HEADER IMMUNE SYSTEM/TRANSFERASE 17-MAY-11 3S36 TITLE STRUCTURAL BASIS FOR THE FUNCTION OF TWO ANTI-VEGF RECEPTOR ANTIBODIES COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1121B LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 1121B HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2; COMPND 11 CHAIN: X; COMPND 12 FRAGMENT: DOMAIN 3 OF VEGF RECEPTOR 2, UNP RESIDUES 220-338; COMPND 13 SYNONYM: VEGFR-2, FETAL LIVER KINASE 1, FLK-1, KINASE INSERT DOMAIN COMPND 14 RECEPTOR, PROTEIN-TYROSINE KINASE RECEPTOR FLK-1; COMPND 15 EC: 2.7.10.1; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: MOUSE, HUMAN; SOURCE 4 ORGANISM_TAXID: 10090, 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: MAMMALIAN KIDNEY CELLS HEK293; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: MOUSE, HUMAN; SOURCE 11 ORGANISM_TAXID: 10090, 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: MAMMALIAN KIDNEY CELLS HEK293; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: FLK1, KDR; SOURCE 20 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 22 EXPRESSION_SYSTEM_CELL_LINE: HI5 KEYWDS ANTIBODY, KDR, VEGF RECEPTOR, CANCER, IMMUNE SYSTEM-TRANSFERASE KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.C.FRANKLIN REVDAT 2 08-NOV-17 3S36 1 SOURCE REVDAT 1 24-AUG-11 3S36 0 JRNL AUTH M.C.FRANKLIN,E.C.NAVARRO,Y.WANG,S.PATEL,P.SINGH,Y.ZHANG, JRNL AUTH 2 K.PERSAUD,A.BARI,H.GRIFFITH,L.SHEN,P.BALDERES,P.KUSSIE JRNL TITL THE STRUCTURAL BASIS FOR THE FUNCTION OF TWO ANTI-VEGF JRNL TITL 2 RECEPTOR 2 ANTIBODIES. JRNL REF STRUCTURE V. 19 1097 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21827946 JRNL DOI 10.1016/J.STR.2011.01.019 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 10548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.277 REMARK 3 R VALUE (WORKING SET) : 0.274 REMARK 3 FREE R VALUE : 0.332 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 522 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 750 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.4230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4104 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 91.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 124.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.97000 REMARK 3 B22 (A**2) : 4.97000 REMARK 3 B33 (A**2) : -7.45000 REMARK 3 B12 (A**2) : 2.48000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.678 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.711 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 99.966 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.905 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.867 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4199 ; 0.004 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2817 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5701 ; 0.754 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6895 ; 0.686 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 536 ; 4.402 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;28.680 ;24.172 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 688 ;11.897 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;11.130 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 645 ; 0.046 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4662 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 832 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2681 ; 0.037 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1096 ; 0.006 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4332 ; 0.071 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1518 ; 0.095 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1369 ; 0.171 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 