HEADER TRANSPORT PROTEIN,SIGNALING PROTEIN/DNA 21-MAY-11 3S59 OBSLTE 30-APR-14 3S59 4OI8 TITLE RAGE RECOGNIZES NUCLEIC ACIDS AND PROMOTES INFLAMMATORY RESPONSES TO TITLE 2 DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADVANCED GLYCOSYLATION END PRODUCT-SPECIFIC RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RAGE V-C1 DOMAIN, RESIDUES 21-237; COMPND 5 SYNONYM: RECEPTOR FOR ADVANCED GLYCOSYLATION END PRODUCTS; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*CP*CP*AP*TP*GP*AP*CP*TP*GP*TP*GP*AP*GP*AP*AP*AP*CP*TP COMPND 9 *CP*TP*AP*G)-3'; COMPND 10 CHAIN: E; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*GP*CP*TP*AP*GP*AP*GP*TP*TP*TP*CP*TP*CP*AP*CP*AP*GP*TP COMPND 14 *CP*AP*TP*G)-3'; COMPND 15 CHAIN: F; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AGER, RAGE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: COMMERCIALLY SYNTHESIZED; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 OTHER_DETAILS: COMMERCIALLY SYNTHESIZED KEYWDS IG SUPERFAMILY FOLDER, EXTRACELLULAR RECEPTOR, S100B, AGE, NUCLEIC KEYWDS 2 ACIDS, TRANSPORT PROTEIN,SIGNALING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.C.JIN,T.XIAO REVDAT 2 30-APR-14 3S59 1 OBSLTE REVDAT 1 30-MAY-12 3S59 0 JRNL AUTH T.C.JIN,T.XIAO JRNL TITL RAGE RECOGNIZES NUCLEIC ACIDS AND PROMOTES INFLAMMATORY JRNL TITL 2 RESPONSES TO DNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_736) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 19237 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.4233 - 5.3457 0.94 2612 131 0.1725 0.2186 REMARK 3 2 5.3457 - 4.2525 0.95 2625 150 0.1531 0.1983 REMARK 3 3 4.2525 - 3.7178 0.95 2611 133 0.1848 0.2306 REMARK 3 4 3.7178 - 3.3791 0.94 2609 152 0.2145 0.2376 REMARK 3 5 3.3791 - 3.1376 0.95 2610 141 0.2430 0.2925 REMARK 3 6 3.1376 - 2.9530 0.94 2604 148 0.2945 0.3658 REMARK 3 7 2.9530 - 2.8054 0.93 2549 135 0.3227 0.3919 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 76.43 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.73720 REMARK 3 B22 (A**2) : 5.73720 REMARK 3 B33 (A**2) : -11.47440 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4425 REMARK 3 ANGLE : 0.982 6118 REMARK 3 CHIRALITY : 0.058 666 REMARK 3 PLANARITY : 0.006 649 REMARK 3 DIHEDRAL : 21.960 1726 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resseq 23:115) REMARK 3 ORIGIN FOR THE GROUP (A): 36.3695 -7.9215 -8.2015 REMARK 3 T TENSOR REMARK 3 T11: 0.4973 T22: 0.2445 REMARK 3 T33: 0.1187 T12: 0.1335 REMARK 3 T13: 0.0775 T23: -0.0486 REMARK 3 L TENSOR REMARK 3 L11: 5.9821 L22: 3.6062 REMARK 3 L33: 3.7149 L12: 0.4496 REMARK 3 L13: -0.9208 L23: 0.0690 REMARK 3 S TENSOR REMARK 3 S11: 0.1043 S12: -0.4407 S13: 0.4052 REMARK 3 S21: 0.6496 S22: 0.0182 S23: -0.2063 REMARK 3 S31: -0.2631 S32: -0.2481 S33: -0.0922 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resseq 116:233) REMARK 3 ORIGIN FOR THE GROUP (A): 53.2016 -12.2806 -45.2394 REMARK 3 