HEADER DNA BINDING PROTEIN 23-MAY-11 3S5R TITLE CRYSTAL STRUCTURE OF A PUTATIVE TRANSCRIPTIONAL REGULATOR OF THE TETR TITLE 2 FAMILY (SYN_02108) FROM SYNTROPHUS ACIDITROPHICUS AT 2.60 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR TETR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTROPHUS ACIDITROPHICUS; SOURCE 3 ORGANISM_TAXID: 56780; SOURCE 4 STRAIN: SB; SOURCE 5 GENE: SYNAS_10510, SYN_02108; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS DNA/RNA-BINDING 3-HELICAL BUNDLE, TETRACYCLIN REPRESSOR-LIKE, KEYWDS 2 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 3S5R 1 REMARK SEQADV LINK REVDAT 3 25-OCT-17 3S5R 1 REMARK REVDAT 2 13-JUL-11 3S5R 1 TITLE REVDAT 1 15-JUN-11 3S5R 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE TRANSCRIPTIONAL REGULATOR OF JRNL TITL 2 THE TETR FAMILY (SYN_02108) FROM SYNTROPHUS ACIDITROPHICUS JRNL TITL 3 SB AT 2.60 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 16290 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 826 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.78 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2932 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2604 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2770 REMARK 3 BIN R VALUE (WORKING SET) : 0.2579 REMARK 3 BIN FREE R VALUE : 0.3097 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.53 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 162 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2925 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -14.55850 REMARK 3 B22 (A**2) : 2.72770 REMARK 3 B33 (A**2) : 11.83080 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3011 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4092 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1398 ; 6.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 59 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 437 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2993 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 447 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3568 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.04 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.05 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 18.1282 28.9037 90.8199 REMARK 3 T TENSOR REMARK 3 T11: 0.3047 T22: -0.3044 REMARK 3 T33: -0.2801 T12: 0.0153 REMARK 3 T13: -0.0598 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 0.4602 L22: 2.4101 REMARK 3 L33: 8.3252 L12: 0.1146 REMARK 3 L13: -1.4373 L23: 0.7401 REMARK 3 S TENSOR REMARK 3 S11: 0.0189 S12: -0.0900 S13: 0.1266 REMARK 3 S21: -0.0303 S22: 0.0183 S23: -0.1537 REMARK 3 S31: -0.4150 S32: 0.3029 S33: -0.0372 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 19.4146 10.4667 78.0009 REMARK 3 T TENSOR REMARK 3 T11: 0.3050 T22: -0.3042 REMARK 3 T33: -0.3042 T12: 0.0338 REMARK 3 T13: 0.0827 T23: 0.0514 REMARK 3 L TENSOR REMARK 3 L11: 0.3928 L22: 5.6623 REMARK 3 L33: 3.1669 L12: -0.9245 REMARK 3 L13: 0.5815 L23: -0.9134 REMARK 3 S TENSOR REMARK 3 S11: -0.0666 S12: 0.0132 S13: -0.2341 REMARK 3 S21: 0.1032 S22: 0.0634 S23: 0.2902 REMARK 3 S31: 0.0278 S32: 0.0723 S33: 0.0031 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 3. PEG-4000 FRAGMENTS(PEG) FROM THE CRYSTALLIZATION REMARK 3 CONDITION AND 1,2 ETHANEDIOL (EDO) FROM THE CRYOPROTECTANT HAVE REMARK 3 BEEN MODELED IN THE SOLVENT STRUCTURE. 4. NCS RESTRAINTS WERE REMARK 3 APPLIED USING BUSTER LSSR RESTRAINT REPRESENTATION (-AUTONCS). REMARK 3 5. THE REFINEMENT WAS RESTRAINED WITH THE MAD PHASES. REMARK 4 REMARK 4 3S5R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065795. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97936 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE DECEMBER 6, 2010 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16314 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 29.279 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.62700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15.00% GLYCEROL, 8.500% ISO-PROPANOL, REMARK 280 17.00% PEG-4000, 0.1M HEPES PH 7.5, NANODROP, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.01500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.01500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.21650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.36050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.21650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.36050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.01500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.21650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.36050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.01500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.21650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.36050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS