HEADER HYDROLASE 23-MAY-11 3S5I TITLE CRYSTAL STRUCTURES OF FALCILYSIN, A M16 METALLOPROTEASE FROM THE TITLE 2 MALARIA PARASITE PLASMODIUM FALCIPARUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: FALCILYSIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 137071; SOURCE 4 STRAIN: HB3; SOURCE 5 GENE: FLN, PF13_0322; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PALSMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26 KEYWDS M16 METALLOPROTEASE, PEPTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.MORGUNOVA,M.PONPUAK,E.ISTVAN,A.POPOV,D.GOLDBERG,T.ENEQVIST REVDAT 4 13-SEP-23 3S5I 1 REMARK REVDAT 3 31-JAN-18 3S5I 1 REMARK REVDAT 2 08-NOV-17 3S5I 1 REMARK REVDAT 1 23-MAY-12 3S5I 0 JRNL AUTH E.MORGUNOVA,M.PONPUAK,E.ISTVAN,A.POPOV,D.GOLDBERG,T.ENEQVIST JRNL TITL CRYSTAL STRUCTURES OF FALCILYSIN, A M16 METALLOPROTEASE FROM JRNL TITL 2 THE MALARIA PARASITE PLASMODIUM FALCIPARUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6_289) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.320 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 255661 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.020 REMARK 3 FREE R VALUE TEST SET COUNT : 7724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.4014 - 3.7537 1.00 24802 769 0.1495 0.1791 REMARK 3 2 3.7537 - 2.9800 1.00 24847 764 0.1497 0.1776 REMARK 3 3 2.9800 - 2.6034 1.00 24801 782 0.1437 0.1855 REMARK 3 4 2.6034 - 2.3655 1.00 24892 690 0.1391 0.1923 REMARK 3 5 2.3655 - 2.1960 1.00 24838 751 0.1426 0.2023 REMARK 3 6 2.1960 - 2.0665 1.00 24761 799 0.1478 0.2046 REMARK 3 7 2.0665 - 1.9630 1.00 24812 773 0.1556 0.2046 REMARK 3 8 1.9630 - 1.8776 1.00 24714 824 0.1691 0.2175 REMARK 3 9 1.8776 - 1.8053 1.00 24831 745 0.1859 0.2421 REMARK 3 10 1.8053 - 1.7430 1.00 24639 827 0.1961 0.2327 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 43.44 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.70220 REMARK 3 B22 (A**2) : 0.23680 REMARK 3 B33 (A**2) : 0.46540 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 9411 REMARK 3 ANGLE : 1.405 12747 REMARK 3 CHIRALITY : 0.106 1399 REMARK 3 PLANARITY : 0.007 1643 REMARK 3 DIHEDRAL : 16.420 3591 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3S5I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065786. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : HORIZONTALLY SIDE DIFFRACTING REMARK 200 SILICON 111 CRYSTAL REMARK 200 OPTICS : PT COATED SI MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 284102 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 35.