HEADER TRANSPORT PROTEIN,SIGNALING PROTEIN/DNA 21-MAY-11 3S58 OBSLTE 30-APR-14 3S58 4OI7 TITLE RAGE RECOGNIZES NUCLEIC ACIDS AND PROMOTES INFLAMMATORY RESPONSES TO TITLE 2 DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADVANCED GLYCOSYLATION END PRODUCT-SPECIFIC RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: V-C1 DOMAIN, RESIDUES 21-237; COMPND 5 SYNONYM: RECEPTOR FOR ADVANCED GLYCOSYLATION END PRODUCTS; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*CP*TP*GP*CP*AP*AP*CP*GP*AP*TP*GP*CP*TP*AP*CP*GP*AP*AP COMPND 9 *CP*GP*TP*G)-3'; COMPND 10 CHAIN: E; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*CP*AP*CP*GP*TP*TP*CP*GP*TP*AP*GP*CP*AP*TP*CP*GP*TP*TP COMPND 14 *GP*CP*AP*G)-3'; COMPND 15 CHAIN: F; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AGER, RAGE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS IG SUPERFAMILY FOLD, NUCLEIC ACID BINDING, NUCLEIC ACIDS, KEYWDS 2 EXTRACELLULAR, TRANSPORT PROTEIN,SIGNALING PROTEIN, TRANSPORT KEYWDS 3 PROTEIN,SIGNALING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.JIN,T.XIAO REVDAT 3 30-APR-14 3S58 1 OBSLTE REVDAT 2 30-OCT-13 3S58 1 JRNL REVDAT 1 30-MAY-12 3S58 0 JRNL AUTH C.M.SIROIS,T.JIN,A.L.MILLER,D.BERTHELOOT,H.NAKAMURA, JRNL AUTH 2 G.L.HORVATH,A.MIAN,J.JIANG,J.SCHRUM,L.BOSSALLER,K.PELKA, JRNL AUTH 3 N.GARBI,Y.BREWAH,J.TIAN,C.CHANG,P.S.CHOWDHURY,G.P.SIMS, JRNL AUTH 4 R.KOLBECK,A.J.COYLE,A.A.HUMBLES,T.S.XIAO,E.LATZ JRNL TITL RAGE IS A NUCLEIC ACID RECEPTOR THAT PROMOTES INFLAMMATORY JRNL TITL 2 RESPONSES TO DNA. JRNL REF J.EXP.MED. V. 210 2447 2013 JRNL REFN ISSN 0022-1007 JRNL PMID 24081950 JRNL DOI 10.1084/JEM.20120201 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_736) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 13758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 17.4567 - 5.2728 0.95 2645 129 0.1717 0.2203 REMARK 3 2 5.2728 - 4.2044 0.95 2634 135 0.1602 0.1967 REMARK 3 3 4.2044 - 3.6786 0.95 2604 143 0.1997 0.2319 REMARK 3 4 3.6786 - 3.3449 0.95 2617 136 0.2356 0.2884 REMARK 3 5 3.3449 - 3.1066 0.90 2476 142 0.2539 0.2972 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 72.70 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 19.47110 REMARK 3 B22 (A**2) : 19.47110 REMARK 3 B33 (A**2) : -38.94210 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4437 REMARK 3 ANGLE : 0.975 6128 REMARK 3 CHIRALITY : 0.055 668 REMARK 3 PLANARITY : 0.005 650 REMARK 3 DIHEDRAL : 22.836 1728 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resseq 23:61) REMARK 3 ORIGIN FOR THE GROUP (A): 36.9693 -8.5706 -8.8960 REMARK 3 T TENSOR REMARK 3 T11: 0.5554 T22: 0.3875 REMARK 3 T33: 0.6390 T12: 0.0718 REMARK 3 T13: 0.1460 T23: 0.0585 REMARK 3 L TENSOR REMARK 3 L11: 5.3468 L22: 7.2952 REMARK 3 L33: 5.2841 L12: 0.4326 REMARK 3 L13: 1.7477 L23: 0.7873 REMARK 3 S TENSOR REMARK 3 S11: 0.1811 S12: -0.6331 S13: -0.0475 REMARK 3 S21: 0.8432 S22: 0.3961 S23: -0.3940 REMARK 3 S31: -0.2966 S32: -0.4848 S33: -0.4383 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resseq 62:94) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4046 -7.6434 -11.7473 REMARK 3 T TENSOR REMARK 3 T11: 0.5096 T22: 0.1821 REMARK 3 T33: 0.5871 T12: 0.0952 REMARK 3 T13: 0.0454 T23: 0.1810 REMARK 3 L TENSOR REMARK 3 L11: 0.5219 L22: 2.0202 REMARK 3 L33: 0.7958 L12: -0.2055 REMARK 3 L13: 0.0338 L23: 1.2266 REMARK 3 S TENSOR REMARK 3 S11: 0.1508 S12: 0.2880 S13: 0.5599 REMARK 3 S21: 0.1879 S22: -0.0876 S23: 0.3937 REMARK 3 S31: -1.2859 S32: -0.4377 S33: -0.0748 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and (resseq 95:107) REMARK 3 ORIGIN FOR THE GROUP (A): 39.3989 -6.1323 1.4500 REMARK 3 T TENSOR REMARK 3 T11: 0.7344 T22: 0.5547 REMARK 3 T33: 0.3828 T12: 0.0661 REMARK 3 T13: -0.1609 T23: -0.0754 REMARK 3 L TENSOR REMARK 3 L11: 7.5526 L22: 6.3969 REMARK 3 L33: 2.1253 L12: 0.9489 REMARK 3 L13: 0.2976 L23: -0.2643 REMARK 3 S TENSOR REMARK 3 S11: -0.1692 S12: -1.9809 S13: 0.1798 REMARK 3 S21: 1.8129 S22: -0.1380 S23: -0.5514 REMARK 3 S31: -1.1057 S32: 0.5474 S33: 0.0164 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'A' and (resseq 108:147) REMARK 3 ORIGIN FOR THE GROUP (A): 47.8060 -10.8562 -37.1484 REMARK 3 T TENSOR REMARK 3 T11: 0.6317 T22: 0.2398 REMARK 3 T33: 0.5448 T12: 0.0142 REMARK 3 T13: 0.0938 T23: 0.0552 REMARK 3 L TENSOR REMARK 3 L11: 3.1487 L22: 1.6449 REMARK 3 L33: 3.7998 L12: -1.1010 REMARK 3 L13: -3.1846 L23: 0.7062 REMARK 3 S TENSOR REMARK 3 S11: 0.5903 S12: 0.3857 S13: 0.4537 REMARK 3 S21: -0.1788 S22: -0.0488 S23: -0.2227 REMARK 3 S31: 0.1839 S32: 0.1740 S33: -0.3918 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'A' and (resseq 148:233) REMARK 3 ORIGIN FOR THE GROUP (A): 53.6100 -11.7310 -44.8503 REMARK 3 T TENSOR REMARK 3 T11: 0.2045 T22: -0.0066 REMARK 3 T33: 0.2081 T12: 0.2900 REMARK 3 T13: 0.3159 T23: 0.0423 REMARK 3 L TENSOR REMARK 3 L11: 1.0374 L22: 1.8600 REMARK 3 L33: 1.4997 L12: -0.4612 REMARK 3 L13: -0.6733 L23: 0.1061 REMARK 3 S TENSOR REMARK 3 S11: 0.3359 S12: 0.2276 S13: 0.1574 REMARK 3 S21: -0.3999 S22: -0.1921 S23: -0.1492 REMARK 3 S31: -0.4155 S32: -0.0726 S33: 0.0271 