HEADER HYDROLASE/HYDROLASE INHIBITOR 18-MAY-11 3S3R TITLE STRUCTURE OF CATHEPSIN B1 FROM SCHISTOSOMA MANSONI IN COMPLEX WITH TITLE 2 K11777 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATHEPSIN B-LIKE PEPTIDASE (C01 FAMILY); COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 87-340; COMPND 5 SYNONYM: CATHEPSIN B1 ISOTYPE 1; COMPND 6 EC: 3.4.22.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHISTOSOMA MANSONI; SOURCE 3 ORGANISM_COMMON: BLOOD FLUKE; SOURCE 4 ORGANISM_TAXID: 6183; SOURCE 5 GENE: CB1.1, SMP_103610; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: X33; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPICZALPHAA KEYWDS PEPTIDASE, DIGESTIVE TRACT, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.REZACOVA,A.JILKOVA,J.BRYNDA,M.HORN,M.MARES REVDAT 3 13-SEP-23 3S3R 1 REMARK SEQADV LINK REVDAT 2 26-OCT-11 3S3R 1 LINK REVDAT 1 10-AUG-11 3S3R 0 JRNL AUTH A.JILKOVA,P.REZACOVA,M.LEPSIK,M.HORN,J.VACHOVA,J.FANFRLIK, JRNL AUTH 2 J.BRYNDA,J.H.MCKERROW,C.R.CAFFREY,M.MARES JRNL TITL STRUCTURAL BASIS FOR INHIBITION OF CATHEPSIN B DRUG TARGET JRNL TITL 2 FROM THE HUMAN BLOOD FLUKE, SCHISTOSOMA MANSONI. JRNL REF J.BIOL.CHEM. V. 286 35770 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21832058 JRNL DOI 10.1074/JBC.M111.271304 REMARK 2 REMARK 2 RESOLUTION. 2.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0037 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 22916 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1236 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.64 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1432 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5953 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 123 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : 0.59000 REMARK 3 B33 (A**2) : -0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.379 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.311 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.377 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6262 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8458 ; 1.287 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 754 ; 5.878 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 274 ;33.740 ;23.759 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1058 ;17.835 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;21.363 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 833 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4801 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2877 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4229 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 238 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.198 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.139 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3857 ; 0.348 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6002 ; 0.588 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2860 ; 0.937 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2455 ; 1.491 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 71 A 325 6 REMARK 3 1 B 71 B 325 6 REMARK 3 1 C 71 C 325 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1954 ; 0.52 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 A (A): 1954 ; 0.47 ; 0.00 REMARK 3 LOOSE POSITIONAL 1 A (A): 1954 ; 0.47 ; 0.