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 15.10 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 14.90 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2FGE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11% PEG6000, 10%PEG400, 0.1M ADA, 20MM REMARK 280 MG ACETATE, PH 6.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 100K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.17500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.03000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.56000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.03000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.17500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.56000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 LEU A 3 REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 LEU A 6 REMARK 465 MET A 7 REMARK 465 LYS A 8 REMARK 465 VAL A 9 REMARK 465 ILE A 10 REMARK 465 GLY A 11 REMARK 465 TYR A 12 REMARK 465 ILE A 13 REMARK 465 ASN A 14 REMARK 465 ILE A 15 REMARK 465 ILE A 16 REMARK 465 THR A 17 REMARK 465 ASN A 18 REMARK 465 CYS A 19 REMARK 465 VAL A 20 REMARK 465 GLN A 21 REMARK 465 SER A 22 REMARK 465 PHE A 23 REMARK 465 THR A 24 REMARK 465 ASN A 25 REMARK 465 ARG A 26 REMARK 465 ALA A 27 REMARK 465 ASP A 28 REMARK 465 LYS A 29 REMARK 465 LYS A 30 REMARK 465 ARG A 31 REMARK 465 TYR A 32 REMARK 465 ASN A 33 REMARK 465 VAL A 34 REMARK 465 PHE A 35 REMARK 465 ALA A 36 REMARK 465 LYS A 37 REMARK 465 SER A 38 REMARK 465 PHE A 39 REMARK 465 ILE A 40 REMARK 465 ASN A 41 REMARK 465 THR A 42 REMARK 465 ILE A 43 REMARK 465 ASN A 44 REMARK 465 THR A 45 REMARK 465 ASN A 46 REMARK 465 LEU A 47 REMARK 465 TYR A 48 REMARK 465 THR A 49 REMARK 465 PHE A 50 REMARK 465 LYS A 51 REMARK 465 ALA A 52 REMARK 465 VAL A 53 REMARK 465 MET A 54 REMARK 465 SER A 55 REMARK 465 LYS A 56 REMARK 465 LYS A 377 REMARK 465 THR A 378 REMARK 465 ASN A 379 REMARK 465 ASN A 380 REMARK 465 HIS A 381 REMARK 465 ASN A 382 REMARK 465 ASN A 383 REMARK 465 ASN A 384 REMARK 465 HIS A 385 REMARK 465 SER A 386 REMARK 465 ASN A 387 REMARK 465 ASN A 388 REMARK 465 GLN A 389 REMARK 465 SER A 390 REMARK 465 SER A 391 REMARK 465 GLU A 392 REMARK 465 ASN A 393 REMARK 465 ASN A 394 REMARK 465 GLY A 395 REMARK 465 TYR A 396 REMARK 465 SER A 397 REMARK 465 ASN A 398 REMARK 465 ASN A 699 REMARK 465 ASP A 700 REMARK 465 LYS A 701 REMARK 465 HIS A 702 REMARK 465 ASN A 703 REMARK 465 THR A 704 REMARK 465 ASN A 705 REMARK 465 ASN A 706 