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain 'B' and (resseq 21:83) REMARK 3 ORIGIN FOR THE GROUP (A): 23.9775 -25.9801 -16.1951 REMARK 3 T TENSOR REMARK 3 T11: 0.1531 T22: 0.3824 REMARK 3 T33: 0.3703 T12: 0.0131 REMARK 3 T13: -0.0630 T23: 0.1070 REMARK 3 L TENSOR REMARK 3 L11: 6.1891 L22: 3.8847 REMARK 3 L33: 4.7073 L12: 2.4435 REMARK 3 L13: 1.5841 L23: -0.2060 REMARK 3 S TENSOR REMARK 3 S11: -0.2499 S12: 0.1461 S13: -0.1742 REMARK 3 S21: -0.3914 S22: 0.2307 S23: 0.1530 REMARK 3 S31: 0.0596 S32: -0.3406 S33: 0.0384 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: chain 'B' and (resseq 84:107) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9883 -28.4929 -17.5856 REMARK 3 T TENSOR REMARK 3 T11: 0.2898 T22: 0.5823 REMARK 3 T33: 0.3329 T12: -0.2900 REMARK 3 T13: 0.0337 T23: 0.0942 REMARK 3 L TENSOR REMARK 3 L11: 2.3501 L22: 3.1784 REMARK 3 L33: 0.5741 L12: 1.9926 REMARK 3 L13: -0.9670 L23: -0.8458 REMARK 3 S TENSOR REMARK 3 S11: -0.5068 S12: 0.9116 S13: -0.1808 REMARK 3 S21: -0.7619 S22: 0.4783 S23: 0.0100 REMARK 3 S31: 0.3176 S32: -0.5220 S33: -0.2769 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: chain 'B' and (resseq 108:205) REMARK 3 ORIGIN FOR THE GROUP (A): 33.8941 -39.4428 16.6848 REMARK 3 T TENSOR REMARK 3 T11: 0.0024 T22: 0.4641 REMARK 3 T33: 0.6176 T12: 0.0985 REMARK 3 T13: -0.0300 T23: 0.3676 REMARK 3 L TENSOR REMARK 3 L11: 2.5395 L22: 0.3037 REMARK 3 L33: 3.1442 L12: -0.2823 REMARK 3 L13: 1.3569 L23: -0.5337 REMARK 3 S TENSOR REMARK 3 S11: 0.1480 S12: -0.7915 S13: -0.3753 REMARK 3 S21: 0.1034 S22: 0.3042 S23: 0.0597 REMARK 3 S31: 0.2747 S32: -0.4895 S33: -0.1895 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: chain 'B' and (resseq 206:235) REMARK 3 ORIGIN FOR THE GROUP (A): 41.6916 -39.3226 22.0706 REMARK 3 T TENSOR REMARK 3 T11: 0.2797 T22: 0.7776 REMARK 3 T33: 0.4995 T12: 0.2241 REMARK 3 T13: 0.0586 T23: 0.3107 REMARK 3 L TENSOR REMARK 3 L11: 2.1152 L22: 3.4343 REMARK 3 L33: 0.0542 L12: 1.1395 REMARK 3 L13: -0.2550 L23: 0.1220 REMARK 3 S TENSOR REMARK 3 S11: -0.0904 S12: -0.7990 S13: -0.1995 REMARK 3 S21: -0.1453 S22: 0.0049 S23: -0.2878 REMARK 3 S31: -0.0160 S32: 0.5211 S33: 0.4416 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3S58 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-11. REMARK 100 THE RCSB ID CODE IS RCSB065776. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13817 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 10.000 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.65300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CJJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG6000, 0.1 M TRIS-HCL, PH 7.4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.79567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 149.59133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 112.19350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 186.98917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.39783 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 465 VAL A 21 REMARK 465 ASP A 22 REMARK 465 PRO A 234 REMARK 465 LEU A 235 REMARK 465 GLU A 236 REMARK 465 GLU A 237 REMARK 465 ALA A 238 REMARK 465 ALA A 239 REMARK 465 ALA A 240 REMARK 465 SER A 241 REMARK 465 GLY B 19 REMARK 465 SER B 20 REMARK 465 GLU B 236 REMARK 465 GLU B 237 REMARK 465 ALA B 238 REMARK 465 ALA B 239 REMARK 465 ALA B 240 REMARK 465 SER B 241 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 103 -73.43 -51.12 REMARK 500 ARG A 104 -81.89 -124.80 REMARK 500 ASN A 167 -13.97 74.31 REMARK 500 PRO A 215 49.97 -71.33 REMARK 500 ALA B 60 -76.19 -125.31 REMARK 500 VAL B 75 -66.41 -125.56 REMARK 500 PRO B 151 -173.77 -63.56 REMARK 500 ASN B 167 -9.89 71.12 REMARK 500 PRO B 215 48.92 -74.27 REMARK 500 HIS B 217 178.37 177.61 REMARK 500 GLN B 226 68.42 -118.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 3 DBREF 3S58 A 23 237 UNP Q15109 RAGE_HUMAN 23 237 DBREF 3S58 B 23 237 UNP Q15109 RAGE_HUMAN 23 237 DBREF 3S58 E 1 22 PDB 3S58 3S58 1 22 DBREF 3S58 F 1 22 PDB 3S58 3S58 1 22 SEQADV 3S58 GLY A 19 UNP Q15109 EXPRESSION TAG SEQADV 3S58 SER A 20 UNP Q15109 EXPRESSION TAG SEQADV 3S58 VAL A 21 UNP Q15109 EXPRESSION TAG SEQADV 3S58 ASP A 22 UNP Q15109 EXPRESSION TAG SEQADV 3S58 ALA A 238 UNP Q15109 EXPRESSION TAG SEQADV 3S58 ALA A 239 UNP Q15109 EXPRESSION TAG SEQADV 3S58 ALA A 240 UNP Q15109 EXPRESSION TAG SEQADV 3S58 SER A 241 UNP Q15109 EXPRESSION TAG SEQADV 3S58 GLY B 19 UNP Q15109 EXPRESSION TAG SEQADV 3S58 SER B 20 UNP Q15109 EXPRESSION TAG SEQADV 3S58 VAL B 21 UNP Q15109 EXPRESSION TAG SEQADV 3S58 ASP B 22 UNP Q15109 EXPRESSION TAG SEQADV 3S58 ALA B 238 UNP Q15109 EXPRESSION TAG SEQADV 3S58 ALA B 239 UNP Q15109 EXPRESSION TAG SEQADV 3S58 ALA B 240 UNP Q15109 EXPRESSION TAG SEQADV 3S58 SER B 241 UNP Q15109 EXPRESSION TAG SEQRES 1 A 223 GLY SER VAL ASP ALA GLN ASN ILE THR ALA ARG ILE GLY SEQRES 2 A 223 GLU PRO LEU VAL LEU LYS CYS LYS GLY ALA PRO LYS LYS SEQRES 3 A 223 PRO PRO GLN ARG LEU GLU TRP LYS LEU ASN THR GLY ARG SEQRES 4 A 223 THR GLU ALA TRP LYS VAL LEU SER PRO GLN GLY GLY GLY SEQRES 5 A 223 PRO TRP ASP SER VAL ALA ARG VAL LEU PRO