108 REMARK 3 ORIGIN FOR THE GROUP (A): 46.8208 18.0356 -30.9653 REMARK 3 T TENSOR REMARK 3 T11: 1.2583 T22: 0.6995 REMARK 3 T33: 0.3134 T12: 0.5334 REMARK 3 T13: 0.5641 T23: 0.3416 REMARK 3 L TENSOR REMARK 3 L11: 12.8342 L22: 3.9687 REMARK 3 L33: 10.6316 L12: -1.8280 REMARK 3 L13: -0.4630 L23: 0.0655 REMARK 3 S TENSOR REMARK 3 S11: 1.4437 S12: 0.9798 S13: 0.7650 REMARK 3 S21: 0.5434 S22: 0.2387 S23: -0.1122 REMARK 3 S31: -2.8330 S32: -2.1136 S33: -1.6824 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 109 L 214 REMARK 3 ORIGIN FOR THE GROUP (A): 27.7922 8.5671 -4.8133 REMARK 3 T TENSOR REMARK 3 T11: 0.4045 T22: 0.3509 REMARK 3 T33: 0.1782 T12: -0.2599 REMARK 3 T13: 0.1634 T23: -0.0248 REMARK 3 L TENSOR REMARK 3 L11: 6.8024 L22: 5.6646 REMARK 3 L33: 11.6341 L12: -2.9023 REMARK 3 L13: 0.9647 L23: -1.2404 REMARK 3 S TENSOR REMARK 3 S11: 0.4883 S12: 0.5635 S13: 0.4686 REMARK 3 S21: 0.4070 S22: -0.6470 S23: 0.0647 REMARK 3 S31: 0.2476 S32: -0.7504 S33: 0.1587 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 2 H 116 REMARK 3 ORIGIN FOR THE GROUP (A): 62.8529 4.3152 -22.0317 REMARK 3 T TENSOR REMARK 3 T11: 0.2733 T22: 0.3699 REMARK 3 T33: 0.0623 T12: -0.1780 REMARK 3 T13: -0.0390 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 4.1533 L22: 2.9057 REMARK 3 L33: 11.4738 L12: -0.2689 REMARK 3 L13: -3.5883 L23: -2.0145 REMARK 3 S TENSOR REMARK 3 S11: 0.2937 S12: -0.6450 S13: -0.0623 REMARK 3 S21: 0.5305 S22: -0.1914 S23: -0.0862 REMARK 3 S31: -0.3199 S32: 1.5655 S33: -0.1024 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 117 H 221 REMARK 3 ORIGIN FOR THE GROUP (A): 30.5501 -7.2230 -7.7684 REMARK 3 T TENSOR REMARK 3 T11: 0.8584 T22: 0.4145 REMARK 3 T33: 0.2430 T12: -0.5335 REMARK 3 T13: 0.1820 T23: -0.2381 REMARK 3 L TENSOR REMARK 3 L11: 9.9466 L22: 7.5439 REMARK 3 L33: 8.0350 L12: -2.4518 REMARK 3 L13: 2.7428 L23: -3.1289 REMARK 3 S TENSOR REMARK 3 S11: 0.2337 S12: 0.5243 S13: -0.7323 REMARK 3 S21: 0.5175 S22: -0.7941 S23: 0.7427 REMARK 3 S31: 0.9381 S32: -0.6216 S33: 0.5604 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 219 X 330 REMARK 3 ORIGIN FOR THE GROUP (A): 79.3539 14.5117 -44.1280 REMARK 3 T TENSOR REMARK 3 T11: 0.4481 T22: 0.7673 REMARK 3 T33: 0.3984 T12: -0.3330 REMARK 3 T13: 0.0125 T23: 0.1518 REMARK 3 L TENSOR REMARK 3 L11: 9.8008 L22: 5.5796 REMARK 3 L33: 12.3320 L12: -0.4594 REMARK 3 L13: -3.0956 L23: 1.9094 REMARK 3 S TENSOR REMARK 3 S11: 0.6189 S12: -0.1524 S13: 0.5543 REMARK 3 S21: 0.4142 S22: -0.1287 S23: -0.8555 REMARK 3 S31: -0.7355 S32: 1.7185 S33: -0.4902 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3S36 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065702. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DIAMOND 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11083 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 55.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 0.68800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M IMIDAZOLE, PH 6.5; 0.1 M CACL2, REMARK 280 40% PEG 1500, 10% ISOPROPANOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 175.44067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.72033 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 87.72033 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 175.44067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU H 1 REMARK 465 SER H 131 REMARK 465 LYS H 132 REMARK 465 SER H 133 REMARK 465 THR H 134 REMARK 465 SER H 135 REMARK 465 GLY H 136 REMARK 465 ALA X 217 REMARK 465 ASP X 218 REMARK 465 ALA X 331 REMARK 465 PHE X 332 REMARK 465 GLY X 333 REMARK 465 SER X 334 REMARK 465 GLY X 335 REMARK 465 MET X 336 REMARK 465 GLU X 337 REMARK 465 SER X 338 