REMARK 465 ASN A 707 REMARK 465 ASN A 708 REMARK 465 ASN A 709 REMARK 465 ASN A 710 REMARK 465 ASN A 711 REMARK 465 ASN A 712 REMARK 465 ASN A 713 REMARK 465 MET A 714 REMARK 465 ASP A 715 REMARK 465 TYR A 716 REMARK 465 SER A 717 REMARK 465 PHE A 718 REMARK 465 THR A 719 REMARK 465 GLU A 720 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 376 CG OD1 OD2 REMARK 470 SER A 400 OG REMARK 470 HIS A 401 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 402 OG REMARK 470 SER A 403 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 425 HG SER A 429 1.29 REMARK 500 HH TYR A 241 OE2 GLU A 598 1.51 REMARK 500 HD1 HIS A 159 O HOH A 2458 1.53 REMARK 500 HG SER A 864 O HOH A 2753 1.56 REMARK 500 HZ1 LYS A 846 O HOH A 1344 1.58 REMARK 500 HG3 GLN A 324 O HOH A 1919 1.59 REMARK 500 O ASN A 166 HG SER A 273 1.60 REMARK 500 O HIS A 425 OG SER A 429 1.91 REMARK 500 O HOH A 1476 O HOH A 1986 2.03 REMARK 500 O GLU A 359 O HOH A 1250 2.09 REMARK 500 O HOH A 1379 O HOH A 2114 2.12 REMARK 500 O HOH A 1251 O HOH A 1476 2.16 REMARK 500 O HOH A 1328 O HOH A 2425 2.16 REMARK 500 OD1 ASP A 754 O HOH A 1273 2.17 REMARK 500 O HOH A 1379 O HOH A 2290 2.18 REMARK 500 O HOH A 2312 O HOH A 2421 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HA2 GLY A 399 HB THR A 679 2555 1.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 401 CA HIS A 401 CB 0.251 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 172 CG - SD - CE ANGL. DEV. = -9.6 DEGREES REMARK 500 ARG A 539 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 95 -1.25 69.00 REMARK 500 SER A 137 44.41 -92.56 REMARK 500 LEU A 156 38.12 -88.15 REMARK 500 SER A 402 88.35 74.54 REMARK 500 SER A 403 -43.20 -29.94 REMARK 500 THR A 426 155.90 74.62 REMARK 500 ASP A 446 41.39 -106.17 REMARK 500 GLU A 768 25.12 -142.54 REMARK 500 HIS A 802 -123.73 49.49 REMARK 500 LYS A 866 47.63 -153.79 REMARK 500 ASP A 908 65.95 -153.72 REMARK 500 LEU A 943 -60.39 -92.64 REMARK 500 ASN A 966 -3.66 -57.40 REMARK 500 ASP A 967 -94.53 52.30 REMARK 500 MET A 968 8.07 81.78 REMARK 500 GLN A 969 33.61 -93.94 REMARK 500 SER A1036 -90.00 -113.90 REMARK 500 ARG A1067 64.32 39.62 REMARK 500 LEU A1071 -72.24 -146.90 REMARK 500 VAL A1183 -52.47 -127.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 400 HIS A 401 -146.