T TENSOR REMARK 3 T11: 0.5066 T22: 0.4533 REMARK 3 T33: 0.1599 T12: 0.1995 REMARK 3 T13: 0.1959 T23: 0.0917 REMARK 3 L TENSOR REMARK 3 L11: 2.7083 L22: 2.2419 REMARK 3 L33: 6.7964 L12: -1.0191 REMARK 3 L13: -3.1340 L23: 0.7971 REMARK 3 S TENSOR REMARK 3 S11: 0.3524 S12: 0.0136 S13: 0.2569 REMARK 3 S21: -0.2634 S22: -0.0745 S23: -0.0748 REMARK 3 S31: -0.4796 S32: 0.2406 S33: -0.2698 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'B' and (resseq 22:94) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5252 -25.9930 -14.7516 REMARK 3 T TENSOR REMARK 3 T11: 0.0948 T22: 0.4032 REMARK 3 T33: 0.1418 T12: -0.0471 REMARK 3 T13: 0.0904 T23: 0.1427 REMARK 3 L TENSOR REMARK 3 L11: 1.9155 L22: 3.1681 REMARK 3 L33: 4.1953 L12: 1.3029 REMARK 3 L13: -0.4313 L23: -1.5293 REMARK 3 S TENSOR REMARK 3 S11: -0.0478 S12: 0.1221 S13: 0.0125 REMARK 3 S21: -0.4689 S22: 0.1402 S23: -0.0142 REMARK 3 S31: 0.2249 S32: -0.3985 S33: -0.0395 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'B' and (resseq 95:137) REMARK 3 ORIGIN FOR THE GROUP (A): 31.3032 -34.2589 -2.4024 REMARK 3 T TENSOR REMARK 3 T11: -0.1062 T22: -0.0339 REMARK 3 T33: -0.0512 T12: 0.0545 REMARK 3 T13: 0.1059 T23: 0.0457 REMARK 3 L TENSOR REMARK 3 L11: 2.1263 L22: 1.3762 REMARK 3 L33: 3.4994 L12: 0.0704 REMARK 3 L13: 0.5387 L23: -0.0320 REMARK 3 S TENSOR REMARK 3 S11: -0.0765 S12: -0.0016 S13: -0.1934 REMARK 3 S21: -0.1412 S22: -0.0753 S23: -0.0609 REMARK 3 S31: -0.0617 S32: -0.0396 S33: -0.1343 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'B' and (resseq 138:185) REMARK 3 ORIGIN FOR THE GROUP (A): 33.2036 -40.9243 17.5330 REMARK 3 T TENSOR REMARK 3 T11: 0.1798 T22: 0.5720 REMARK 3 T33: 0.3100 T12: -0.0245 REMARK 3 T13: -0.0853 T23: 0.2642 REMARK 3 L TENSOR REMARK 3 L11: 1.3453 L22: 1.1692 REMARK 3 L33: 3.5454 L12: 1.0672 REMARK 3 L13: 0.4514 L23: -0.6953 REMARK 3 S TENSOR REMARK 3 S11: 0.1938 S12: -0.8062 S13: -0.3792 REMARK 3 S21: 0.0041 S22: 0.1334 S23: 0.0961 REMARK 3 S31: 0.4047 S32: -0.4187 S33: -0.1370 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain 'B' and (resseq 186:235) REMARK 3 ORIGIN FOR THE GROUP (A): 41.3364 -41.4214 23.7440 REMARK 3 T TENSOR REMARK 3 T11: 0.3647 T22: 0.8705 REMARK 3 T33: 0.3725 T12: 0.0186 REMARK 3 T13: 0.0105 T23: 0.3748 REMARK 3 L TENSOR REMARK 3 L11: 1.5686 L22: 3.7253 REMARK 3 L33: 6.6417 L12: -0.5676 REMARK 3 L13: 1.5786 L23: -3.1312 REMARK 3 S TENSOR REMARK 3 S11: -0.0331 S12: -0.6116 S13: -0.4113 REMARK 3 S21: 0.0061 S22: -0.0732 S23: -0.2751 REMARK 3 S31: 0.3280 S32: 0.2297 S33: 0.0468 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: chain 'E' REMARK 3 ORIGIN FOR THE GROUP (A): 50.4430 -25.9376 -8.5077 REMARK 3 T TENSOR REMARK 3 T11: 2.5083 T22: 2.0422 REMARK 3 T33: 2.2765 T12: -0.4768 REMARK 3 T13: -0.2542 T23: 0.5853 REMARK 3 L TENSOR REMARK 3 L11: 2.2075 L22: 4.4264 REMARK 3 L33: 0.4399 L12: -0.8665 REMARK 3 L13: -0.7895 L23: 1.1103 