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1954 ; 1.65 ; 10.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1954 ; 1.39 ; 0.01 REMARK 3 LOOSE THERMAL 1 A (A**2): 1954 ; 1.51 ; 0.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 21 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7670 -10.0290 -1.9220 REMARK 3 T TENSOR REMARK 3 T11: -0.0003 T22: -0.1465 REMARK 3 T33: 0.0761 T12: -0.0261 REMARK 3 T13: -0.0437 T23: 0.0385 REMARK 3 L TENSOR REMARK 3 L11: 2.4710 L22: 4.0553 REMARK 3 L33: 9.8768 L12: -0.3473 REMARK 3 L13: 1.1202 L23: 3.5539 REMARK 3 S TENSOR REMARK 3 S11: -0.2744 S12: -0.2344 S13: 0.2796 REMARK 3 S21: 0.4096 S22: -0.0062 S23: -0.0521 REMARK 3 S31: 0.2418 S32: -0.3658 S33: 0.2805 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 115 A 126 REMARK 3 ORIGIN FOR THE GROUP (A): -11.7940 -10.8480 1.4630 REMARK 3 T TENSOR REMARK 3 T11: 0.2411 T22: 0.5110 REMARK 3 T33: 0.2999 T12: 0.0226 REMARK 3 T13: 0.1458 T23: -0.1578 REMARK 3 L TENSOR REMARK 3 L11: 3.5446 L22: 57.2960 REMARK 3 L33: 18.7834 L12: 2.5363 REMARK 3 L13: 6.2848 L23: 24.2163 REMARK 3 S TENSOR REMARK 3 S11: -0.4383 S12: -1.5750 S13: 0.0188 REMARK 3 S21: 2.1163 S22: -1.3523 S23: 2.4615 REMARK 3 S31: 0.8256 S32: -2.7815 S33: 1.7907 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 127 A 166 REMARK 3 ORIGIN FOR THE GROUP (A): -9.1180 -16.7220 -13.6560 REMARK 3 T TENSOR REMARK 3 T11: 0.0977 T22: 0.0989 REMARK 3 T33: 0.0551 T12: -0.1765 REMARK 3 T13: -0.0057 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 3.1854 L22: 3.7374 REMARK 3 L33: 5.9739 L12: 0.1367 REMARK 3 L13: 0.1133 L23: 1.9543 REMARK 3 S TENSOR REMARK 3 S11: 0.1196 S12: 0.0874 S13: -0.2104 REMARK 3 S21: 0.0419 S22: -0.2251 S23: 0.3703 REMARK 3 S31: 1.0480 S32: -1.0296 S33: 0.1056 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 167 A 229 REMARK 3 ORIGIN FOR THE GROUP (A): -5.8460 -20.8430 -8.9770 REMARK 3 T TENSOR REMARK 3 T11: 0.3400 T22: -0.0205 REMARK 3 T33: 0.0132 T12: -0.1497 REMARK 3 T13: 0.0149 T23: 0.0412 REMARK 3 L TENSOR REMARK 3 L11: 3.0227 L22: 4.7491 REMARK 3 L33: 5.9543 L12: -1.3278 REMARK 3 L13: -0.1732 L23: 0.2938 REMARK 3 S TENSOR REMARK 3 S11: -0.1430 S12: 0.0701 S13: -0.3256 REMARK 3 S21: 0.2733 S22: 0.0008 S23: 0.3369 REMARK 3 S31: 1.3517 S32: -0.5754 S33: 0.1422 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 230 A 256 REMARK 3 ORIGIN FOR THE GROUP (A): 7.1280 -6.5970 -9.3250 REMARK 3 T TENSOR REMARK 3 T11: -0.1626 T22: -0.1772 REMARK 3 T33: 0.1672 T12: -0.0763 REMARK 3 T13: -0.0453 T23: 0.0541 REMARK 3 L TENSOR REMARK 3 L11: 4.2438 L22: 2.7915 REMARK 3 L33: 10.5859 L12: -1.6685 REMARK 3 L13: -0.4304 L23: 0.9414 REMARK 3 S TENSOR REMARK 3 S11: -0.0698 S12: -0.1070 S13: 0.3953 REMARK 3 S21: -0.0949 S22: 0.0606 S23: -0.3071 REMARK 3 S31: -0.1645 S32: 0.8039 S33: 0.0091 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 257 A 294 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8640 -8.3530 -8.1200 REMARK 3 T TENSOR REMARK 3 T11: -0.0913 T22: 0.0596 REMARK 3 T33: 0.2341 T12: 0.0126 REMARK 3 T13: -0.0783 T23: 0.0858 REMARK 3 L TENSOR REMARK 3 L11: 1.7208 L22: 4.3764 REMARK 3 L33: 6.7059 L12: 0.8391 REMARK 3 L13: 0.8926 L23: 0.0570 REMARK 3 S TENSOR REMARK 3 S11: -0.0731 S12: 0.2268 S13: 0.3062 REMARK 3 S21: 0.1862 S22: -0.0867 S23: -0.7244 REMARK 3 S31: 0.0451 S32: 1.1655 S33: 0.1597 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 295 A 323 