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3S5H RELATED DB: PDB REMARK 900 RELATED ID: 3S5K RELATED DB: PDB REMARK 900 RELATED ID: 3S5M RELATED DB: PDB DBREF 3S5I A 1 1193 UNP Q76NL8 Q76NL8_PLAF7 1 1193 SEQRES 1 A 1193 MET ASN LEU THR LYS LEU MET LYS VAL ILE GLY TYR ILE SEQRES 2 A 1193 ASN ILE ILE THR ASN CYS VAL GLN SER PHE THR ASN ARG SEQRES 3 A 1193 ALA ASP LYS LYS ARG TYR ASN VAL PHE ALA LYS SER PHE SEQRES 4 A 1193 ILE ASN THR ILE ASN THR ASN LEU TYR THR PHE LYS ALA SEQRES 5 A 1193 VAL MET SER LYS THR PRO GLU TRP ILE HIS GLU LYS SER SEQRES 6 A 1193 PRO LYS HIS ASN SER TYR ASP ILE ILE GLU LYS ARG TYR SEQRES 7 A 1193 ASN GLU GLU PHE LYS MET THR TYR THR VAL TYR GLN HIS SEQRES 8 A 1193 LYS LYS ALA LYS THR GLN VAL ILE SER LEU GLY THR ASN SEQRES 9 A 1193 ASP PRO LEU ASP VAL GLU GLN ALA PHE ALA PHE TYR VAL SEQRES 10 A 1193 LYS THR LEU THR HIS SER GLY LYS GLY ILE PRO HIS ILE SEQRES 11 A 1193 LEU GLU HIS SER VAL LEU SER GLY SER LYS ASN TYR ASN SEQRES 12 A 1193 TYR LYS ASN SER ILE GLY LEU LEU GLU LYS GLY THR LEU SEQRES 13 A 1193 HIS THR HIS LEU ASN ALA TYR THR PHE ASN ASP ARG THR SEQRES 14 A 1193 VAL TYR MET ALA GLY SER MET ASN ASN LYS ASP PHE PHE SEQRES 15 A 1193 ASN ILE MET GLY VAL TYR MET ASP SER VAL PHE GLN PRO SEQRES 16 A 1193 ASN VAL LEU GLU ASN LYS TYR ILE PHE GLU THR GLU GLY SEQRES 17 A 1193 TRP THR TYR GLU VAL GLU LYS LEU LYS GLU ASP GLU LYS SEQRES 18 A 1193 GLY LYS ALA GLU ILE PRO GLN MET LYS ASP TYR LYS VAL SEQRES 19 A 1193 SER PHE ASN GLY ILE VAL TYR ASN GLU MET LYS GLY ALA SEQRES 20 A 1193 LEU SER SER PRO LEU GLU ASP LEU TYR HIS GLU GLU MET SEQRES 21 A 1193 LYS TYR MET PHE PRO ASP ASN VAL HIS SER ASN ASN SER SEQRES 22 A 1193 GLY GLY ASP PRO LYS GLU ILE THR ASN LEU THR TYR GLU SEQRES 23 A 1193 GLU PHE LYS GLU PHE TYR TYR LYS ASN TYR ASN PRO LYS SEQRES 24 A 1193 LYS VAL LYS VAL PHE PHE PHE SER LYS ASN ASN PRO THR SEQRES 25 A 1193 GLU LEU LEU ASN PHE VAL ASP GLN TYR LEU GLY GLN LEU SEQRES 26 A 1193 ASP TYR SER LYS TYR ARG ASP ASP ALA VAL GLU SER VAL SEQRES 27 A 1193 GLU TYR GLN THR TYR LYS LYS GLY PRO PHE TYR ILE LYS SEQRES 28 A 1193 LYS LYS TYR GLY ASP HIS SER GLU GLU LYS GLU ASN LEU SEQRES 29 A 1193 VAL SER VAL ALA TRP LEU LEU ASN PRO LYS VAL ASP LYS SEQRES 30 A 1193 THR ASN ASN HIS ASN ASN ASN HIS SER ASN ASN GLN SER SEQRES 31 A 1193 SER GLU ASN ASN GLY TYR SER ASN GLY SER HIS SER SER SEQRES 32 A 1193 ASP LEU SER LEU GLU ASN PRO THR ASP TYR PHE VAL LEU SEQRES 33 A 1193 LEU ILE ILE ASN ASN LEU LEU ILE HIS THR PRO GLU SER SEQRES 34 A 1193 VAL LEU TYR LYS ALA LEU THR ASP CYS GLY LEU GLY ASN SEQRES 35 A 1193 ASN VAL ILE ASP ARG GLY LEU ASN ASP SER LEU VAL GLN SEQRES 36 A 1193 TYR ILE PHE SER ILE GLY LEU LYS GLY ILE LYS ARG ASN SEQRES 37 A 1193 ASN GLU LYS ILE