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO X 219 N - CA - C ANGL. DEV. = 33.5 DEGREES REMARK 500 GLY X 220 N - CA - C ANGL. DEV. = 26.5 DEGREES REMARK 500 SER X 311 CB - CA - C ANGL. DEV. = -26.8 DEGREES REMARK 500 GLY X 312 N - CA - C ANGL. DEV. = 15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP L 30 -126.34 50.18 REMARK 500 ALA L 51 -71.56 69.89 REMARK 500 THR L 56 107.15 -59.60 REMARK 500 PHE L 83 96.95 -66.47 REMARK 500 GLU L 143 95.69 -66.32 REMARK 500 LYS L 190 -63.08 -100.63 REMARK 500 VAL H 12 139.52 -170.50 REMARK 500 ARG H 67 -64.14 -141.82 REMARK 500 THR H 100 -82.88 -109.69 REMARK 500 THR H 163 -42.97 -137.03 REMARK 500 ALA H 220 -2.83 86.52 REMARK 500 VAL X 238 108.43 -45.75 REMARK 500 SER X 283 -127.83 50.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3S37 RELATED DB: PDB REMARK 900 RELATED ID: 3S34 RELATED DB: PDB DBREF 3S36 X 220 338 UNP P35968 VGFR2_HUMAN 220 338 DBREF 3S36 L 1 214 PDB 3S36 3S36 1 214 DBREF 3S36 H 1 221 PDB 3S36 3S36 1 221 SEQADV 3S36 ALA X 217 UNP P35968 EXPRESSION TAG SEQADV 3S36 ASP X 218 UNP P35968 EXPRESSION TAG SEQADV 3S36 PRO X 219 UNP P35968 EXPRESSION TAG SEQRES 1 L 214 ASP ILE GLN MET THR GLN SER PRO SER SER VAL SER ALA SEQRES 2 L 214 SER ILE GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 214 GLN GLY ILE ASP ASN TRP LEU GLY TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ASP ALA SER SEQRES 5 L 214 ASN LEU ASP THR GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR TYR PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLN ALA GLU ASP PHE ALA VAL TYR PHE CYS GLN GLN ALA SEQRES 8 L 214 LYS ALA PHE PRO PRO THR PHE GLY GLY GLY THR LYS VAL SEQRES 9 L 214 ASP ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS SEQRES 1 H 221 GLU VAL GLN LEU VAL GLN SER GLY GLY GLY LEU VAL LYS SEQRES 2 H 221 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 221 PHE THR PHE SER SER TYR SER MET ASN TRP VAL ARG GLN SEQRES 4 H 221 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER SER ILE SER SEQRES 5 H 221 SER SER SER SER TYR ILE TYR TYR ALA ASP SER VAL LYS SEQRES 6 H 221 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SER SEQRES 7 H 221 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 221 ALA VAL TYR TYR CYS ALA ARG VAL THR ASP ALA PHE ASP SEQRES 9 H 221 ILE TRP GLY GLN GLY THR MET VAL THR VAL SER SER ALA SEQRES 10 H 221 SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SEQRES 11 H 221 SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS SEQRES 12 H 221 LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER SEQRES 13 H 221 TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE SEQRES 14 H 221 PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SEQRES 15 H 221 SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN SEQRES 16 H 221 THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR SEQRES 17 H 221 LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS ALA ALA SEQRES 1 X 122 ALA ASP PRO GLY TYR ARG ILE TYR ASP VAL VAL LEU SER SEQRES 2 X 122 PRO SER HIS GLY ILE GLU LEU SER VAL GLY GLU LYS LEU SEQRES 3 X 122 VAL LEU ASN CYS THR ALA ARG THR GLU LEU ASN VAL GLY SEQRES 4 X 122 ILE ASP PHE ASN TRP GLU TYR PRO SER SER LYS HIS GLN SEQRES 5 X 122 HIS LYS LYS LEU VAL ASN ARG ASP LEU LYS THR GLN SER SEQRES 6 X 122 GLY SER GLU MET LYS LYS PHE LEU SER THR LEU THR ILE SEQRES 7 X 122 ASP GLY VAL THR ARG SER ASP GLN GLY LEU TYR THR CYS SEQRES 8 X 122 ALA ALA SER SER GLY LEU MET THR LYS LYS ASN SER THR SEQRES 9 X 122 PHE VAL ARG VAL HIS GLU LYS PRO PHE VAL ALA PHE GLY SEQRES 10 X 122 SER GLY MET GLU SER HELIX 1 1 GLN L 79 PHE L 83 5 5 HELIX 2 2 SER L 121 LYS L 126 1 6 HELIX 3 3 LYS L 183 HIS L 189 1 7 HELIX 4 4 THR H 28 TYR H 32 5 5 HELIX 5 5 ASP H 62 