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6090 -6.0830 -8.3260 REMARK 3 T TENSOR REMARK 3 T11: -0.0547 T22: -0.0880 REMARK 3 T33: 0.0812 T12: -0.0265 REMARK 3 T13: -0.0254 T23: 0.0466 REMARK 3 L TENSOR REMARK 3 L11: 4.8594 L22: 4.3945 REMARK 3 L33: 6.7666 L12: -0.8231 REMARK 3 L13: 0.3448 L23: 0.3886 REMARK 3 S TENSOR REMARK 3 S11: -0.0324 S12: 0.1284 S13: 0.6147 REMARK 3 S21: -0.0227 S22: -0.1011 S23: -0.6340 REMARK 3 S31: -0.1849 S32: 0.4633 S33: 0.1335 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 70 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): -0.2620 -11.7530 31.9400 REMARK 3 T TENSOR REMARK 3 T11: 0.1428 T22: 0.2165 REMARK 3 T33: 0.0649 T12: 0.1548 REMARK 3 T13: -0.1070 T23: -0.1172 REMARK 3 L TENSOR REMARK 3 L11: 3.2936 L22: 3.2135 REMARK 3 L33: 4.9353 L12: -1.2302 REMARK 3 L13: -1.7232 L23: 0.2369 REMARK 3 S TENSOR REMARK 3 S11: -0.5644 S12: -0.5416 S13: -0.1618 REMARK 3 S21: 0.3470 S22: 0.0372 S23: 0.0193 REMARK 3 S31: 0.7006 S32: 0.0262 S33: 0.5271 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 115 B 123 REMARK 3 ORIGIN FOR THE GROUP (A): 5.1550 -22.1770 38.4220 REMARK 3 T TENSOR REMARK 3 T11: 0.6947 T22: 0.5777 REMARK 3 T33: 0.3510 T12: 0.6233 REMARK 3 T13: -0.0301 T23: -0.5435 REMARK 3 L TENSOR REMARK 3 L11: 52.2359 L22: 28.3475 REMARK 3 L33: 43.4561 L12: 8.1795 REMARK 3 L13: 47.6439 L23: 7.3372 REMARK 3 S TENSOR REMARK 3 S11: -2.8616 S12: 3.2551 S13: -2.9989 REMARK 3 S21: 3.2335 S22: 2.1982 S23: -3.5537 REMARK 3 S31: 2.6999 S32: -4.3087 S33: 0.6634 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 124 B 161 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5460 -16.8530 19.9500 REMARK 3 T TENSOR REMARK 3 T11: 0.2957 T22: 0.2312 REMARK 3 T33: 0.0914 T12: 0.3993 REMARK 3 T13: -0.0630 T23: -0.1267 REMARK 3 L TENSOR REMARK 3 L11: 4.6544 L22: 0.9960 REMARK 3 L33: 9.8582 L12: 1.7106 REMARK 3 L13: -1.0325 L23: -1.9404 REMARK 3 S TENSOR REMARK 3 S11: -0.3691 S12: 0.0113 S13: -0.0947 REMARK 3 S21: -0.2243 S22: 0.0756 S23: -0.3390 REMARK 3 S31: 1.1283 S32: 0.8752 S33: 0.2935 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 162 B 236 REMARK 3 ORIGIN FOR THE GROUP (A): 9.7160 -10.4280 26.1940 REMARK 3 T TENSOR REMARK 3 T11: 0.1669 T22: 0.3197 REMARK 3 T33: 0.1219 T12: 0.2703 REMARK 3 T13: -0.1256 T23: -0.1240 REMARK 3 L TENSOR REMARK 3 L11: 4.5426 L22: 2.5878 REMARK 3 L33: 6.0929 L12: -0.8824 REMARK 3 L13: -0.3097 L23: -0.1396 REMARK 3 S TENSOR REMARK 3 S11: -0.1868 S12: -0.2866 S13: 0.3702 REMARK 3 S21: 0.2589 S22: -0.0569 S23: -0.3490 REMARK 3 S31: 0.4685 S32: 0.9822 S33: 0.2436 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 237 B 258 REMARK 3 ORIGIN FOR THE GROUP (A): -6.1190 -3.3290 23.0070 REMARK 3 T TENSOR REMARK 3 T11: 0.0519 T22: 0.1695 REMARK 3 T33: 0.1261 T12: 0.2059 REMARK 3 T13: -0.1031 T23: -0.1866 REMARK 3 L TENSOR REMARK 3 L11: 2.5276 L22: 0.2057 REMARK 3 L33: 9.6382 L12: -0.4783 REMARK 3 L13: 0.3149 L23: 0.9919 REMARK 3 S TENSOR REMARK 3 S11: -0.2009 S12: 0.0522 S13: 0.3165 REMARK 3 S21: -0.1326 S22: -0.0753 S23: 0.2270 REMARK 3 S31: -0.4616 S32: -0.4365 S33: 0.2761 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 259 B 290 REMARK 3 ORIGIN FOR THE GROUP (A): -10.2460 -3.0990 24.7810 REMARK 3 T TENSOR REMARK 3 T11: 0.1297 T22: 0.2728 REMARK 3 T33: 0.1760 T12: 0.2725 REMARK 3 T13: -0.1539 T23: -0.1668 REMARK 3 L TENSOR REMARK 3 L11: 1.2042 L22: 