HEADER HYDROLASE 18-MAY-11 3S3H TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PTP10D FROM DROSOPHILA TITLE 2 MELANOGASTER WITH A PHOSPHOPEPTIDE SUBSTRATE GP4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE 10D; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1250-1533; COMPND 5 SYNONYM: RECEPTOR-LINKED PROTEIN-TYROSINE PHOSPHATASE 10D, DPTP10D; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PHOSPHOPEPTIDE GP4; COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: CG1817, PTP10D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS DIFFERENTIATION, NEUROGENESIS, SIGNAL TRANSDUCTION, DEVELOPMENTAL KEYWDS 2 PROTEIN, HYDROLASE, PROTEIN PHOSPHATASE, PROTEIN TYROSINE KEYWDS 3 PHOSPHATASE EXPDTA X-RAY DIFFRACTION AUTHOR L.L.MADAN,B.GOPAL REVDAT 4 06-DEC-23 3S3H 1 REMARK REVDAT 3 01-NOV-23 3S3H 1 REMARK SEQADV REVDAT 2 03-JUL-13 3S3H 1 JRNL REVDAT 1 02-NOV-11 3S3H 0 JRNL AUTH L.L.MADAN,B.GOPAL JRNL TITL CONFORMATIONAL BASIS FOR SUBSTRATE RECRUITMENT IN PROTEIN JRNL TITL 2 TYROSINE PHOSPHATASE 10D JRNL REF BIOCHEMISTRY V. 50 10114 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 22007620 JRNL DOI 10.1021/BI201092Q REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 25293 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.252 REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1343 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1827 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4691 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 82 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.359 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.266 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.434 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.859 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.815 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4841 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6565 ; 1.401 ; 1.928 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 570 ; 7.063 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 260 ;36.212 ;22.731 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 777 ;18.978 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;18.452 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 681 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3812 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 21 A 305 4 REMARK 3 1 B 21 B 305 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2261 ; 0.63 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 305 REMARK 3 ORIGIN FOR THE GROUP (A): 34.8947 13.4886 6.2224 REMARK 3 T TENSOR REMARK 3 T11: 0.0110 T22: 0.0343 REMARK 3 T33: 0.0873 T12: 0.0047 REMARK 3 T13: -0.0255 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.6821 L22: 1.3151 REMARK 3 L33: 3.2281 L12: -0.4010 REMARK 3 L13: 0.0129 L23: -0.0184 REMARK 3 S TENSOR REMARK 3 S11: 0.0179 S12: -0.1041 S13: -0.0141 REMARK 3 S21: 