2 COELICOLOR COMPLEXED WITH PHOSPHINATE PSEUDODIPEPTIDE JRNL TITL 3 L-LEU-D-GLU JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 107396 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 5358 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.5734 - 4.3460 0.99 3727 192 0.1754 0.1804 REMARK 3 2 4.3460 - 3.4505 1.00 3613 213 0.1500 0.1696 REMARK 3 3 3.4505 - 3.0146 1.00 3600 198 0.1592 0.1753 REMARK 3 4 3.0146 - 2.7391 1.00 3560 202 0.1627 0.1829 REMARK 3 5 2.7391 - 2.5428 1.00 3603 158 0.1556 0.1764 REMARK 3 6 2.5428 - 2.3929 1.00 3583 186 0.1511 0.1755 REMARK 3 7 2.3929 - 2.2731 1.00 3525 221 0.1457 0.1451 REMARK 3 8 2.2731 - 2.1742 1.00 3548 196 0.1519 0.1854 REMARK 3 9 2.1742 - 2.0905 1.00 3545 184 0.1558 0.1778 REMARK 3 10 2.0905 - 2.0183 1.00 3495 182 0.1561 0.1575 REMARK 3 11 2.0183 - 1.9552 1.00 3567 183 0.1603 0.1795 REMARK 3 12 1.9552 - 1.8994 1.00 3527 184 0.1530 0.1679 REMARK 3 13 1.8994 - 1.8494 1.00 3520 185 0.1525 0.1753 REMARK 3 14 1.8494 - 1.8042 1.00 3537 188 0.1510 0.1600 REMARK 3 15 1.8042 - 1.7632 1.00 3537 160 0.1452 0.1669 REMARK 3 16 1.7632 - 1.7257 1.00 3542 191 0.1436 0.1615 REMARK 3 17 1.7257 - 1.6912 1.00 3531 183 0.1483 0.1511 REMARK 3 18 1.6912 - 1.6593 1.00 3511 166 0.1571 0.1844 REMARK 3 19 1.6593 - 1.6296 1.00 3535 183 0.1622 0.1638 REMARK 3 20 1.6296 - 1.6020 1.00 3553 168 0.1662 0.1696 REMARK 3 21 1.6020 - 1.5762 1.00 3528 172 0.1758 0.2109 REMARK 3 22 1.5762 - 1.5519 1.00 3504 168 0.1938 0.2089 REMARK 3 23 1.5519 - 1.5291 0.99 3452 215 0.2132 0.2073 REMARK 3 24 1.5291 - 1.5076 0.97 3383 197 0.2314 0.2556 REMARK 3 25 1.5076 - 1.4872 0.95 3327 172 0.2532 0.2583 REMARK 3 26 1.4872 - 1.4679 0.90 3210 147 0.2781 0.3208 REMARK 3 27 1.4679 - 1.4495 0.85 2980 154 0.2955 0.2903 REMARK 3 28 1.4495 - 1.4321 0.78 2748 158 0.3385 0.3354 REMARK 3 29 1.4321 - 1.4154 0.71 2502 126 0.3606 0.3483 REMARK 3 30 1.4154 - 1.3995 0.65 2245 126 0.3896 0.3839 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.40 REMARK 3 SHRINKAGE RADIUS : 0.04 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 64.78 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.43460 REMARK 3 B22 (A**2) : -1.43460 REMARK 3 B33 (A**2) : 2.86930 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3135 REMARK 3 ANGLE : 1.070 4244 REMARK 3 CHIRALITY : 0.070 471 REMARK 3 PLANARITY : 0.005 566 REMARK 3 DIHEDRAL : 11.800 1153 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -31.7688 -10.5318 1.4038 REMARK 3 T TENSOR REMARK 3 T11: 0.0928 T22: 0.1034 REMARK 3 T33: 0.1033 T12: -0.0008 REMARK 3 T13: 0.0069 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.2640 L22: 0.1714 REMARK 3 L33: 0.3169 L12: -0.0440 REMARK 3 L13: -0.0613 L23: -0.0497 REMARK 3 S TENSOR REMARK 3 S11: -0.0088 S12: -0.0176 S13: 0.0103 REMARK 3 S21: 0.0159 S22: 0.0213 S23: 0.0271 REMARK 3 S31: 0.0041 S32: -0.0286 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3S2L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065681. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 107396 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.399 REMARK 200 RESOLUTION RANGE LOW (A) : 35.562 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 3K5X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% POLYACRYLIC ACID, 0.1M HEPES, REMARK 280 0.02M MAGNESIUM CHLORIDE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.92000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.84000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 69.84000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.92000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 461 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 986 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 394 REMARK 465 ALA A 395 REMARK 465 GLU A 396 REMARK 465 GLN A 397 REMARK 465 PRO A 398 REMARK 465 GLU A 399 REMARK 465 GLY A 400 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 20 109.07 -166.30 REMARK 500 HIS A 150 -133.19 -101.25 REMARK 500 HIS A 191 -25.67 70.19 REMARK 500 HIS A 212 79.41 -160.03 REMARK 500 SER A 214 -156.23 -115.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 20 NE2 REMARK 620 2 ASP A 22 OD2 94.8 REMARK 620 3 GLU A 123 OE1 86.3 147.1 REMARK 620 4 LDE A 401 O31 104.3 91.1 120.6 REMARK 620 5 LDE A 401 N1 169.3 90.2 84.4 85.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 123 OE2 REMARK 620 2 HIS A 191 NE2 90.5 REMARK 620 3 HIS A 212 NE2 92.0 111.2 REMARK 620 4 LDE A 401 O32 93.1 94.1 154.1 REMARK 620 5 LDE A 401 O62 172.3 96.1 89.3 82.6 REMARK 620 6 LDE A 401 O31 92.8 157.0 91.4 63.0 79.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 414 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3K5X RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 3S2J RELATED DB: PDB REMARK 900 RELATED ID: 3S2M RELATED DB: PDB REMARK 900 RELATED ID: 3S2N RELATED DB: PDB DBREF 3S2L A 1 400 UNP Q93J45 Q93J45_STRCO 1 400 SEQRES 1 A 400 MET THR SER LEU GLU LYS ALA ARG GLU LEU LEU ARG GLU SEQRES 2 A 400 PHE PRO VAL VAL ASP GLY HIS ASN ASP LEU PRO TRP ALA SEQRES 3 A 400 LEU ARG GLU GLN VAL ARG TYR ASP LEU ASP ALA ARG ASP SEQRES 4 A 400 ILE ALA ALA ASP GLN SER ALA HIS LEU HIS THR ASP LEU SEQRES 5 A 400 ALA ARG LEU ARG SER GLY GLY VAL GLY ALA GLN TYR TRP SEQRES 6 A 400 SER VAL TYR VAL ARG SER ASP LEU PRO GLY ALA VAL THR SEQRES 7 A 400 ALA THR LEU GLU GLN ILE ASP CYS VAL ARG ARG LEU ILE SEQRES 8 A 400 ASP ARG HIS PRO GLY GLU LEU ARG ALA ALA LEU THR ALA SEQRES 9 A 400 