0.7400 REMARK 3 L33: 6.5778 L12: -0.2183 REMARK 3 L13: -0.8043 L23: 0.9337 REMARK 3 S TENSOR REMARK 3 S11: 0.0266 S12: -0.0293 S13: 0.4188 REMARK 3 S21: -0.0793 S22: -0.0914 S23: 0.2678 REMARK 3 S31: -0.6280 S32: -0.7128 S33: 0.0648 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 291 B 323 REMARK 3 ORIGIN FOR THE GROUP (A): -5.8990 -6.9300 25.6840 REMARK 3 T TENSOR REMARK 3 T11: 0.0489 T22: 0.2028 REMARK 3 T33: 0.0449 T12: 0.1524 REMARK 3 T13: -0.0426 T23: -0.1610 REMARK 3 L TENSOR REMARK 3 L11: 2.4434 L22: 5.9682 REMARK 3 L33: 6.5780 L12: 0.7239 REMARK 3 L13: 0.8782 L23: 0.9842 REMARK 3 S TENSOR REMARK 3 S11: -0.1855 S12: -0.3123 S13: 0.2143 REMARK 3 S21: -0.0725 S22: -0.1783 S23: 0.1232 REMARK 3 S31: 0.2433 S32: -0.7557 S33: 0.3638 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 71 C 114 REMARK 3 ORIGIN FOR THE GROUP (A): 0.8910 -10.6090 -35.2270 REMARK 3 T TENSOR REMARK 3 T11: 0.0017 T22: -0.0732 REMARK 3 T33: 0.0235 T12: 0.0553 REMARK 3 T13: 0.0800 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 6.3506 L22: 3.3851 REMARK 3 L33: 11.2437 L12: -0.6285 REMARK 3 L13: 4.5809 L23: -3.2486 REMARK 3 S TENSOR REMARK 3 S11: 0.0459 S12: 0.1972 S13: 0.0547 REMARK 3 S21: 0.0369 S22: -0.4403 S23: -0.1016 REMARK 3 S31: 0.3282 S32: 0.5268 S33: 0.3945 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 115 C 141 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7650 0.2830 -41.3830 REMARK 3 T TENSOR REMARK 3 T11: 0.3131 T22: 0.0101 REMARK 3 T33: 0.3416 T12: -0.0454 REMARK 3 T13: -0.2158 T23: 0.0880 REMARK 3 L TENSOR REMARK 3 L11: 8.8245 L22: 4.3376 REMARK 3 L33: 11.6794 L12: -1.5162 REMARK 3 L13: 2.9804 L23: -5.3283 REMARK 3 S TENSOR REMARK 3 S11: -1.3532 S12: -0.5671 S13: 1.0634 REMARK 3 S21: 0.3917 S22: -0.0286 S23: -0.3046 REMARK 3 S31: -2.3999 S32: -0.2102 S33: 1.3819 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 142 C 167 REMARK 3 ORIGIN FOR THE GROUP (A): -0.4340 -0.1090 -43.7360 REMARK 3 T TENSOR REMARK 3 T11: 0.1983 T22: 0.0939 REMARK 3 T33: 0.5298 T12: -0.0850 REMARK 3 T13: -0.2141 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 8.5506 L22: 1.6898 REMARK 3 L33: 15.4678 L12: -2.0982 REMARK 3 L13: 5.8336 L23: 1.5236 REMARK 3 S TENSOR REMARK 3 S11: -1.2152 S12: -0.0098 S13: 2.2591 REMARK 3 S21: -0.4421 S22: 0.2246 S23: -0.1081 REMARK 3 S31: -1.8283 S32: 0.6002 S33: 0.9907 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 168 C 236 REMARK 3 ORIGIN FOR THE GROUP (A): -3.9550 -2.9560 -41.5920 REMARK 3 T TENSOR REMARK 3 T11: 0.1684 T22: 0.1048 REMARK 3 T33: 0.1147 T12: 0.0880 REMARK 3 T13: -0.0680 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 8.0090 L22: 4.1253 REMARK 3 L33: 8.8849 L12: -0.4841 REMARK 3 L13: 3.8066 L23: 0.4209 REMARK 3 S TENSOR REMARK 3 S11: -0.8623 S12: -0.4189 S13: 1.1915 REMARK 3 S21: -0.1803 S22: -0.0063 S23: 0.1900 REMARK 3 S31: -0.8633 S32: -0.4012 S33: 0.8685 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 237 C 250 REMARK 3 ORIGIN FOR THE GROUP (A): 0.6560 -17.2960 -45.2860 REMARK 3 T TENSOR REMARK 3 T11: 0.1918 T22: -0.0065 REMARK 3 T33: 0.0552 T12: 0.2057 REMARK 3 T13: 0.1686 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 7.5480 L22: 5.2950 REMARK 3 L33: 14.9468 L12: 1.0343 REMARK 3 L13: 7.7539 L23: 1.7927 REMARK 3 S TENSOR REMARK 3 S11: 0.1391 S12: 0.4748 S13: -0.3847 REMARK 3 S21: -0.5652 S22: -0.2388 S23: 0.1601 REMARK 3 S31: 0.9772 