0.0088 S22: -0.0016 S23: -0.0283 REMARK 3 S31: 0.0985 S32: 0.2896 S33: -0.0163 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 305 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5119 33.4035 31.2858 REMARK 3 T TENSOR REMARK 3 T11: 0.0483 T22: 0.0638 REMARK 3 T33: 0.0861 T12: 0.0142 REMARK 3 T13: -0.0125 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 1.4747 L22: 1.4234 REMARK 3 L33: 2.8953 L12: 0.1175 REMARK 3 L13: -0.5699 L23: 0.0647 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: -0.2282 S13: -0.0270 REMARK 3 S21: 0.2187 S22: 0.0651 S23: -0.0085 REMARK 3 S31: 0.0479 S32: 0.0771 S33: -0.0664 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PARAMETERS FOR MASK CACLULATION REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3S3H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065713. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : BENT COLLIMATING MIRROR AND REMARK 200 TOROID REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26708 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3S3E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG4000, 120MM CITRATE, 10% ISO REMARK 280 -PROPANOL, 10% N-BUTANOL, 10% 1,4-BUTANEDIOL, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.74000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 115.48000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 115.48000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.74000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 GLU A 306 REMARK 465 ASN A 307 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 GLY B 13 REMARK 465 LEU B 14 REMARK 465 VAL B 15 REMARK 465 PRO B 16 REMARK 465 ARG B 17 REMARK 465 GLY B 18 REMARK 465 SER B 19 REMARK 465 HIS B 20 REMARK 465 GLU B 306 REMARK 465 ASN B 307 REMARK 465 LYS C -4 REMARK 465 ASN C -3 REMARK 465 SER C -2 REMARK 465 PHE C -1 REMARK 465 VAL C 0 REMARK 465 GLN C 2 REMARK 465 LYS C 3 REMARK 465 LEU C 4 REMARK 465 SER C 5 REMARK 465 GLU C 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 ASP A 93 CG OD1 OD2 REMARK 470 GLU A 96 CB CG CD OE1 OE2 REMARK 470 ALA A 103 CB REMARK 470 SER A 124 OG REMARK 470 ARG A 152 CZ NH1 NH2 REMARK 470 SER A 195 CB OG REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 ARG B 36 CG CD NE CZ NH1 NH2 REMARK 470 ALA B 40 CB REMARK 470 ASP B 41 CG OD1 OD2 REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 LYS B 150 CG CD CE NZ REMARK 470 GLU B 153 CG CD OE1 OE2 REMARK 470 PHE B 211 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL B 246 O MET B 284 2.08 REMARK 500 O VAL A 246 O MET A 284 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 242 CA - CB - SG ANGL. DEV. = 7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 20 -23.11 -146.22 REMARK 500 GLU A 96 -98.10 110.74 REMARK 500 SER A 195 33.65 -96.36 REMARK 500 CYS A 242 -105.76 -123.61 REMARK 500 SER A 243 -63.31 -109.37 REMARK 500 VAL A 246 -70.43 -142.32 REMARK 500 TRP A 283 21.67 49.62 REMARK 500 ASP B 41 42.42 77.48 REMARK 500 ASP B 95 72.14 -110.11 REMARK 500 GLN B 157 81.09 -69.30 REMARK 500 ASP B 162 -157.73 -164.04 REMARK 500 ALA B 233 -17.98 -48.70 REMARK 500 ARG B 236 160.78 178.78 REMARK 500 CYS B 242 -118.25 -130.22 REMARK 500 VAL B 246 -59.77 -131.76 REMARK 500 ARG B 248 -57.23 116.00 REMARK 500 LEU B 302 4.89 -62.41 REMARK 500 GLU B 303 -101.36 -136.