REMARK 3 S TENSOR REMARK 3 S11: 0.8095 S12: 0.1212 S13: 1.1160 REMARK 3 S21: 1.3766 S22: -0.8568 S23: -2.0114 REMARK 3 S31: -0.2687 S32: 1.1356 S33: 0.0488 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: chain 'F' REMARK 3 ORIGIN FOR THE GROUP (A): 48.9524 -27.6840 -12.5271 REMARK 3 T TENSOR REMARK 3 T11: 1.7306 T22: 2.0077 REMARK 3 T33: 2.9012 T12: 0.1371 REMARK 3 T13: -0.0222 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.7248 L22: 2.8730 REMARK 3 L33: 3.1260 L12: -0.1269 REMARK 3 L13: -0.4693 L23: 1.6822 REMARK 3 S TENSOR REMARK 3 S11: -0.4273 S12: -0.1758 S13: -0.0713 REMARK 3 S21: -0.2594 S22: -0.1022 S23: 1.0712 REMARK 3 S31: 0.1221 S32: -0.1643 S33: 0.5152 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3S59 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-11. REMARK 100 THE RCSB ID CODE IS RCSB065777. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19330 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.60700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: P REMARK 200 STARTING MODEL: 3CJJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG6000, 0.1 M TRIS_HCL PH 7.4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.68167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 149.36333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 112.02250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 186.70417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.34083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, F, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 465 VAL A 21 REMARK 465 ASP A 22 REMARK 465 PRO A 234 REMARK 465 LEU A 235 REMARK 465 GLU A 236 REMARK 465 GLU A 237 REMARK 465 ALA A 238 REMARK 465 ALA A 239 REMARK 465 ALA A 240 REMARK 465 SER A 241 REMARK 465 GLY B 19 REMARK 465 SER B 20 REMARK 465 VAL B 21 REMARK 465 GLU B 236 REMARK 465 GLU B 237 REMARK 465 ALA B 238 REMARK 465 ALA B 239 REMARK 465 ALA B 240 REMARK 465 SER B 241 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 75 -66.84 -103.41 REMARK 500 ASN A 103 -74.54 -52.25 REMARK 500 ARG A 104 -81.10 -126.93 REMARK 500 PRO A 151 -178.56 -64.98 REMARK 500 ASN A 167 -13.17 77.10 REMARK 500 ALA B 60 -78.56 -123.13 REMARK 500 PRO B 151 -175.76 -63.98 REMARK 500 ASN B 167 -4.49 72.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3S58 RELATED DB: PDB DBREF 3S59 A 23 237 UNP Q15109 RAGE_HUMAN 23 237 DBREF 3S59 B 23 237 UNP Q15109 RAGE_HUMAN 23 237 DBREF 3S59 E 1 22 PDB 3S59 3S59 1 22 DBREF 3S59 F 1 22 PDB 3S59 3S59 1 22 SEQADV 3S59 GLY A 19 UNP Q15109 EXPRESSION TAG SEQADV 3S59 SER A 20 UNP Q15109 EXPRESSION TAG SEQADV 3S59 VAL A 21 UNP Q15109 EXPRESSION TAG SEQADV 3S59 ASP A 22 UNP Q15109 EXPRESSION TAG SEQADV 3S59 ALA A 238 UNP Q15109 EXPRESSION TAG SEQADV 3S59 ALA A 239 UNP Q15109 EXPRESSION TAG SEQADV 3S59 ALA A 240 UNP Q15109 EXPRESSION TAG SEQADV 3S59 SER A 241 UNP Q15109 EXPRESSION TAG SEQADV 3S59 GLY B 19 