S32: 0.4842 S33: 0.0996 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 251 C 293 REMARK 3 ORIGIN FOR THE GROUP (A): -4.2630 -23.0080 -42.2050 REMARK 3 T TENSOR REMARK 3 T11: 0.6929 T22: 0.0346 REMARK 3 T33: 0.2764 T12: -0.0266 REMARK 3 T13: -0.0297 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 5.6952 L22: 1.7755 REMARK 3 L33: 11.3668 L12: -2.3251 REMARK 3 L13: 4.2792 L23: 0.8468 REMARK 3 S TENSOR REMARK 3 S11: 0.9986 S12: 0.1054 S13: -0.9470 REMARK 3 S21: -0.0492 S22: -0.3385 S23: 0.4334 REMARK 3 S31: 2.7831 S32: -0.2592 S33: -0.6602 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 294 C 323 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7670 -18.7190 -41.5990 REMARK 3 T TENSOR REMARK 3 T11: 0.2931 T22: 0.0465 REMARK 3 T33: 0.0902 T12: 0.1166 REMARK 3 T13: 0.0211 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 5.9822 L22: 4.8742 REMARK 3 L33: 11.8157 L12: 0.2376 REMARK 3 L13: 2.2976 L23: -0.5524 REMARK 3 S TENSOR REMARK 3 S11: 0.2459 S12: 0.8746 S13: -0.5895 REMARK 3 S21: -0.1760 S22: -0.1302 S23: -0.0966 REMARK 3 S31: 1.9699 S32: 0.3974 S33: -0.1158 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3S3R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065723. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : SI111 DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24218 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.66900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.3.0037 REMARK 200 STARTING MODEL: PDB ENTRY 3QSD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 0.2 M AMMONIUM ACETATE REMARK 280 PH6.2, 0.1 M NA CITRATE, 30% PEG 1500, PROTEIN BUFFER AND REMARK 280 CONCENTRATION: 10 MM NA-ACETATE PH 5.5, CPR = 6 MG/ML, PROTEIN: REMARK 280 RESERVOIR = 1:1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.81650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.34850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.56050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.34850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.81650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.56050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 118 REMARK 465 GLY B 119 REMARK 465 LYS B 120 REMARK 465 GLN B 121 REMARK 465 ASN B 122 REMARK 465 VAL C 70 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 117 C SER B 117 O 0.173 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 71 -157.74 -117.21 REMARK 500 SER A 95 -165.02 67.06 REMARK 500 SER A 162 -157.28 -86.16 REMARK 500 HIS A 167 17.01 55.79 REMARK 500 THR A 182 153.62 168.84 REMARK 500 ASN A 281 92.53 33.52 REMARK 500 LYS A 282 -23.87 61.80 REMARK 500 ASN A 293 172.51 65.15 REMARK 500 ILE A 313 -17.81 -49.01 REMARK 500 SER B 95 -151.68 75.36 REMARK 500 ASP B 227 118.71 -160.25 REMARK 500 PRO B 240 152.08 -50.00 REMARK 500 SER B 291 43.67 -107.82 REMARK 500 ASN B 293 168.12 64.67 REMARK 500 ASP B 309 37.71 36.42 REMARK 500 ALA B 319 -154.55 -158.85 REMARK 500 SER C 74 -8.28 -58.35 REMARK 500 SER C 95 -153.92 59.76 REMARK 500 CYS C 141 -9.65 -59.22 REMARK 500 SER C 162 -137.17 -89.15 REMARK 500 HIS C 167 6.80 50.22 REMARK 500 LYS C 215 106.32 -59.07 REMARK 500 ASN C 226 59.06 -94.77 REMARK 500 LYS C 255 -58.07 -128.26 REMARK 500 ILE C 262 -57.30 -122.21 REMARK 500 LYS C 282 -20.12 73.70 REMARK 500 ASN C 293 170.54 84.17 REMARK 500 CYS C 311 30.35 80.64 REMARK 500 GLU C 316 55.83 -141.36 REMARK 500 ALA C 319 -169.81 -171.