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN B 215 PRO B 216 132.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1BO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 A 309 DBREF 3S3H A 24 307 UNP P35992 PTP10_DROME 1250 1533 DBREF 3S3H B 24 307 UNP P35992 PTP10_DROME 1250 1533 DBREF 3S3H C -4 6 PDB 3S3H 3S3H -4 6 SEQADV 3S3H MET A 1 UNP P35992 EXPRESSION TAG SEQADV 3S3H GLY A 2 UNP P35992 EXPRESSION TAG SEQADV 3S3H SER A 3 UNP P35992 EXPRESSION TAG SEQADV 3S3H SER A 4 UNP P35992 EXPRESSION TAG SEQADV 3S3H HIS A 5 UNP P35992 EXPRESSION TAG SEQADV 3S3H HIS A 6 UNP P35992 EXPRESSION TAG SEQADV 3S3H HIS A 7 UNP P35992 EXPRESSION TAG SEQADV 3S3H HIS A 8 UNP P35992 EXPRESSION TAG SEQADV 3S3H HIS A 9 UNP P35992 EXPRESSION TAG SEQADV 3S3H HIS A 10 UNP P35992 EXPRESSION TAG SEQADV 3S3H SER A 11 UNP P35992 EXPRESSION TAG SEQADV 3S3H SER A 12 UNP P35992 EXPRESSION TAG SEQADV 3S3H GLY A 13 UNP P35992 EXPRESSION TAG SEQADV 3S3H LEU A 14 UNP P35992 EXPRESSION TAG SEQADV 3S3H VAL A 15 UNP P35992 EXPRESSION TAG SEQADV 3S3H PRO A 16 UNP P35992 EXPRESSION TAG SEQADV 3S3H ARG A 17 UNP P35992 EXPRESSION TAG SEQADV 3S3H GLY A 18 UNP P35992 EXPRESSION TAG SEQADV 3S3H SER A 19 UNP P35992 EXPRESSION TAG SEQADV 3S3H HIS A 20 UNP P35992 EXPRESSION TAG SEQADV 3S3H MET A 21 UNP P35992 EXPRESSION TAG SEQADV 3S3H ALA A 22 UNP P35992 EXPRESSION TAG SEQADV 3S3H SER A 23 UNP P35992 EXPRESSION TAG SEQADV 3S3H MET B 1 UNP P35992 EXPRESSION TAG SEQADV 3S3H GLY B 2 UNP P35992 EXPRESSION TAG SEQADV 3S3H SER B 3 UNP P35992 EXPRESSION TAG SEQADV 3S3H SER B 4 UNP P35992 EXPRESSION TAG SEQADV 3S3H HIS B 5 UNP P35992 EXPRESSION TAG SEQADV 3S3H HIS B 6 UNP P35992 EXPRESSION TAG SEQADV 3S3H HIS B 7 UNP P35992 EXPRESSION TAG SEQADV 3S3H HIS B 8 UNP P35992 EXPRESSION TAG SEQADV 3S3H HIS B 9 UNP P35992 EXPRESSION TAG SEQADV 3S3H HIS B 10 UNP P35992 EXPRESSION TAG SEQADV 3S3H SER B 11 UNP P35992 EXPRESSION TAG SEQADV 3S3H SER B 12 UNP P35992 EXPRESSION TAG SEQADV 3S3H GLY B 13 UNP P35992 EXPRESSION TAG SEQADV 3S3H LEU B 14 UNP P35992 EXPRESSION TAG SEQADV 3S3H VAL B 15 UNP P35992 EXPRESSION TAG SEQADV 3S3H PRO B 16 UNP P35992 EXPRESSION TAG SEQADV 3S3H ARG B 17 UNP P35992 EXPRESSION TAG SEQADV 3S3H GLY B 18 UNP P35992 EXPRESSION TAG SEQADV 3S3H SER B 19 UNP P35992 EXPRESSION TAG SEQADV 3S3H HIS B 20 UNP P35992 EXPRESSION TAG SEQADV 3S3H MET B 21 UNP P35992 EXPRESSION TAG SEQADV 3S3H ALA B 22 UNP P35992 EXPRESSION TAG SEQADV 3S3H SER B 23 UNP P35992 EXPRESSION TAG SEQRES 1 A 307 