HEADER ANTIVIRAL PROTEIN 18-MAY-11 3S3Z TITLE CRYSTAL STRUCTURE AN TANDEM CYANOVIRIN-N DIMER, CVN2L10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TANDEM CYANOVIRIN-N DIMER CVN2L10; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CV-N; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC ELLIPSOSPORUM; SOURCE 3 ORGANISM_TAXID: 45916; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS CYANOVIRIN-N, SUGAR-BINDING, GP120, ENGINEERED DIMER, ANTIVIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.R.KEEFFE,P.J.BJORKMAN,S.L.MAYO REVDAT 5 13-SEP-23 3S3Z 1 REMARK SEQADV REVDAT 4 02-AUG-17 3S3Z 1 SOURCE REMARK REVDAT 3 14-SEP-11 3S3Z 1 JRNL REVDAT 2 10-AUG-11 3S3Z 1 JRNL REVDAT 1 03-AUG-11 3S3Z 0 JRNL AUTH J.R.KEEFFE,P.N.GNANAPRAGASAM,S.K.GILLESPIE,J.YONG, JRNL AUTH 2 P.J.BJORKMAN,S.L.MAYO JRNL TITL DESIGNED OLIGOMERS OF CYANOVIRIN-N SHOW ENHANCED HIV JRNL TITL 2 NEUTRALIZATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 14079 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21799112 JRNL DOI 10.1073/PNAS.1108777108 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 11116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 528 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 758 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 31 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 786 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.110 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.260 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 835 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1141 ; 1.351 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 118 ; 5.961 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 38 ;32.431 ;26.316 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 147 ;12.784 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;23.205 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 133 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 632 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 535 ; 0.850 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 867 ; 1.549 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 300 ; 2.464 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 267 ; 4.345 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: (1) ONLY HALF OF THE CRYSTALLIZED REMARK 3 MOLECULE IS IN THE ASYMMETRIC UNIT. THE ENTIRE POLYPEPTIDE CHAIN REMARK 3 (BIOLOGICALLY RELEVANT MOLECULE) IS GENERATED BY THE OPERATIONS: REMARK 3 Y, X, -Z. (2) BECAUSE ONLY HALF OF THE BIOLOGICALLY RELEVANT REMARK 3 MOLECULE IS IN THE ASYMMETRIC UNIT, THE DENSITY CORRESPONDING TO REMARK 3 RESIDUE 0 IN THE STRUCTURE IS FROM BOTH AN ARG IN THE EXPRESSION REMARK 3 TAG (RESIDUE 0 OF THE SEQUENCE) AND A GLY FROM THE LINKER REMARK 3 (RESIDUE 111 OF THE SEQUENCE). SINCE SIDE CHAIN DENSITY WAS NOT REMARK 3 SEEN, THE BACKBONE WAS MODELED AT 100% OCCUPANCY AND THE SIDE REMARK 3 CHAIN WAS NOT MODELED. (3) HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 3S3Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-11. REMARK 100 THE DEPOSITION ID IS D_1000065731. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99984 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11158 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 41.