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 LIGAND 0IW HAD A DOUBLE BOND BETWEEN ATOMS C11 AND C21 WHICH OPENS REMARK 600 UP TO FORM A LINK WITH THE CYS 100 REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: NALPHA-[(4-METHYLPIPERAZIN-1-YL)CARBONYL]-N-[(3S)-1- REMARK 630 PHENYL-5-(PHENYLSULFONYL)PENTAN-3-YL]-L-PHENYLALANINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 0IW A 324 REMARK 630 0IW B 324 REMARK 630 0IW C 324 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: ODS PHE NFP REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0IW A 324 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0IW B 324 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0IW C 324 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QSD RELATED DB: PDB REMARK 900 SAME PROTEIN WITH DIFFERENT INHIBITOR (CA074) REMARK 900 RELATED ID: 3S3Q RELATED DB: PDB REMARK 900 SAME PROTEIN WITH DIFFERENT INHIBITOR (K11017) DBREF 3S3R A 70 323 UNP Q8MNY2 Q8MNY2_SCHMA 87 340 DBREF 3S3R B 70 323 UNP Q8MNY2 Q8MNY2_SCHMA 87 340 DBREF 3S3R C 70 323 UNP Q8MNY2 Q8MNY2_SCHMA 87 340 SEQADV 3S3R ALA A 168 UNP Q8MNY2 THR 185 ENGINEERED MUTATION SEQADV 3S3R ALA A 283 UNP Q8MNY2 THR 300 ENGINEERED MUTATION SEQADV 3S3R ALA B 168 UNP Q8MNY2 THR 185 ENGINEERED MUTATION SEQADV 3S3R ALA B 283 UNP Q8MNY2 THR 300 ENGINEERED MUTATION SEQADV 3S3R ALA C 168 UNP Q8MNY2 THR 185 ENGINEERED MUTATION SEQADV 3S3R ALA C 283 UNP Q8MNY2 THR 300 ENGINEERED MUTATION SEQRES 1 A 254 VAL GLU ILE PRO SER SER PHE ASP SER ARG LYS LYS TRP SEQRES 2 A 254 PRO ARG CYS LYS SER ILE ALA THR ILE ARG ASP GLN SER SEQRES 3 A 254 ARG CYS GLY SER CYS TRP ALA PHE GLY ALA VAL GLU ALA SEQRES 4 A 254 MET SER ASP ARG SER CYS ILE GLN SER GLY GLY LYS GLN SEQRES 5 A 254 ASN VAL GLU LEU SER ALA VAL ASP LEU LEU SER CYS CYS SEQRES 6 A 254 GLU SER CYS GLY LEU GLY CYS GLU GLY GLY ILE LEU GLY SEQRES 7 A 254 PRO ALA TRP ASP TYR TRP VAL LYS GLU GLY ILE VAL THR SEQRES 8 A 254 GLY SER SER LYS GLU ASN HIS ALA GLY CYS GLU PRO TYR SEQRES 9 A 254 PRO PHE PRO LYS CYS GLU HIS HIS THR LYS GLY LYS TYR SEQRES 10 A 254 PRO PRO CYS GLY SER LYS ILE TYR LYS THR PRO ARG CYS SEQRES 11 A 254 LYS GLN THR CYS GLN LYS LYS TYR LYS THR PRO TYR THR SEQRES 12 A 254 GLN ASP LYS HIS ARG GLY LYS SER SER TYR ASN VAL LYS SEQRES 13 A 254 ASN ASP GLU LYS ALA ILE GLN LYS GLU ILE MET LYS TYR SEQRES 14 A 254 GLY PRO VAL GLU ALA GLY PHE THR VAL TYR GLU ASP PHE SEQRES 15 A 254 LEU ASN TYR LYS SER GLY ILE TYR LYS HIS ILE THR GLY SEQRES 16 A 254 GLU THR LEU GLY GLY HIS ALA ILE ARG ILE ILE GLY TRP SEQRES 17 A 254 GLY VAL GLU ASN LYS ALA PRO TYR TRP LEU ILE ALA ASN SEQRES 18 A 254 SER TRP ASN GLU ASP TRP GLY GLU ASN GLY TYR PHE ARG SEQRES 19 A 254 ILE VAL ARG GLY ARG ASP GLU CYS SER ILE GLU SER GLU SEQRES 20 A 254 VAL THR ALA GLY ARG ILE ASN SEQRES 1 B 254 VAL GLU ILE PRO SER SER PHE ASP SER ARG LYS LYS TRP SEQRES 2 B 254 PRO ARG CYS LYS SER ILE ALA THR ILE ARG ASP GLN SER SEQRES 3 B 254 ARG CYS GLY SER CYS TRP ALA PHE GLY ALA VAL GLU ALA SEQRES 4 B 254 MET SER ASP ARG SER CYS ILE GLN SER GLY GLY LYS GLN SEQRES 5 B 254 ASN VAL GLU LEU SER ALA VAL ASP LEU LEU SER CYS CYS SEQRES 6 B 254 GLU SER CYS GLY LEU GLY CYS GLU GLY GLY ILE LEU GLY SEQRES 7 B 254 PRO ALA TRP ASP TYR TRP VAL LYS GLU GLY ILE VAL THR SEQRES 8 B 254 GLY SER SER LYS GLU ASN HIS ALA GLY CYS GLU PRO TYR SEQRES 9 B 254 PRO