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 307 LEU VAL PRO ARG GLY SER HIS MET ALA SER ARG PRO ILE SEQRES 3 A 307 LEU ILE LYS ASN PHE ALA GLU HIS TYR ARG LEU MET SER SEQRES 4 A 307 ALA ASP SER ASP PHE ARG PHE SER GLU GLU PHE GLU GLU SEQRES 5 A 307 LEU LYS HIS VAL GLY ARG ASP GLN PRO CYS THR PHE ALA SEQRES 6 A 307 ASP LEU PRO CYS ASN ARG PRO LYS ASN ARG PHE THR ASN SEQRES 7 A 307 ILE LEU PRO TYR ASP HIS SER ARG PHE LYS LEU GLN PRO SEQRES 8 A 307 VAL ASP ASP ASP GLU GLY SER ASP TYR ILE ASN ALA ASN SEQRES 9 A 307 TYR VAL PRO GLY HIS ASN SER PRO ARG GLU PHE ILE VAL SEQRES 10 A 307 THR GLN GLY PRO LEU HIS SER THR ARG ASP ASP PHE TRP SEQRES 11 A 307 ARG MET CYS TRP GLU SER ASN SER ARG ALA ILE VAL MET SEQRES 12 A 307 LEU THR ARG CYS PHE GLU LYS GLY ARG GLU LYS CYS ASP SEQRES 13 A 307 GLN TYR TRP PRO ASN ASP THR VAL PRO VAL PHE TYR GLY SEQRES 14 A 307 ASP ILE LYS VAL GLN ILE LEU ASN ASP SER HIS TYR ALA SEQRES 15 A 307 ASP TRP VAL MET THR GLU PHE MET LEU CYS ARG GLY SER SEQRES 16 A 307 GLU GLN ARG ILE LEU ARG HIS PHE HIS PHE THR THR TRP SEQRES 17 A 307 PRO ASP PHE GLY VAL PRO ASN PRO PRO GLN THR LEU VAL SEQRES 18 A 307 ARG PHE VAL ARG ALA PHE ARG ASP ARG ILE GLY ALA GLU SEQRES 19 A 307 GLN ARG PRO ILE VAL VAL HIS CYS SER ALA GLY VAL GLY SEQRES 20 A 307 ARG SER GLY THR PHE ILE THR LEU ASP ARG ILE LEU GLN SEQRES 21 A 307 GLN ILE ASN THR SER ASP TYR VAL ASP ILE PHE GLY ILE SEQRES 22 A 307 VAL TYR ALA MET ARG LYS GLU ARG VAL TRP MET VAL GLN SEQRES 23 A 307 THR GLU GLN GLN TYR ILE CYS ILE HIS GLN CYS LEU LEU SEQRES 24 A 307 ALA VAL LEU GLU GLY LYS GLU ASN SEQRES 1 B 307 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 307 LEU VAL PRO ARG GLY SER HIS MET ALA SER ARG PRO ILE SEQRES 3 B 307 LEU ILE LYS ASN PHE ALA GLU HIS TYR ARG LEU MET SER SEQRES 4 B 307 ALA ASP SER ASP PHE ARG PHE SER GLU GLU PHE GLU GLU SEQRES 5 B 307 LEU LYS HIS VAL GLY ARG ASP GLN PRO CYS THR PHE ALA SEQRES 6 B 307 ASP LEU PRO CYS ASN ARG PRO LYS ASN ARG PHE THR ASN SEQRES 7 B 307 ILE LEU PRO TYR ASP HIS SER ARG PHE LYS LEU GLN PRO SEQRES 8 B 307 VAL ASP ASP ASP GLU GLY SER ASP TYR ILE ASN ALA ASN SEQRES 9 B 307 TYR VAL PRO GLY HIS ASN SER PRO ARG GLU PHE ILE VAL SEQRES 10 B 307 THR GLN GLY PRO LEU HIS SER THR ARG ASP ASP PHE TRP SEQRES 11 B 307 ARG MET CYS TRP GLU SER ASN SER ARG ALA ILE VAL MET SEQRES 12 B 307 LEU THR ARG CYS PHE GLU LYS GLY ARG GLU LYS CYS ASP SEQRES 13 B 307 GLN TYR TRP PRO ASN ASP THR VAL PRO VAL PHE TYR GLY SEQRES 14 B 307 ASP ILE LYS VAL GLN ILE LEU ASN ASP SER HIS TYR ALA SEQRES 15 B 307 ASP TRP VAL MET THR GLU PHE MET LEU CYS ARG GLY SER SEQRES 16 B 307 GLU GLN ARG ILE LEU ARG HIS PHE HIS PHE THR THR TRP SEQRES 17 B 307 PRO ASP PHE GLY VAL PRO ASN PRO PRO GLN THR LEU VAL SEQRES 18 B 307 ARG PHE VAL ARG ALA PHE ARG ASP ARG ILE GLY ALA GLU SEQRES 19 B 307 GLN ARG PRO ILE VAL VAL HIS CYS SER ALA GLY VAL GLY SEQRES 20 B 307 ARG SER GLY THR PHE ILE THR LEU ASP ARG