ALA ASP MET GLU ALA ALA ARG ALA GLU GLY ARG ILE ALA SEQRES 10 A 400 SER LEU MET GLY ALA GLU GLY GLY HIS SER ILE ASP ASN SEQRES 11 A 400 SER LEU ALA THR LEU ARG ALA LEU TYR ALA LEU GLY VAL SEQRES 12 A 400 ARG TYR MET THR LEU THR HIS ASN ASP ASN ASN ALA TRP SEQRES 13 A 400 ALA ASP SER ALA THR ASP GLU PRO GLY VAL GLY GLY LEU SEQRES 14 A 400 SER ALA PHE GLY ARG GLU VAL VAL ARG GLU MET ASN ARG SEQRES 15 A 400 GLU GLY MET LEU VAL ASP LEU SER HIS VAL ALA ALA THR SEQRES 16 A 400 THR MET ARG ASP ALA LEU ASP THR SER THR ALA PRO VAL SEQRES 17 A 400 ILE PHE SER HIS SER SER SER ARG ALA VAL CYS ASP HIS SEQRES 18 A 400 PRO ARG ASN ILE PRO ASP ASP VAL LEU GLU ARG LEU SER SEQRES 19 A 400 ALA ASN GLY GLY MET ALA MET VAL THR PHE VAL PRO LYS SEQRES 20 A 400 PHE VAL LEU GLN ALA ALA VAL ASP TRP THR ALA GLU ALA SEQRES 21 A 400 ASP ASP ASN MET ARG ALA HIS GLY PHE HIS HIS LEU ASP SEQRES 22 A 400 SER SER PRO GLU ALA MET LYS VAL HIS ALA ALA PHE GLU SEQRES 23 A 400 GLU ARG VAL PRO ARG PRO VAL ALA THR VAL SER THR VAL SEQRES 24 A 400 ALA ASP HIS LEU ASP HIS MET ARG GLU VAL ALA GLY VAL SEQRES 25 A 400 ASP HIS LEU GLY ILE GLY GLY ASP TYR ASP GLY THR PRO SEQRES 26 A 400 PHE THR PRO ASP GLY LEU GLY ASP VAL SER GLY TYR PRO SEQRES 27 A 400 ASN LEU ILE ALA GLU LEU LEU ASP ARG GLY TRP SER GLN SEQRES 28 A 400 SER ASP LEU ALA LYS LEU THR TRP LYS ASN ALA VAL ARG SEQRES 29 A 400 VAL LEU ASP ALA ALA GLU ASP VAL SER ARG GLY LEU ARG SEQRES 30 A 400 ALA ALA ARG GLY PRO SER ASN ALA THR ILE GLU GLN LEU SEQRES 31 A 400 ASP GLY THR ALA ALA GLU GLN PRO GLU GLY HET LDE A 401 19 HET ZN A 402 1 HET ZN A 403 1 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET EDO A 409 4 HET EDO A 410 4 HET EDO A 411 4 HET EDO A 412 4 HET EDO A 413 4 HET EDO A 414 4 HETNAM LDE (2R)-2-{[(S)-[(1R)-1-AMINO-3-METHYLBUTYL](HYDROXY) HETNAM 2 LDE PHOSPHORYL]METHYL}PENTANEDIOIC ACID HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN LDE L-LEU-D-GLU PHOSPHINATE PSEUDODIPEPTIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 LDE C11 H22 N O6 P FORMUL 3 ZN 2(ZN 2+) FORMUL 5 EDO 11(C2 H6 O2) FORMUL 16 HOH *578(H2 O) HELIX 1 1 THR A 2 PHE A 14 1 13 HELIX 2 2 ASP A 22 ARG A 32 1 11 HELIX 3 3 ASP A 34 ASP A 39 5 6 HELIX 4 4 ASP A 51 GLY A 59 1 9 HELIX 5 5 GLY A 75 HIS A 94 1 20 HELIX 6 6 THR A 103 GLY A 114 1 12 HELIX 7 7 GLY A 125 ASP A 129 5 5 HELIX 8 8 SER A 131 GLY A 142 1 12 HELIX 9 9 SER A 170 GLY A 184 1 15 HELIX 10 10 ALA A 193 SER A 204 1 12 HELIX 11 11 PRO A 226 ARG A 232 1 7 HELIX 12 12 ARG A 232 GLY A 237 1 6 HELIX 13 13 VAL A 245 LEU A 250 1 6 HELIX 14 14 LEU A 250 HIS A 267 1 18 HELIX 15 15 SER A 275 VAL A 289 1 15 HELIX 16 16 THR A 295 GLY A 311 1 17 HELIX 17 17 GLY A 336 ARG A 347 1 12 HELIX 18 18 SER A 350 TRP A 359 