UNP Q15109 EXPRESSION TAG SEQADV 3S59 SER B 20 UNP Q15109 EXPRESSION TAG SEQADV 3S59 VAL B 21 UNP Q15109 EXPRESSION TAG SEQADV 3S59 ASP B 22 UNP Q15109 EXPRESSION TAG SEQADV 3S59 ALA B 238 UNP Q15109 EXPRESSION TAG SEQADV 3S59 ALA B 239 UNP Q15109 EXPRESSION TAG SEQADV 3S59 ALA B 240 UNP Q15109 EXPRESSION TAG SEQADV 3S59 SER B 241 UNP Q15109 EXPRESSION TAG SEQRES 1 A 223 GLY SER VAL ASP ALA GLN ASN ILE THR ALA ARG ILE GLY SEQRES 2 A 223 GLU PRO LEU VAL LEU LYS CYS LYS GLY ALA PRO LYS LYS SEQRES 3 A 223 PRO PRO GLN ARG LEU GLU TRP LYS LEU ASN THR GLY ARG SEQRES 4 A 223 THR GLU ALA TRP LYS VAL LEU SER PRO GLN GLY GLY GLY SEQRES 5 A 223 PRO TRP ASP SER VAL ALA ARG VAL LEU PRO ASN GLY SER SEQRES 6 A 223 LEU PHE LEU PRO ALA VAL GLY ILE GLN ASP GLU GLY ILE SEQRES 7 A 223 PHE ARG CYS GLN ALA MET ASN ARG ASN GLY LYS GLU THR SEQRES 8 A 223 LYS SER ASN TYR ARG VAL ARG VAL TYR GLN ILE PRO GLY SEQRES 9 A 223 LYS PRO GLU ILE VAL ASP SER ALA SER GLU LEU THR ALA SEQRES 10 A 223 GLY VAL PRO ASN LYS VAL GLY THR CYS VAL SER GLU GLY SEQRES 11 A 223 SER TYR PRO ALA GLY THR LEU SER TRP HIS LEU ASP GLY SEQRES 12 A 223 LYS PRO LEU VAL PRO ASN GLU LYS GLY VAL SER VAL LYS SEQRES 13 A 223 GLU GLN THR ARG ARG HIS PRO GLU THR GLY LEU PHE THR SEQRES 14 A 223 LEU GLN SER GLU LEU MET VAL THR PRO ALA ARG GLY GLY SEQRES 15 A 223 ASP PRO ARG PRO THR PHE SER CYS SER PHE SER PRO GLY SEQRES 16 A 223 LEU PRO ARG HIS ARG ALA LEU ARG THR ALA PRO ILE GLN SEQRES 17 A 223 PRO ARG VAL TRP GLU PRO VAL PRO LEU GLU GLU ALA ALA SEQRES 18 A 223 ALA SER SEQRES 1 B 223 GLY SER VAL ASP ALA GLN ASN ILE THR ALA ARG ILE GLY SEQRES 2 B 223 GLU PRO LEU VAL LEU LYS CYS LYS GLY ALA PRO LYS LYS SEQRES 3 B 223 PRO PRO GLN ARG LEU GLU TRP LYS LEU ASN THR GLY ARG SEQRES 4 B 223 THR GLU ALA TRP LYS VAL LEU SER PRO GLN GLY GLY GLY SEQRES 5 B 223 PRO TRP ASP SER VAL ALA ARG VAL LEU PRO ASN GLY SER SEQRES 6 B 223 LEU PHE LEU PRO ALA VAL GLY ILE GLN ASP GLU GLY ILE SEQRES 7 B 223 PHE ARG CYS GLN ALA MET ASN ARG ASN GLY LYS GLU THR SEQRES 8 B 223 LYS SER ASN TYR ARG VAL ARG VAL TYR GLN ILE PRO GLY SEQRES 9 B 223 LYS PRO GLU ILE VAL ASP SER ALA SER GLU LEU THR ALA SEQRES 10 B 223 GLY VAL PRO ASN LYS VAL GLY THR CYS VAL SER GLU GLY SEQRES 11 B 223 SER TYR PRO ALA GLY THR LEU SER TRP HIS LEU ASP GLY SEQRES 12 B 223 LYS PRO LEU VAL PRO ASN GLU LYS GLY VAL SER VAL LYS SEQRES 13 B 223 GLU GLN THR ARG ARG HIS PRO GLU THR GLY LEU PHE THR SEQRES 14 B 223 LEU GLN SER GLU LEU MET VAL THR PRO ALA ARG GLY GLY SEQRES 15 B 223 ASP PRO ARG PRO THR PHE SER CYS SER PHE SER PRO GLY SEQRES 16 B 223 LEU PRO ARG HIS ARG ALA LEU ARG THR ALA PRO ILE GLN SEQRES 17 B 223 PRO ARG VAL TRP GLU PRO VAL PRO LEU GLU GLU ALA ALA SEQRES 18 B 223 ALA SER SEQRES 1 E 22 DC DC DA DT DG DA DC DT DG DT DG DA DG SEQRES 2 E 22 DA DA DA DC DT DC DT DA DG SEQRES 1 F 22 DG DC DT DA DG DA DG DT DT DT DC DT DC SEQRES 2 F 22 DA DC DA DG DT DC DA DT DG HET EDO