PHE PRO LYS CYS GLU HIS HIS THR LYS GLY LYS TYR SEQRES 10 B 254 PRO PRO CYS GLY SER LYS ILE TYR LYS THR PRO ARG CYS SEQRES 11 B 254 LYS GLN THR CYS GLN LYS LYS TYR LYS THR PRO TYR THR SEQRES 12 B 254 GLN ASP LYS HIS ARG GLY LYS SER SER TYR ASN VAL LYS SEQRES 13 B 254 ASN ASP GLU LYS ALA ILE GLN LYS GLU ILE MET LYS TYR SEQRES 14 B 254 GLY PRO VAL GLU ALA GLY PHE THR VAL TYR GLU ASP PHE SEQRES 15 B 254 LEU ASN TYR LYS SER GLY ILE TYR LYS HIS ILE THR GLY SEQRES 16 B 254 GLU THR LEU GLY GLY HIS ALA ILE ARG ILE ILE GLY TRP SEQRES 17 B 254 GLY VAL GLU ASN LYS ALA PRO TYR TRP LEU ILE ALA ASN SEQRES 18 B 254 SER TRP ASN GLU ASP TRP GLY GLU ASN GLY TYR PHE ARG SEQRES 19 B 254 ILE VAL ARG GLY ARG ASP GLU CYS SER ILE GLU SER GLU SEQRES 20 B 254 VAL THR ALA GLY ARG ILE ASN SEQRES 1 C 254 VAL GLU ILE PRO SER SER PHE ASP SER ARG LYS LYS TRP SEQRES 2 C 254 PRO ARG CYS LYS SER ILE ALA THR ILE ARG ASP GLN SER SEQRES 3 C 254 ARG CYS GLY SER CYS TRP ALA PHE GLY ALA VAL GLU ALA SEQRES 4 C 254 MET SER ASP ARG SER CYS ILE GLN SER GLY GLY LYS GLN SEQRES 5 C 254 ASN VAL GLU LEU SER ALA VAL ASP LEU LEU SER CYS CYS SEQRES 6 C 254 GLU SER CYS GLY LEU GLY CYS GLU GLY GLY ILE LEU GLY SEQRES 7 C 254 PRO ALA TRP ASP TYR TRP VAL LYS GLU GLY ILE VAL THR SEQRES 8 C 254 GLY SER SER LYS GLU ASN HIS ALA GLY CYS GLU PRO TYR SEQRES 9 C 254 PRO PHE PRO LYS CYS GLU HIS HIS THR LYS GLY LYS TYR SEQRES 10 C 254 PRO PRO CYS GLY SER LYS ILE TYR LYS THR PRO ARG CYS SEQRES 11 C 254 LYS GLN THR CYS GLN LYS LYS TYR LYS THR PRO TYR THR SEQRES 12 C 254 GLN ASP LYS HIS ARG GLY LYS SER SER TYR ASN VAL LYS SEQRES 13 C 254 ASN ASP GLU LYS ALA ILE GLN LYS GLU ILE MET LYS TYR SEQRES 14 C 254 GLY PRO VAL GLU ALA GLY PHE THR VAL TYR GLU ASP PHE SEQRES 15 C 254 LEU ASN TYR LYS SER GLY ILE TYR LYS HIS ILE THR GLY SEQRES 16 C 254 GLU THR LEU GLY GLY HIS ALA ILE ARG ILE ILE GLY TRP SEQRES 17 C 254 GLY VAL GLU ASN LYS ALA PRO TYR TRP LEU ILE ALA ASN SEQRES 18 C 254 SER TRP ASN GLU ASP TRP GLY GLU ASN GLY TYR PHE ARG SEQRES 19 C 254 ILE VAL ARG GLY ARG ASP GLU CYS SER ILE GLU SER GLU SEQRES 20 C 254 VAL THR ALA GLY ARG ILE ASN HET 0IW A 324 41 HET 0IW B 324 41 HET 0IW C 324 41 HETNAM 0IW NALPHA-[(4-METHYLPIPERAZIN-1-YL)CARBONYL]-N-[(3S)-1- HETNAM 2 0IW PHENYL-5-(PHENYLSULFONYL)PENTAN-3-YL]-L- HETNAM 3 0IW PHENYLALANINAMIDE HETSYN 0IW APC-3316, BOUND FORM; 4-METHYLPIPERAZINE-1-CARBOXYLIC HETSYN 2 0IW ACID [1-[(3-BENZENESULFONYL-1-PHENETHYLALLYL) HETSYN 3 0IW CARBAMOYL]-2-PHENYLETHYL]AMIDE, BOUND FORM FORMUL 4 0IW 3(C32 H40 N4 O4 S) FORMUL 7 HOH *66(H2 O) HELIX 1 1 SER A 78 TRP A 82 1 5 HELIX 2 2 SER A 99 SER A 117 1 19 HELIX 3 3 SER A 126 CYS A 134 1 9 HELIX 4 4 LEU A 139 GLY A 143 5 5 HELIX 5 5 ILE A 145 GLU A 156 1 12 HELIX 6 6 ASP A 227 GLY A 239 1 13 HELIX 7 7 ASP A 250 TYR A 254 5 5 HELIX 8 8 ASP A 309 ILE A 313 5 5 HELIX 9 9 SER B 78 TRP B 82 1 5 HELIX 10 10 SER B 99 GLN B 116 1 18 HELIX 11 11 SER B 126 CYS B 134 1 9 HELIX 12 12 LEU B 139 GLY B 143 5 5 HELIX 13 13 LEU B 146 GLU B 156 1 11 HELIX 14 14 PRO B 210 ASP B 214 5 5 HELIX 15 15 ASP B 227 GLY B 239 1 13 HELIX 16 16 ASP B 250 TYR B 254 5 5 HELIX 17 17 ASP B 309 ILE B 313 5 5 HELIX 18 18 SER C 78 TRP C 82 1 5 HELIX 19 19 CYS C 85 THR C 90 5 6 HELIX 20 20 SER C 99 GLN C 116 1 18 HELIX 21 21 SER C 126 CYS C 134 1 9 HELIX 22 22 LEU C 139 GLY C 143 5 5 HELIX 23 23 ILE C 145 GLU C 156 1 12 HELIX 24 24 PRO C 210 LYS C 215 