1 10 HELIX 19 19 TRP A 359 ARG A 380 1 22 HELIX 20 20 THR A 386 GLY A 392 1 7 SHEET 1 A 4 VAL A 16 ASN A 21 0 SHEET 2 A 4 VAL A 60 SER A 66 1 O SER A 66 N ASN A 21 SHEET 3 A 4 ILE A 116 GLU A 123 1 O ALA A 117 N GLN A 63 SHEET 4 A 4 LEU A 98 ALA A 100 1 N ARG A 99 O SER A 118 SHEET 1 B 5 VAL A 16 ASN A 21 0 SHEET 2 B 5 VAL A 60 SER A 66 1 O SER A 66 N ASN A 21 SHEET 3 B 5 ILE A 116 GLU A 123 1 O ALA A 117 N GLN A 63 SHEET 4 B 5 VAL A 143 THR A 147 1 O ARG A 144 N MET A 120 SHEET 5 B 5 LEU A 186 ASP A 188 1 O LEU A 186 N ARG A 144 SHEET 1 C 3 ILE A 209 PHE A 210 0 SHEET 2 C 3 MET A 239 VAL A 242 1 O MET A 241 N PHE A 210 SHEET 3 C 3 LEU A 315 ILE A 317 1 O GLY A 316 N ALA A 240 LINK NE2 HIS A 20 ZN ZN A 402 1555 1555 2.12 LINK OD2 ASP A 22 ZN ZN A 402 1555 1555 2.03 LINK OE1 GLU A 123 ZN ZN A 402 1555 1555 2.11 LINK OE2 GLU A 123 ZN ZN A 403 1555 1555 2.05 LINK NE2 HIS A 191 ZN ZN A 403 1555 1555 2.06 LINK NE2 HIS A 212 ZN ZN A 403 1555 1555 2.09 LINK O31 LDE A 401 ZN ZN A 402 1555 1555 2.08 LINK N1 LDE A 401 ZN ZN A 402 1555 1555 2.21 LINK O32 LDE A 401 ZN ZN A 403 1555 1555 2.15 LINK O62 LDE A 401 ZN ZN A 403 1555 1555 2.20 LINK O31 LDE A 401 ZN ZN A 403 1555 1555 2.60 SITE 1 AC1 17 HIS A 20 ASP A 22 TRP A 25 TYR A 68 SITE 2 AC1 17 GLU A 123 HIS A 150 HIS A 191 HIS A 212 SITE 3 AC1 17 ARG A 223 LYS A 247 PHE A 248 ASP A 320 SITE 4 AC1 17 GLY A 323 ZN A 402 ZN A 403 HOH A 715 SITE 5 AC1 17 HOH A 736 SITE 1 AC2 5 HIS A 20 ASP A 22 GLU A 123 LDE A 401 SITE 2 AC2 5 ZN A 403 SITE 1 AC3 5 GLU A 123 HIS A 191 HIS A 212 LDE A 401 SITE 2 AC3 5 ZN A 402 SITE 1 AC4 7 HIS A 126 ASN A 130 ASN A 154 ALA A 155 SITE 2 AC4 7 HOH A 562 HOH A 587 HOH A 793 SITE 1 AC5 8 PHE A 14 SER A 352 ALA A 355 LYS A 360 SITE 2 AC5 8 ASP A 367 ARG A 374 HOH A 645 HOH A 676 SITE 1 AC6 7 HIS A 47 HIS A 49 ASP A 322 THR A 324 SITE 2 AC6 7 PRO A 325 HOH A 425 HOH A 811 SITE 1 AC7 6 VAL A 218 VAL A 249 LEU A 250 GLN A 251 SITE 2 AC7 6 ASP A 301 HOH A 529 SITE 1 AC8 4 SER A 45 HIS A 47 HIS A 49 HOH A 696 SITE 1 AC9 6 ARG A 136 ARG A 182 GLU A 183 HOH A 800 SITE 2 AC9 6 HOH A 819 HOH A 979 SITE 1 BC1 5 ASP A 313 HIS A 314 ARG A 364 HOH A 516 SITE 2 BC1 5 HOH A 551 SITE 1 BC2 6 ARG A 88 ALA A 100 MET A 120 LEU A 141 SITE 2 BC2 6 HOH A 707 HOH A 861 SITE 1 BC3 6 TYR A 33 ASP A 34 LEU A 35 ASP A 36 SITE 2 BC3 6 ARG A 89 ASN A 384 SITE 1 BC4 7 LYS A 356 ARG A 364 ALA A 368 HOH A 516 SITE 2 BC4 7 HOH A 639 HOH A 685 HOH A 719 SITE 1 BC5 5 TRP A 25 ARG A 28 GLU A 29 HOH A 668 SITE 2 BC5 5 HOH A 910 CRYST1 96.871 96.871 104.760 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010323 0.005960 0.000000 0.00000 SCALE2 0.000000 0.011920 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009546 0.00000