LYS ASN PHE ASP LYS VAL HIS TYR GLU SEQRES 38 A 1193 VAL GLU ASP VAL ILE MET ASN ALA LEU LYS LYS VAL VAL SEQRES 39 A 1193 LYS GLU GLY PHE ASN LYS SER ALA VAL GLU ALA SER ILE SEQRES 40 A 1193 ASN ASN ILE GLU PHE ILE LEU LYS GLU ALA ASN LEU LYS SEQRES 41 A 1193 THR SER LYS SER ILE ASP PHE VAL PHE GLU MET THR SER SEQRES 42 A 1193 LYS LEU ASN TYR ASN ARG ASP PRO LEU LEU ILE PHE GLU SEQRES 43 A 1193 PHE GLU LYS TYR LEU ASN ILE VAL LYS ASN LYS ILE LYS SEQRES 44 A 1193 ASN GLU PRO MET TYR LEU GLU LYS PHE VAL GLU LYS HIS SEQRES 45 A 1193 PHE ILE ASN ASN ALA HIS ARG SER VAL ILE LEU LEU GLU SEQRES 46 A 1193 GLY ASP GLU ASN TYR ALA GLN GLU GLN GLU ASN LEU GLU SEQRES 47 A 1193 LYS GLN GLU LEU LYS LYS ARG ILE GLU ASN PHE ASN GLU SEQRES 48 A 1193 GLN GLU LYS GLU GLN VAL ILE LYS ASN PHE GLU GLU LEU SEQRES 49 A 1193 SER LYS TYR LYS ASN ALA GLU GLU SER PRO GLU HIS LEU SEQRES 50 A 1193 ASN LYS PHE PRO ILE ILE SER ILE SER ASP LEU ASN LYS SEQRES 51 A 1193 LYS THR LEU GLU VAL PRO VAL ASN VAL TYR PHE THR ASN SEQRES 52 A 1193 ILE ASN GLU ASN ASN ASN ILE MET GLU THR TYR ASN LYS SEQRES 53 A 1193 LEU LYS THR ASN GLU HIS MET LEU LYS ASP ASN MET ASP SEQRES 54 A 1193 VAL PHE LEU LYS LYS TYR VAL LEU LYS ASN ASP LYS HIS SEQRES 55 A 1193 ASN THR ASN ASN ASN ASN ASN ASN ASN ASN ASN MET ASP SEQRES 56 A 1193 TYR SER PHE THR GLU THR LYS TYR GLU GLY ASN VAL PRO SEQRES 57 A 1193 ILE LEU VAL TYR GLU MET PRO THR THR GLY ILE VAL TYR SEQRES 58 A 1193 LEU GLN PHE VAL PHE SER LEU ASP HIS LEU THR VAL ASP SEQRES 59 A 1193 GLU LEU ALA TYR LEU ASN LEU PHE LYS THR LEU ILE LEU SEQRES 60 A 1193 GLU ASN LYS THR ASN LYS ARG SER SER GLU ASP PHE VAL SEQRES 61 A 1193 ILE LEU ARG GLU LYS ASN ILE GLY SER MET SER ALA ASN SEQRES 62 A 1193 VAL ALA LEU TYR SER LYS ASP ASP HIS LEU ASN VAL THR SEQRES 63 A 1193 ASP LYS TYR ASN ALA GLN ALA LEU PHE ASN LEU GLU MET SEQRES 64 A 1193 HIS VAL LEU SER HIS LYS CYS ASN ASP ALA LEU ASN ILE SEQRES 65 A 1193 ALA LEU GLU ALA VAL LYS GLU SER ASP PHE SER ASN LYS SEQRES 66 A 1193 LYS LYS VAL ILE ASP ILE LEU LYS ARG LYS ILE ASN GLY SEQRES 67 A 1193 MET LYS THR THR PHE SER GLU LYS GLY TYR ALA ILE LEU SEQRES 68 A 1193 MET LYS TYR VAL LYS ALA HIS LEU ASN SER LYS HIS TYR SEQRES 69 A 1193 ALA HIS ASN ILE ILE TYR GLY TYR GLU ASN TYR LEU LYS SEQRES 70 A 1193 LEU GLN GLU GLN LEU GLU LEU ALA GLU ASN ASP PHE LYS SEQRES 71 A 1193 THR LEU GLU ASN ILE LEU VAL ARG ILE ARG ASN LYS ILE SEQRES 72 A 1193 PHE ASN LYS LYS ASN LEU MET VAL SER VAL THR SER ASP SEQRES 73 A 1193 TYR GLY ALA LEU LYS HIS LEU