ASN GLY SER SEQRES 6 A 223 LEU PHE LEU PRO ALA VAL GLY ILE GLN ASP GLU GLY ILE SEQRES 7 A 223 PHE ARG CYS GLN ALA MET ASN ARG ASN GLY LYS GLU THR SEQRES 8 A 223 LYS SER ASN TYR ARG VAL ARG VAL TYR GLN ILE PRO GLY SEQRES 9 A 223 LYS PRO GLU ILE VAL ASP SER ALA SER GLU LEU THR ALA SEQRES 10 A 223 GLY VAL PRO ASN LYS VAL GLY THR CYS VAL SER GLU GLY SEQRES 11 A 223 SER TYR PRO ALA GLY THR LEU SER TRP HIS LEU ASP GLY SEQRES 12 A 223 LYS PRO LEU VAL PRO ASN GLU LYS GLY VAL SER VAL LYS SEQRES 13 A 223 GLU GLN THR ARG ARG HIS PRO GLU THR GLY LEU PHE THR SEQRES 14 A 223 LEU GLN SER GLU LEU MET VAL THR PRO ALA ARG GLY GLY SEQRES 15 A 223 ASP PRO ARG PRO THR PHE SER CYS SER PHE SER PRO GLY SEQRES 16 A 223 LEU PRO ARG HIS ARG ALA LEU ARG THR ALA PRO ILE GLN SEQRES 17 A 223 PRO ARG VAL TRP GLU PRO VAL PRO LEU GLU GLU ALA ALA SEQRES 18 A 223 ALA SER SEQRES 1 B 223 GLY SER VAL ASP ALA GLN ASN ILE THR ALA ARG ILE GLY SEQRES 2 B 223 GLU PRO LEU VAL LEU LYS CYS LYS GLY ALA PRO LYS LYS SEQRES 3 B 223 PRO PRO GLN ARG LEU GLU TRP LYS LEU ASN THR GLY ARG SEQRES 4 B 223 THR GLU ALA TRP LYS VAL LEU SER PRO GLN GLY GLY GLY SEQRES 5 B 223 PRO TRP ASP SER VAL ALA ARG VAL LEU PRO ASN GLY SER SEQRES 6 B 223 LEU PHE LEU PRO ALA VAL GLY ILE GLN ASP GLU GLY ILE SEQRES 7 B 223 PHE ARG CYS GLN ALA MET ASN ARG ASN GLY LYS GLU THR SEQRES 8 B 223 LYS SER ASN TYR ARG VAL ARG VAL TYR GLN ILE PRO GLY SEQRES 9 B 223 LYS PRO GLU ILE VAL ASP SER ALA SER GLU LEU THR ALA SEQRES 10 B 223 GLY VAL PRO ASN LYS VAL GLY THR CYS VAL SER GLU GLY SEQRES 11 B 223 SER TYR PRO ALA GLY THR LEU SER TRP HIS LEU ASP GLY SEQRES 12 B 223 LYS PRO LEU VAL PRO ASN GLU LYS GLY VAL SER VAL LYS SEQRES 13 B 223 GLU GLN THR ARG ARG HIS PRO GLU THR GLY LEU PHE THR SEQRES 14 B 223 LEU GLN SER GLU LEU MET VAL THR PRO ALA ARG GLY GLY SEQRES 15 B 223 ASP PRO ARG PRO THR PHE SER CYS SER PHE SER PRO GLY SEQRES 16 B 223 LEU PRO ARG HIS ARG ALA LEU ARG THR ALA PRO ILE GLN SEQRES 17 B 223 PRO ARG VAL TRP GLU PRO VAL PRO LEU GLU GLU ALA ALA SEQRES 18 B 223 ALA SER SEQRES 1 E 22 DC DT DG DC DA DA DC DG DA DT DG DC DT SEQRES 2 E 22 DA DC DG DA DA DC DG DT DG SEQRES 1 F 22 DC DA DC DG DT DT DC DG DT DA DG DC DA SEQRES 2 F 22 DT DC DG DT DT DG DC DA DG HET EDO A 1 4 HET EDO A 2 4 HET EDO A 4 4 HET EDO B 3 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 EDO 4(C2 H6 O2) FORMUL 9 HOH *45(H2 O) HELIX 1 1 GLY A 70 VAL A 75 5 6 HELIX 2 2 GLY A 90 ASP A 93 5 4 HELIX 3 3 GLY B 70 VAL B 75 5 6 HELIX 4 4 GLY B 90 ASP B 93 5 4 SHEET 1 A 5 GLN A 24 ARG A 29 0 SHEET 2 A 5 GLU A 108 TYR A 118 