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : 0.10300 REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.38400 REMARK 200 R SYM FOR SHELL (I) : 0.38400 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.3.3 REMARK 200 STARTING MODEL: PDB ENTRY 3EZM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2 M SODIUM FLUORIDE, REMARK 280 PH 7.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.87867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.43933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.43933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.87867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICALLY RELEVANT MOLECULE IS REMARK 300 GENERATED BY APPLYING THE CRYSTALLOGRAPHIC SYMMETRY OPERATIONS Y, X, REMARK 300 -Z TO THE FIRST HALF OF THE PROTEIN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 ILE A -3 REMARK 465 GLU A -2 REMARK 465 SER A 104 REMARK 465 GLY A 105 REMARK 465 GLY A 106 REMARK 465 GLY A 107 REMARK 465 GLY A 108 REMARK 465 SER A 109 REMARK 465 GLY A 110 REMARK 465 GLY A 111 REMARK 465 LEU A 112 REMARK 465 GLY A 113 REMARK 465 LYS A 114 REMARK 465 PHE A 115 REMARK 465 SER A 116 REMARK 465 GLN A 117 REMARK 465 THR A 118 REMARK 465 CYS A 119 REMARK 465 TYR A 120 REMARK 465 ASN A 121 REMARK 465 SER A 122 REMARK 465 ALA A 123 REMARK 465 ILE A 124 REMARK 465 GLN A 125 REMARK 465 GLY A 126 REMARK 465 SER A 127 REMARK 465 VAL A 128 REMARK 465 LEU A 129 REMARK 465 THR A 130 REMARK 465 SER A 131 REMARK 465 THR A 132 REMARK 465 CYS A 133 REMARK 465 GLU A 134 REMARK 465 ARG A 135 REMARK 465 THR A 136 REMARK 465 ASN A 137 REMARK 465 GLY A 138 REMARK 465 GLY A 139 REMARK 465 TYR A 140 REMARK 465 ASN A 141 REMARK 465 THR A 142 REMARK 465 SER A 143 REMARK 465 SER A 144 REMARK 465 ILE A 145 REMARK 465 ASP A 146 REMARK 465 LEU A 147 REMARK 465 ASN A 148 REMARK 465 SER A 149 REMARK 465 VAL A 150 REMARK 465 ILE A 151 REMARK 465 GLU A 152 REMARK 465 ASN A 153 REMARK 465 VAL A 154 REMARK 465 ASP A 155 REMARK 465 GLY A 156 REMARK 465 SER A 157 REMARK 465 LEU A 158 REMARK 465 LYS A 159 REMARK 465 TRP A 160 REMARK 465 GLN A 161 REMARK 465 PRO A 162 REMARK 465 SER A 163 REMARK 465 ASN A 164 REMARK 465 PHE A 165 REMARK 465 ILE A 166 REMARK 465 GLU A 167 REMARK 465 THR A 168 REMARK 465 CYS A 169 REMARK 465 ARG A 170 REMARK 465 ASN A 171 REMARK 465 THR A 172 REMARK 465 GLN A 173 REMARK 465 LEU A 174 REMARK 465 ALA A 175 REMARK 465 GLY A 176 REMARK 465 SER A 177 REMARK 465 SER A 178 REMARK 465 GLU A 179 REMARK 465 LEU A 180 REMARK 465 ALA A 181 REMARK 465 ALA A 182 REMARK 465 GLU A 183 REMARK 465 CYS A 184 REMARK 465 LYS A 185 REMARK 465 THR A 186 REMARK 465 ARG A 187 REMARK 465 ALA A 188 REMARK 465 GLN A 189 REMARK 465 GLN A 190 REMARK 465 PHE A 191 REMARK 465 VAL A 192 REMARK 465 SER A 193 REMARK 465 THR A 194 REMARK 465 LYS A 195 REMARK 465 ILE A 196 REMARK 465 ASN A 197 REMARK 465 LEU A 198 REMARK 465 ASP A 199 REMARK 465 ASP A 200 REMARK 465 HIS A 201 REMARK 465 ILE A 202 REMARK 465 ALA A 203 REMARK 465 ASN A 204 REMARK 465 ILE A 205 REMARK 465 ASP A 206 REMARK 465 GLY A 207 REMARK 465 THR A 208 REMARK 465 LEU A 209 REMARK 465 LYS A 210 REMARK 465 TYR A 211 REMARK 465 GLU A 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 0 CB CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 14 CD OE1 NE2 REMARK 480 GLN A 79 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 23 OH TYR A 29 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 14 CG GLN A 14 CD 0.156 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 26 31.26 -99.89 REMARK 500 SER A 67 -3.59 -147.93 REMARK 500 HIS A 90 -0.79 -143.