A 1 4 HET EDO A 4 4 HET EDO B 2 4 HET EDO B 3 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 EDO 4(C2 H6 O2) FORMUL 9 HOH *59(H2 O) HELIX 1 1 GLY A 70 VAL A 75 5 6 HELIX 2 2 GLY A 90 GLU A 94 5 5 HELIX 3 3 GLY B 70 VAL B 75 5 6 HELIX 4 4 GLY B 90 ASP B 93 5 4 SHEET 1 A 5 GLN A 24 ILE A 26 0 SHEET 2 A 5 GLU A 108 VAL A 115 1 O ARG A 114 N GLN A 24 SHEET 3 A 5 GLY A 95 MET A 102 -1 N CYS A 99 O SER A 111 SHEET 4 A 5 ARG A 48 ASN A 54 -1 N ARG A 48 O MET A 102 SHEET 5 A 5 LYS A 62 LEU A 64 -1 O LYS A 62 N LEU A 53 SHEET 1 B 3 LEU A 34 LEU A 36 0 SHEET 2 B 3 LEU A 84 LEU A 86 -1 O LEU A 84 N LEU A 36 SHEET 3 B 3 ARG A 77 VAL A 78 -1 N ARG A 77 O PHE A 85 SHEET 1 C 4 GLY A 122 VAL A 127 0 SHEET 2 C 4 ASN A 139 SER A 149 -1 O GLU A 147 N GLY A 122 SHEET 3 C 4 PHE A 186 VAL A 194 -1 O SER A 190 N CYS A 144 SHEET 4 C 4 SER A 172 ARG A 179 -1 N GLN A 176 O GLN A 189 SHEET 1 D 2 GLU A 132 THR A 134 0 SHEET 2 D 2 ARG A 228 TRP A 230 1 O TRP A 230 N LEU A 133 SHEET 1 E 4 LYS A 162 PRO A 163 0 SHEET 2 E 4 THR A 154 LEU A 159 -1 N LEU A 159 O LYS A 162 SHEET 3 E 4 PHE A 206 SER A 211 -1 O SER A 209 N SER A 156 SHEET 4 E 4 LEU A 220 ARG A 221 -1 O LEU A 220 N PHE A 210 SHEET 1 F 5 GLN B 24 ARG B 29 0 SHEET 2 F 5 GLU B 108 TYR B 118 1 O ARG B 114 N GLN B 24 SHEET 3 F 5 GLY B 95 MET B 102 -1 N PHE B 97 O TYR B 113 SHEET 4 F 5 LEU B 49 THR B 55 -1 N LYS B 52 O ARG B 98 SHEET 5 F 5 LYS B 62 LEU B 64 -1 O LEU B 64 N TRP B 51 SHEET 1 G 3 LEU B 34 LEU B 36 0 SHEET 2 G 3 LEU B 84 LEU B 86 -1 O LEU B 84 N LEU B 36 SHEET 3 G 3 ARG B 77 VAL B 78 -1 N ARG B 77 O PHE B 85 SHEET 1 H 4 GLU B 125 VAL B 127 0 SHEET 2 H 4 ASN B 139 SER B 149 -1 O THR B 143 N VAL B 127 SHEET 3 H 4 PHE B 186 VAL B 194 -1 O LEU B 192 N VAL B 141 SHEET 4 H 4 SER B 172 ARG B 179 -1 N ARG B 178 O THR B 187 SHEET 1 I 2 GLU B 132 THR B 134 0 SHEET 2 I 2 ARG B 228 TRP B 230 1 O ARG B 228 N LEU B 133 SHEET 1 J 4 LYS B 162 PRO B 163 0 SHEET 2 J 4 THR B 154 LEU B 159 -1 N LEU B 159 O LYS B 162 SHEET 3 J 4 PHE B 206 SER B 211 -1 O SER B 211 N THR B 154 SHEET 4 J 4 LEU B 220 ARG B 221 -1 O LEU B 220 N PHE B 210 SSBOND 1 CYS A 38 CYS A 99 1555 1555 2.03 SSBOND 2 CYS A 144 CYS A 208 1555 1555 2.03 SSBOND 3 CYS B 38 CYS B 99 1555 1555 2.03 SSBOND 4 CYS B 144 CYS B 208 1555 1555 2.03 CISPEP 1 PRO A 45 PRO A 46 0 -15.12 CISPEP 2 ASN A 105 GLY A 106 0 -16.58 CISPEP 3 TYR A 150 PRO A 151 0 -12.44 CISPEP 4 PRO B 45 PRO B 46 0 -13.94 CISPEP 5 ARG B 104 ASN B 105 0 -5.27 CISPEP 6 ASN B 105 GLY B 106 0 -1.25 CISPEP 7 TYR B 150 PRO B 151 0 -10.80 SITE 1 AC1 3 ARG A 221 GLY B 56 THR B 58 SITE 1 AC2 3 GLN A 92 GLU A 182 THR A 183 SITE 1 AC3 4 ARG A 77 SER B 74 PRO B 87 HOH B 260 SITE 1 AC4 2 ASP A 160 TRP B 72 CRYST1 79.121 79.121 224.045 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012639 0.007297 0.000000 0.00000 SCALE2 0.000000 0.014594 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004463 0.00000