1 O ASN A 112 N GLN A 24 SHEET 3 A 5 GLY A 95 MET A 102 -1 N CYS A 99 O SER A 111 SHEET 4 A 5 ARG A 48 THR A 55 -1 N ASN A 54 O ILE A 96 SHEET 5 A 5 LYS A 62 LEU A 64 -1 O LYS A 62 N LEU A 53 SHEET 1 B 3 LEU A 34 LEU A 36 0 SHEET 2 B 3 LEU A 84 LEU A 86 -1 O LEU A 86 N LEU A 34 SHEET 3 B 3 ARG A 77 VAL A 78 -1 N ARG A 77 O PHE A 85 SHEET 1 C 4 GLY A 122 VAL A 127 0 SHEET 2 C 4 ASN A 139 SER A 149 -1 O VAL A 145 N GLU A 125 SHEET 3 C 4 PHE A 186 VAL A 194 -1 O SER A 190 N CYS A 144 SHEET 4 C 4 VAL A 171 ARG A 179 -1 N ARG A 178 O THR A 187 SHEET 1 D 2 GLU A 132 THR A 134 0 SHEET 2 D 2 ARG A 228 TRP A 230 1 O TRP A 230 N LEU A 133 SHEET 1 E 4 LYS A 162 PRO A 163 0 SHEET 2 E 4 THR A 154 LEU A 159 -1 N LEU A 159 O LYS A 162 SHEET 3 E 4 PHE A 206 SER A 211 -1 O SER A 211 N THR A 154 SHEET 4 E 4 LEU A 220 ARG A 221 -1 O LEU A 220 N PHE A 210 SHEET 1 F 5 GLN B 24 ARG B 29 0 SHEET 2 F 5 GLU B 108 TYR B 118 1 O ARG B 114 N ILE B 26 SHEET 3 F 5 GLY B 95 MET B 102 -1 N PHE B 97 O TYR B 113 SHEET 4 F 5 LEU B 49 THR B 55 -1 N LYS B 52 O ARG B 98 SHEET 5 F 5 LYS B 62 LEU B 64 -1 O LYS B 62 N LEU B 53 SHEET 1 G 3 LEU B 34 LEU B 36 0 SHEET 2 G 3 LEU B 84 LEU B 86 -1 O LEU B 84 N LEU B 36 SHEET 3 G 3 ARG B 77 VAL B 78 -1 N ARG B 77 O PHE B 85 SHEET 1 H 4 GLU B 125 VAL B 127 0 SHEET 2 H 4 LYS B 140 SER B 149 -1 O THR B 143 N VAL B 127 SHEET 3 H 4 PHE B 186 MET B 193 -1 O LEU B 188 N SER B 146 SHEET 4 H 4 SER B 172 ARG B 179 -1 N ARG B 178 O THR B 187 SHEET 1 I 2 GLU B 132 THR B 134 0 SHEET 2 I 2 ARG B 228 TRP B 230 1 O TRP B 230 N LEU B 133 SHEET 1 J 4 LYS B 162 PRO B 163 0 SHEET 2 J 4 THR B 154 LEU B 159 -1 N LEU B 159 O LYS B 162 SHEET 3 J 4 PHE B 206 SER B 211 -1 O SER B 209 N SER B 156 SHEET 4 J 4 LEU B 220 ARG B 221 -1 O LEU B 220 N PHE B 210 SSBOND 1 CYS A 38 CYS A 99 1555 1555 2.03 SSBOND 2 CYS A 144 CYS A 208 1555 1555 2.03 SSBOND 3 CYS B 38 CYS B 99 1555 1555 2.03 SSBOND 4 CYS B 144 CYS B 208 1555 1555 2.03 CISPEP 1 PRO A 45 PRO A 46 0 -13.98 CISPEP 2 ASN A 105 GLY A 106 0 -14.33 CISPEP 3 TYR A 150 PRO A 151 0 -12.40 CISPEP 4 PRO B 45 PRO B 46 0 -8.21 CISPEP 5 ARG B 104 ASN B 105 0 -5.29 CISPEP 6 ASN B 105 GLY B 106 0 -1.92 CISPEP 7 TYR B 150 PRO B 151 0 -10.33 SITE 1 AC1 3 ARG A 221 GLY B 56 THR B 58 SITE 1 AC2 1 ARG A 77 SITE 1 AC3 3 GLN A 92 GLU A 182 THR A 183 SITE 1 AC4 3 ASP A 160 ARG B 57 TRP B 72 CRYST1 77.920 77.920 224.387 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012834 0.007410 0.000000 0.00000 SCALE2 0.000000 0.014819 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004457 0.00000