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 214 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3S3Y RELATED DB: PDB REMARK 900 STRUCTURE OF CVN2L0 DBREF 3S3Z A 1 101 UNP P81180 CVN_NOSEL 1 101 DBREF 3S3Z A 112 212 UNP P81180 CVN_NOSEL 1 101 SEQADV 3S3Z GLY A -10 UNP P81180 EXPRESSION TAG SEQADV 3S3Z HIS A -9 UNP P81180 EXPRESSION TAG SEQADV 3S3Z HIS A -8 UNP P81180 EXPRESSION TAG SEQADV 3S3Z HIS A -7 UNP P81180 EXPRESSION TAG SEQADV 3S3Z HIS A -6 UNP P81180 EXPRESSION TAG SEQADV 3S3Z HIS A -5 UNP P81180 EXPRESSION TAG SEQADV 3S3Z HIS A -4 UNP P81180 EXPRESSION TAG SEQADV 3S3Z ILE A -3 UNP P81180 EXPRESSION TAG SEQADV 3S3Z GLU A -2 UNP P81180 EXPRESSION TAG SEQADV 3S3Z GLY A -1 UNP P81180 EXPRESSION TAG SEQADV 3S3Z ARG A 0 UNP P81180 EXPRESSION TAG SEQADV 3S3Z GLY A 102 UNP P81180 LINKER SEQADV 3S3Z GLY A 103 UNP P81180 LINKER SEQADV 3S3Z SER A 104 UNP P81180 LINKER SEQADV 3S3Z GLY A 105 UNP P81180 LINKER SEQADV 3S3Z GLY A 106 UNP P81180 LINKER SEQADV 3S3Z GLY A 107 UNP P81180 LINKER SEQADV 3S3Z GLY A 108 UNP P81180 LINKER SEQADV 3S3Z SER A 109 UNP P81180 LINKER SEQADV 3S3Z GLY A 110 UNP P81180 LINKER SEQADV 3S3Z GLY A 111 UNP P81180 LINKER SEQRES 1 A 223 GLY HIS HIS HIS HIS HIS HIS ILE GLU GLY ARG LEU GLY SEQRES 2 A 223 LYS PHE SER GLN THR CYS TYR ASN SER ALA ILE GLN GLY SEQRES 3 A 223 SER VAL LEU THR SER THR CYS GLU ARG THR ASN GLY GLY SEQRES 4 A 223 TYR ASN THR SER SER ILE ASP LEU ASN SER VAL ILE GLU SEQRES 5 A 223 ASN VAL ASP GLY SER LEU LYS TRP GLN PRO SER ASN PHE SEQRES 6 A 223 ILE GLU THR CYS ARG ASN THR GLN LEU ALA GLY SER SER SEQRES 7 A 223 GLU LEU ALA ALA GLU CYS LYS THR ARG ALA GLN GLN PHE SEQRES 8 A 223 VAL SER THR LYS ILE ASN LEU ASP ASP HIS ILE ALA ASN SEQRES 9 A 223 ILE ASP GLY THR LEU LYS TYR GLU GLY GLY SER GLY GLY SEQRES 10 A 223 GLY GLY SER GLY GLY LEU GLY LYS PHE SER GLN THR CYS SEQRES 11 A 223 TYR ASN SER ALA ILE GLN GLY SER VAL LEU THR SER THR SEQRES 12 A 223 CYS GLU ARG THR ASN GLY GLY TYR ASN THR SER SER ILE SEQRES 13 A 223 ASP LEU ASN SER VAL ILE GLU ASN VAL ASP GLY SER LEU SEQRES 14 A 223 LYS TRP GLN PRO SER ASN PHE ILE GLU THR CYS ARG ASN SEQRES 15 A 223 THR GLN LEU ALA GLY SER SER GLU LEU ALA ALA GLU CYS SEQRES 16 A 223 LYS THR ARG ALA GLN GLN PHE VAL SER THR LYS ILE ASN SEQRES 17 A 223 LEU ASP ASP HIS ILE ALA ASN ILE ASP GLY THR LEU LYS SEQRES 18 A 223 TYR GLU HET NA A 213 1 HET NA A 214 1 HETNAM NA SODIUM ION FORMUL 2 NA 2(NA 1+) FORMUL 4 HOH *87(H2 O) HELIX 1 1 LYS A 3 GLN A 6 5 4 HELIX 2 2 ASN A 53 GLU A 56 5 4 SHEET 1 A 3 CYS A 8 GLN A 14 0 SHEET 2 A 3 VAL A 17 GLU A 23 -1 O THR A 21 N TYR A 9 SHEET 3 A 3 TYR A 29 ASP A 35 -1 O ASN A 30 N CYS A 22 SHEET 1 B 2 ILE A 40 VAL A 43 0 SHEET 2 B 2 SER A 46 TRP A 49 -1 O LYS A 48 N GLU A 41 SHEET 1 C 3 CYS A 58 ALA A 64 0 SHEET 2 C 3 GLU A 68 LYS A 74 -1 O GLU A 68 N ALA A 64 SHEET 3 C 3 PHE A 80 ASN A 86 -1 O ILE A 85 N LEU A 69 SHEET 1 D 2 ILE A 91 ILE A 94 0 SHEET 2 D 2 THR A 97 TYR A 100 -1 O LYS A 99 N ALA A 92 SSBOND 1 CYS A 8 CYS A 22 1555 1555 2.05 SSBOND 2 CYS A 58 CYS A 73 1555 1555 2.06 LINK NA NA A 213 O HOH A 229 1555 1555 2.78 SITE 1 AC1 3 ASN A 30 THR A 31 HOH A 229 SITE 1 AC2 5 SER A 46 THR A 83 ILE A 94 HOH A 260 SITE 2 AC2 5 HOH A 288 CRYST1 47.990 47.990 79.318 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020838 0.012031 0.000000 0.00000 SCALE2 0.000000 0.024061 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012608 0.00000