5 6 HELIX 25 25 ASP C 227 GLY C 239 1 13 HELIX 26 26 ASP C 250 TYR C 254 5 5 SHEET 1 A 3 PHE A 76 ASP A 77 0 SHEET 2 A 3 THR A 266 GLU A 280 -1 O TRP A 277 N PHE A 76 SHEET 3 A 3 VAL A 241 TYR A 248 -1 N ALA A 243 O ILE A 272 SHEET 1 B 5 PHE A 76 ASP A 77 0 SHEET 2 B 5 THR A 266 GLU A 280 -1 O TRP A 277 N PHE A 76 SHEET 3 B 5 ALA A 283 ALA A 289 -1 O ALA A 289 N ARG A 273 SHEET 4 B 5 TYR A 301 VAL A 305 -1 O PHE A 302 N ILE A 288 SHEET 5 B 5 ILE A 258 TYR A 259 1 N TYR A 259 O ARG A 303 SHEET 1 C 2 SER A 220 ASN A 223 0 SHEET 2 C 2 THR A 318 ARG A 321 -1 O ALA A 319 N TYR A 222 SHEET 1 D 5 PHE B 76 ASP B 77 0 SHEET 2 D 5 THR B 266 GLU B 280 -1 O TRP B 277 N PHE B 76 SHEET 3 D 5 VAL B 241 TYR B 248 -1 N PHE B 245 O HIS B 270 SHEET 4 D 5 GLU B 316 ARG B 321 -1 O THR B 318 N GLU B 242 SHEET 5 D 5 SER B 220 VAL B 224 -1 N VAL B 224 O VAL B 317 SHEET 1 E 5 PHE B 76 ASP B 77 0 SHEET 2 E 5 THR B 266 GLU B 280 -1 O TRP B 277 N PHE B 76 SHEET 3 E 5 ALA B 283 ALA B 289 -1 O LEU B 287 N GLY B 276 SHEET 4 E 5 TYR B 301 VAL B 305 -1 O PHE B 302 N ILE B 288 SHEET 5 E 5 ILE B 258 TYR B 259 1 N TYR B 259 O ARG B 303 SHEET 1 F 3 PHE C 76 ASP C 77 0 SHEET 2 F 3 THR C 266 GLU C 280 -1 O TRP C 277 N PHE C 76 SHEET 3 F 3 VAL C 241 TYR C 248 -1 N ALA C 243 O ILE C 272 SHEET 1 G 5 PHE C 76 ASP C 77 0 SHEET 2 G 5 THR C 266 GLU C 280 -1 O TRP C 277 N PHE C 76 SHEET 3 G 5 ALA C 283 ALA C 289 -1 O ALA C 289 N ARG C 273 SHEET 4 G 5 TYR C 301 VAL C 305 -1 O ILE C 304 N TRP C 286 SHEET 5 G 5 ILE C 258 TYR C 259 1 N TYR C 259 O ARG C 303 SHEET 1 H 2 SER C 220 VAL C 224 0 SHEET 2 H 2 VAL C 317 ARG C 321 -1 O VAL C 317 N VAL C 224 SSBOND 1 CYS A 85 CYS A 114 1555 1555 2.04 SSBOND 2 CYS A 97 CYS A 141 1555 1555 2.05 SSBOND 3 CYS A 133 CYS A 199 1555 1555 2.05 SSBOND 4 CYS A 134 CYS A 137 1555 1555 2.05 SSBOND 5 CYS A 170 CYS A 203 1555 1555 2.04 SSBOND 6 CYS A 178 CYS A 189 1555 1555 2.04 SSBOND 7 CYS B 85 CYS B 114 1555 1555 2.05 SSBOND 8 CYS B 97 CYS B 141 1555 1555 2.05 SSBOND 9 CYS B 133 CYS B 199 1555 1555 2.02 SSBOND 10 CYS B 134 CYS B 137 1555 1555 2.06 SSBOND 11 CYS B 170 CYS B 203 1555 1555 2.04 SSBOND 12 CYS B 178 CYS B 189 1555 1555 2.05 SSBOND 13 CYS C 85 CYS C 114 1555 1555 2.04 SSBOND 14 CYS C 97 CYS C 141 1555 1555 2.04 SSBOND 15 CYS C 133 CYS C 199 1555 1555 2.06 SSBOND 16 CYS C 134 CYS C 137 1555 1555 2.06 SSBOND 17 CYS C 170 CYS C 203 1555 1555 2.07 SSBOND 18 CYS C 178 CYS C 189 1555 1555 2.04 LINK SG CYS A 100 C21 0IW A 324 1555 1555 2.20 LINK SG CYS B 100 C21 0IW B 324 1555 1555 2.10 LINK SG CYS C 100 C21 0IW C 324 1555 1555 2.19 SITE 1 AC1 16 HOH A 25 GLN A 94 GLY A 98 CYS A 100 SITE 2 AC1 16 TRP A 101 LEU A 139 CYS A 141 GLU A 142 SITE 3 AC1 16 GLY A 143 GLY A 144 GLY A 244 GLY A 269 SITE 4 AC1 16 HIS A 270 TRP A 292 ARG C 79 PRO C 83 SITE 1 AC2 13 ARG A 79 PRO A 83 GLN B 94 CYS B 100 SITE 2 AC2 13 TRP B 101 CYS B 141 GLY B 143 GLY B 144 SITE 3 AC2 13 GLY B 244 GLY B 269 HIS B 270 TRP B 292 SITE 4 AC2 13 GLU B 316 SITE 1 AC3 15 ARG B 79 LYS B 80 PRO B 83 GLN C 94 SITE 2 AC3 15 GLY C 98 CYS C 100 TRP C 101 GLY C 143 SITE 3 AC3 15 GLY C 144 ILE C 145 LEU C 146 GLY C 269 SITE 4 AC3 15 HIS C 270 TRP C 292 GLU C 316 CRYST1 77.633 103.121 100.697 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012881 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009697 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009931 0.00000