PHE VAL ASN SER ASN GLU SEQRES 74 A 1193 SER LEU LYS ASN LEU VAL SER TYR PHE GLU GLU ASN ASP SEQRES 75 A 1193 LYS TYR ILE ASN ASP MET GLN ASN LYS VAL ASN ASP PRO SEQRES 76 A 1193 THR VAL MET GLY TRP ASN GLU GLU ILE LYS SER LYS LYS SEQRES 77 A 1193 LEU PHE ASP GLU GLU LYS VAL LYS LYS GLU PHE PHE VAL SEQRES 78 A 1193 LEU PRO THR PHE VAL ASN SER VAL SER MET SER GLY ILE SEQRES 79 A 1193 LEU PHE LYS PRO GLY GLU TYR LEU ASP PRO SER PHE THR SEQRES 80 A 1193 VAL ILE VAL ALA ALA LEU LYS ASN SER TYR LEU TRP ASP SEQRES 81 A 1193 THR VAL ARG GLY LEU ASN GLY ALA TYR GLY VAL PHE ALA SEQRES 82 A 1193 ASP ILE GLU TYR ASP GLY SER VAL VAL PHE LEU SER ALA SEQRES 83 A 1193 ARG ASP PRO ASN LEU GLU LYS THR LEU ALA THR PHE ARG SEQRES 84 A 1193 GLU SER ALA LYS GLY LEU ARG LYS MET ALA ASP THR MET SEQRES 85 A 1193 THR GLU ASN ASP LEU LEU ARG TYR ILE ILE ASN THR ILE SEQRES 86 A 1193 GLY THR ILE ASP LYS PRO ARG ARG GLY ILE GLU LEU SER SEQRES 87 A 1193 LYS LEU SER PHE LEU ARG LEU ILE SER ASN GLU SER GLU SEQRES 88 A 1193 GLN ASP ARG VAL GLU PHE ARG LYS ARG ILE MET ASN THR SEQRES 89 A 1193 LYS LYS GLU ASP PHE TYR LYS PHE ALA ASP LEU LEU GLU SEQRES 90 A 1193 SER LYS VAL ASN GLU PHE GLU LYS ASN ILE VAL ILE ILE SEQRES 91 A 1193 THR THR LYS GLU LYS ALA ASN GLU TYR ILE ALA ASN VAL SEQRES 92 A 1193 ASP GLY GLU PHE LYS LYS VAL LEU ILE GLU FORMUL 2 HOH *1571(H2 O) HELIX 1 1 PRO A 58 SER A 65 5 8 HELIX 2 2 GLY A 126 VAL A 135 1 10 HELIX 3 3 ASN A 146 GLY A 154 1 9 HELIX 4 4 ASN A 177 GLN A 194 1 18 HELIX 5 5 PRO A 195 GLU A 199 5 5 HELIX 6 6 ASN A 200 GLY A 208 1 9 HELIX 7 7 LYS A 217 LYS A 221 5 5 HELIX 8 8 GLY A 238 ALA A 247 1 10 HELIX 9 9 SER A 250 PHE A 264 1 15 HELIX 10 10 ASN A 267 ASN A 271 5 5 HELIX 11 11 ASP A 276 THR A 281 1 6 HELIX 12 12 THR A 284 TYR A 296 1 13 HELIX 13 13 PRO A 311 GLY A 323 1 13 HELIX 14 14 GLN A 324 LEU A 325 5 2 HELIX 15 15 ASP A 326 TYR A 330 5 5 HELIX 16 16 ASN A 409 HIS A 425 1 17 HELIX 17 17 SER A 429 GLY A 439 1 11 HELIX 18 18 ASN A 474 ASP A 476 5 3 HELIX 19 19 LYS A 477 GLY A 497 1 21 HELIX 20 20 ASN A 499 ASN A 518 1 20 HELIX 21 21 LYS A 523 TYR A 537 1 15 HELIX 22 22 GLU A 546 GLU A 561 1 16 HELIX 23 23 MET A 563 PHE A 573 1 11 HELIX 24 24 ASN A 589 PHE A 609 1 21 HELIX 25 25 ASN A 610 ALA A 630 1 21 HELIX 26 26 SER A 633 ASN A 638 1 6 HELIX 27 27 SER A 644 LEU A 648 5 5 HELIX 28 28 ASN A 669 THR A 679 1 11 HELIX 29 29 ASN A 680 VAL A 696 1 17 HELIX 30 30 THR A 752 ALA A 757 1 6 HELIX 31 31 TYR A 758 ILE A 766 1 9 HELIX 32 32 SER A 775 ILE A 787 1 13 