LYS H 65 5 4 HELIX 6 6 ARG H 87 THR H 91 5 5 HELIX 7 7 SER H 159 ALA H 161 5 3 HELIX 8 8 GLN X 268 VAL X 273 1 6 HELIX 9 9 THR X 298 GLN X 302 5 5 SHEET 1 A 4 MET L 4 SER L 7 0 SHEET 2 A 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 A 4 TYR L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 A 4 PHE L 62 SER L 67 -1 N SER L 65 O THR L 72 SHEET 1 B 6 SER L 10 ALA L 13 0 SHEET 2 B 6 THR L 102 ILE L 106 1 O ASP L 105 N VAL L 11 SHEET 3 B 6 VAL L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 B 6 LEU L 33 GLN L 38 -1 N GLN L 38 O VAL L 85 SHEET 5 B 6 LYS L 45 TYR L 49 -1 O LYS L 45 N GLN L 37 SHEET 6 B 6 ASN L 53 LEU L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 C 4 SER L 114 PHE L 118 0 SHEET 2 C 4 THR L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 C 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 C 4 SER L 159 GLN L 160 -1 N GLN L 160 O THR L 178 SHEET 1 D 4 LEU L 154 GLN L 155 0 SHEET 2 D 4 LYS L 145 VAL L 150 -1 N TRP L 148 O GLN L 155 SHEET 3 D 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 D 4 VAL L 205 THR L 206 -1 O VAL L 205 N VAL L 196 SHEET 1 E 4 LEU L 154 GLN L 155 0 SHEET 2 E 4 LYS L 145 VAL L 150 -1 N TRP L 148 O GLN L 155 SHEET 3 E 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 E 4 PHE L 209 ASN L 210 -1 O PHE L 209 N TYR L 192 SHEET 1 F 4 GLN H 3 SER H 7 0 SHEET 2 F 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 F 4 SER H 78 MET H 83 -1 O LEU H 79 N CYS H 22 SHEET 4 F 4 PHE H 68 ASP H 73 -1 N SER H 71 O TYR H 80 SHEET 1 G 6 GLY H 10 VAL H 12 0 SHEET 2 G 6 THR H 110 VAL H 114 1 O MET H 111 N GLY H 10 SHEET 3 G 6 ALA H 92 VAL H 99 -1 N ALA H 92 O VAL H 112 SHEET 4 G 6 SER H 33 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 G 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 G 6 ILE H 58 TYR H 60 -1 O TYR H 59 N SER H 50 SHEET 1 H 4 GLY H 10 VAL H 12 0 SHEET 2 H 4 THR H 110 VAL H 114 1 O MET H 111 N GLY H 10 SHEET 3 H 4 ALA H 92 VAL H 99 -1 N ALA H 92 O VAL H 112 SHEET 4 H 4 PHE H 103 TRP H 106 -1 O ILE H 105 N ARG H 98 SHEET 1 I 4 SER H 123 LEU H 127 0 SHEET 2 I 4 THR H 138 TYR H 148 -1 O LEU H 144 N PHE H 125 SHEET 3 I 4 TYR H 179 PRO H 188 -1 O VAL H 185 N LEU H 141 SHEET 4 I 4 VAL H 166 THR H 168 -1 N HIS H 167 O VAL H 184 SHEET 1 J 4 SER H 123 LEU H 127 0 SHEET 2 J 4 THR H 138 TYR H 148 -1 O LEU H 144 N PHE H 125 SHEET 3 J 4 TYR H 179 PRO H 188 -1 O VAL H 185 N LEU H 141 SHEET 4 J 4 VAL H 172 LEU H 173 -1 N VAL H 172 O SER H 180 SHEET 1 K 3 THR H 154 TRP H 157 0 SHEET 2 K 3 ILE H 198 HIS H 203 -1 O ASN H 200 N SER H 156 SHEET 3 K 3 THR H 208 ARG H 213 -1 O VAL H 210 N VAL H 201 SHEET 1 L 4 ILE X 223 VAL X 227 0 SHEET 2 L 4 LEU X 244 THR X 250 -1 O THR X 247 N VAL X 227 SHEET 3 L 4 MET X 285 LEU X 292 -1 O PHE X 288 N ALA X 248 SHEET 4 L 4 LYS X 278 GLY X 282 -1 N GLY X 282 O MET X 285 SHEET 1 M 4 GLU X 235 SER X 237 0 SHEET 2 M 4 THR X 315 HIS X 325 1 O HIS X 325 N LEU X 236 SHEET 3 M 4 GLY X 303 SER X 310 -1 N ALA X 309 O LYS X 316 SHEET 4 M 4 TRP X 260 GLU X 261 -1 N GLU X 261 O THR X 306 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.03 SSBOND 3 CYS L 214 CYS H 219 1555 1555 2.04 SSBOND 4 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 5 CYS H 143 CYS H 199 1555 1555 2.03 SSBOND 6 CYS X 246 CYS X 307 1555 1555 2.03 CISPEP 1 SER L 7 PRO L 8 0 -1.91 CISPEP 2 PHE L 94 PRO L 95 0 2.17 CISPEP 3 TYR L 140 PRO L 141 0 2.26 CISPEP 4 PHE H 149 PRO H 150 0 -4.07 CISPEP 5 GLU H 151 PRO H 152 0 -6.63 CISPEP 6 SER X 229 PRO X 230 0 -2.81 CRYST1 64.864 64.864 263.161 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015417 0.008901 0.000000 0.00000 SCALE2 0.000000 0.017802 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003800 0.00000