ILE LEU GLN SEQRES 21 B 307 GLN ILE ASN THR SER ASP TYR VAL ASP ILE PHE GLY ILE SEQRES 22 B 307 VAL TYR ALA MET ARG LYS GLU ARG VAL TRP MET VAL GLN SEQRES 23 B 307 THR GLU GLN GLN TYR ILE CYS ILE HIS GLN CYS LEU LEU SEQRES 24 B 307 ALA VAL LEU GLU GLY LYS GLU ASN SEQRES 1 C 11 LYS ASN SER PHE VAL PTR GLN LYS LEU SER GLU MODRES 3S3H PTR C 1 TYR O-PHOSPHOTYROSINE HET PTR C 1 16 HET 1BO A 308 5 HET BU1 A 309 6 HETNAM PTR O-PHOSPHOTYROSINE HETNAM 1BO 1-BUTANOL HETNAM BU1 1,4-BUTANEDIOL HETSYN PTR PHOSPHONOTYROSINE HETSYN 1BO BUTAN-1-OL FORMUL 3 PTR C9 H12 N O6 P FORMUL 4 1BO C4 H10 O FORMUL 5 BU1 C4 H10 O2 FORMUL 6 HOH *82(H2 O) HELIX 1 1 ASN A 30 GLU A 52 1 23 HELIX 2 2 THR A 63 LEU A 67 5 5 HELIX 3 3 ASN A 70 ASN A 74 5 5 HELIX 4 4 LEU A 122 SER A 124 5 3 HELIX 5 5 THR A 125 ASN A 137 1 13 HELIX 6 6 PRO A 217 GLY A 232 1 16 HELIX 7 7 VAL A 246 SER A 265 1 20 HELIX 8 8 ASP A 269 LYS A 279 1 11 HELIX 9 9 THR A 287 GLU A 303 1 17 HELIX 10 10 ASN B 30 GLU B 52 1 23 HELIX 11 11 CYS B 62 ASN B 74 5 13 HELIX 12 12 TYR B 82 HIS B 84 5 3 HELIX 13 13 THR B 125 SER B 136 1 12 HELIX 14 14 PRO B 217 ILE B 231 1 15 HELIX 15 15 ARG B 248 ILE B 262 1 15 HELIX 16 16 ASP B 269 LYS B 279 1 11 HELIX 17 17 THR B 287 LEU B 302 1 16 SHEET 1 A 2 ILE A 26 LEU A 27 0 SHEET 2 A 2 TYR A 267 VAL A 268 -1 O VAL A 268 N ILE A 26 SHEET 1 B 8 ALA A 103 VAL A 106 0 SHEET 2 B 8 PHE A 115 THR A 118 -1 O PHE A 115 N VAL A 106 SHEET 3 B 8 ILE A 238 HIS A 241 1 O ILE A 238 N ILE A 116 SHEET 4 B 8 ALA A 140 MET A 143 1 N VAL A 142 O HIS A 241 SHEET 5 B 8 GLN A 197 PHE A 205 1 O PHE A 203 N ILE A 141 SHEET 6 B 8 TRP A 184 CYS A 192 -1 N LEU A 191 O ARG A 198 SHEET 7 B 8 ILE A 171 HIS A 180 -1 N LEU A 176 O GLU A 188 SHEET 8 B 8 VAL A 166 TYR A 168 -1 N TYR A 168 O ILE A 171 SHEET 1 C 2 PHE A 148 GLU A 149 0 SHEET 2 C 2 ARG A 152 GLU A 153 -1 O ARG A 152 N GLU A 149 SHEET 1 D 2 ILE B 26 LEU B 27 0 SHEET 2 D 2 TYR B 267 VAL B 268 -1 O VAL B 268 N ILE B 26 SHEET 1 E 9 ARG B 86 LYS B 88 0 SHEET 2 E 9 TYR B 100 VAL B 106 -1 O ALA B 103 N PHE B 87 SHEET 3 E 9 PHE B 115 THR B 118 -1 O VAL B 117 N ASN B 104 SHEET 4 E 9 ILE B 238 HIS B 241 1 O VAL B 240 N ILE B 116 SHEET 5 E 9 ALA B 140 MET B 143 1 N VAL B 142 O VAL B 239 SHEET 6 E 9 GLU B 196 PHE B 205 1 O PHE B 203 N MET B 143 SHEET 7 E 9 TRP B 184 ARG B 193 -1 N LEU B 191 O ARG B 198 SHEET 8 E 9 ILE B 171 HIS B 180 -1 N LEU B 176 O GLU B 188 SHEET 9 E 9 VAL B 166 TYR B 168 -1 N TYR B 168 O ILE B 171 SHEET 1 F 2 PHE B 148 GLU B 149 0 SHEET 2 F 2 ARG B 152 GLU B 153 -1 O ARG B 152 N GLU B 149 CISPEP 1 ASN A 215 PRO A 216 0 8.43 CISPEP 2 ARG B 236 PRO B 237 0 -0.44 CISPEP 3 GLY B 304 LYS B 305 0 -6.66 SITE 1 AC1 1 LEU A 80 SITE 1 AC2 1 TYR B 267 CRYST1 102.700 102.700 173.220 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009737 0.005622 0.000000 0.00000 SCALE2 0.000000 0.011243 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005773 0.00000