HELIX 33 33 LYS A 825 GLU A 839 1 15 HELIX 34 34 ASN A 844 LYS A 866 1 23 HELIX 35 35 LYS A 866 VAL A 875 1 10 HELIX 36 36 ASN A 880 TYR A 890 1 11 HELIX 37 37 GLY A 891 ASP A 908 1 18 HELIX 38 38 ASP A 908 PHE A 924 1 17 HELIX 39 39 ASP A 936 ALA A 939 5 4 HELIX 40 40 LEU A 940 VAL A 945 1 6 HELIX 41 41 SER A 947 ASN A 961 1 15 HELIX 42 42 ASP A 962 ILE A 965 5 4 HELIX 43 43 GLY A 979 LYS A 987 1 9 HELIX 44 44 PRO A 1024 SER A 1036 1 13 HELIX 45 45 SER A 1036 ARG A 1043 1 8 HELIX 46 46 LEU A 1071 GLU A 1080 1 10 HELIX 47 47 GLU A 1080 MET A 1092 1 13 HELIX 48 48 THR A 1093 ASP A 1109 1 17 HELIX 49 49 GLY A 1114 SER A 1127 1 14 HELIX 50 50 SER A 1130 ASN A 1143 1 14 HELIX 51 51 LYS A 1145 LYS A 1159 1 15 HELIX 52 52 LYS A 1159 GLU A 1164 1 6 HELIX 53 53 THR A 1172 VAL A 1183 1 12 SHEET 1 A 7 TYR A 71 ASN A 79 0 SHEET 2 A 7 MET A 84 HIS A 91 -1 O MET A 84 N ASN A 79 SHEET 3 A 7 GLN A 97 THR A 103 -1 O SER A 100 N THR A 87 SHEET 4 A 7 LYS A 302 SER A 307 1 O VAL A 303 N ILE A 99 SHEET 5 A 7 GLN A 111 LYS A 118 -1 N TYR A 116 O LYS A 302 SHEET 6 A 7 ARG A 168 SER A 175 -1 O THR A 169 N VAL A 117 SHEET 7 A 7 HIS A 157 THR A 164 -1 N ASN A 161 O MET A 172 SHEET 1 B 3 THR A 210 LYS A 215 0 SHEET 2 B 3 TYR A 232 ASN A 237 -1 O LYS A 233 N GLU A 214 SHEET 3 B 3 GLN A 228 MET A 229 -1 N MET A 229 O TYR A 232 SHEET 1 C 5 PHE A 348 GLY A 355 0 SHEET 2 C 5 ARG A 579 ASP A 587 1 O VAL A 581 N PHE A 348 SHEET 3 C 5 ASN A 363 LEU A 370 -1 N LEU A 364 O LEU A 584 SHEET 4 C 5 ILE A 457 ILE A 465 -1 O ILE A 460 N VAL A 367 SHEET 5 C 5 ASN A 443 ASN A 450 -1 N ASN A 443 O LYS A 463 SHEET 1 D 6 ASN A 658 THR A 662 0 SHEET 2 D 6 VAL A 727 GLU A 733 -1 O VAL A 731 N ASN A 658 SHEET 3 D 6 LEU A 929 SER A 935 1 O VAL A 931 N LEU A 730 SHEET 4 D 6 ILE A 739 SER A 747 -1 N VAL A 745 O MET A 930 SHEET 5 D 6 GLN A 812 LEU A 822 -1 O MET A 819 N LEU A 742 SHEET 6 D 6 SER A 789 TYR A 797 -1 N SER A 789 O HIS A 820 SHEET 1 E 6 GLY A1050 ILE A1055 0 SHEET 2 E 6 SER A1060 ALA A1066 -1 O LEU A1064 N PHE A1052 SHEET 3 E 6 SER A1008 ILE A1014 -1 N MET A1011 O PHE A1063 SHEET 4 E 6 ASN A1166 THR A1171 -1 O ILE A1170 N SER A1008 SHEET 5 E 6 LYS A 996 VAL A1001 1 N LYS A 996 O ILE A1167 SHEET 6 E 6 LYS A1188 LEU A1191 1 O VAL A1190 N PHE A 999 CISPEP 1 GLY A 346 PRO A 347 0 -1.13 CRYST1 94.350 107.120 128.060 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010599 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009335 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007809 0.00000