AND ANALYTICAL SIZE-EXCLUSION REMARK 300 CHROMATOGRAPHY SUPPORT THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 GLN A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 MSE A 5 REMARK 465 THR A 6 REMARK 465 ASP A 7 REMARK 465 SER A 205 REMARK 465 ASN A 206 REMARK 465 SER A 207 REMARK 465 ASP A 208 REMARK 465 ASP A 209 REMARK 465 ILE A 210 REMARK 465 LYS A 211 REMARK 465 LYS A 212 REMARK 465 GLN A 213 REMARK 465 ARG A 214 REMARK 465 THR A 215 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 GLN B 2 REMARK 465 ALA B 3 REMARK 465 THR B 4 REMARK 465 MSE B 5 REMARK 465 THR B 6 REMARK 465 ASP B 7 REMARK 465 LYS B 8 REMARK 465 SER B 205 REMARK 465 ASN B 206 REMARK 465 SER B 207 REMARK 465 ASP B 208 REMARK 465 ASP B 209 REMARK 465 ILE B 210 REMARK 465 LYS B 211 REMARK 465 LYS B 212 REMARK 465 GLN B 213 REMARK 465 ARG B 214 REMARK 465 THR B 215 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 ASP A 81 CG OD1 OD2 REMARK 470 ARG A 88 CD NE CZ NH1 NH2 REMARK 470 GLU A 99 CG CD OE1 OE2 REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 ASN A 125 CG OD1 ND2 REMARK 470 ASP A 130 CG OD1 OD2 REMARK 470 LYS A 138 CG CD CE NZ REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 173 CG CD CE NZ REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 GLU A 187 CG CD OE1 OE2 REMARK 470 GLN B 25 CG CD OE1 NE2 REMARK 470 GLU B 34 CG CD OE1 OE2 REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 ASP B 70 CG OD1 OD2 REMARK 470 GLU B 79 CG CD OE1 OE2 REMARK 470 ASN B 96 CG OD1 ND2 REMARK 470 GLU B 99 CG CD OE1 OE2 REMARK 470 LEU B 102 CG CD1 CD2 REMARK 470 GLU B 121 CG CD OE1 OE2 REMARK 470 ASP B 130 CG OD1 OD2 REMARK 470 LYS B 138 CG CD CE NZ REMARK 470 GLU B 141 CG CD OE1 OE2 REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 GLU B 187 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 64 -63.36 -129.58 REMARK 500 THR A 77 -163.79 -119.57 REMARK 500 ILE A 112 -60.66 -105.84 REMARK 500 THR A 180 59.38 -90.97 REMARK 500 MSE A 181 -30.96 -155.59 REMARK 500 ARG B 64 -55.35 -129.64 REMARK 500 THR B 77 -162.79 -114.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 399109 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3S5R A 1 215 UNP Q2LS68 Q2LS68_SYNAS 1 215 DBREF 3S5R B 1 215 UNP Q2LS68 Q2LS68_SYNAS 1 215 SEQADV 3S5R GLY A 0 UNP Q2LS68 EXPRESSION TAG SEQADV 3S5R GLY B 0 UNP Q2LS68 EXPRESSION TAG SEQRES 1 A 216 GLY MSE GLN ALA THR MSE THR ASP LYS ASN THR ARG GLU SEQRES 2 A 216 LEU LEU LEU ASP ALA ALA THR THR LEU PHE ALA GLU GLN SEQRES 3 A 216 GLY ILE ALA ALA THR THR MSE ALA GLU ILE ALA ALA SER SEQRES 4 A 216 VAL GLY VAL ASN PRO ALA MSE ILE HIS TYR TYR PHE LYS SEQRES 5 A 216 THR ARG ASP SER LEU LEU ASP THR ILE ILE GLU GLU ARG SEQRES 6 A 216 ILE GLY ARG ILE ILE ASP MSE ILE TRP GLU PRO VAL THR SEQRES 7 A 216 GLY GLU GLU ASP ASP PRO LEU ILE MSE VAL ARG ASP LEU SEQRES 8 A 216 VAL ASN ARG ILE VAL ASN THR CYS GLU THR MSE LEU TRP SEQRES 9 A 216 LEU PRO SER LEU TRP ILE ARG GLU ILE VAL ASN GLU GLY SEQRES 10 A 216 GLY ALA LEU ARG GLU LYS MSE LEU ASN ASN ILE PRO ILE SEQRES 11 A 216 ASP LYS MSE ASN LYS PHE SER ALA LYS ILE ALA GLU GLY SEQRES 12 A 216 GLN LYS GLN GLY VAL ILE ASN SER GLY ILE ASP SER ARG SEQRES 13 A 216 LEU LEU ILE GLY SER ILE ILE GLY LEU THR MSE LEU PRO SEQRES 14 A 216 LEU ALA THR ALA LYS LEU ARG ASP GLN ILE PRO THR MSE SEQRES 15 A 216 LYS GLY LEU SER SER GLU ASP ILE VAL CYS HIS VAL THR SEQRES 16 A 216 ALA LEU LEU PHE THR GLY LEU THR ASN PRO SER ASN SER SEQRES 17 A 216 ASP ASP ILE LYS LYS GLN ARG THR SEQRES 1 B 216 GLY MSE GLN ALA THR MSE THR ASP LYS ASN THR ARG GLU SEQRES 2 B 216 LEU LEU LEU ASP ALA ALA THR THR LEU PHE ALA GLU GLN SEQRES 3 B 216 GLY ILE ALA ALA THR THR MSE ALA GLU ILE ALA ALA SER SEQRES 4 B 216 VAL GLY VAL ASN PRO ALA MSE ILE HIS TYR TYR PHE LYS SEQRES 5 B 216 THR ARG ASP SER LEU LEU ASP THR ILE ILE GLU GLU ARG SEQRES 6 B 216 ILE GLY ARG ILE ILE ASP MSE ILE TRP GLU PRO VAL THR SEQRES 7 B 216 GLY GLU GLU ASP ASP PRO LEU ILE MSE VAL ARG ASP LEU SEQRES 8 B 216 VAL ASN ARG ILE VAL ASN THR CYS GLU THR MSE LEU TRP SEQRES 9 B 216 LEU PRO SER LEU TRP ILE ARG GLU ILE VAL ASN GLU GLY SEQRES 10 B 216 GLY ALA LEU ARG GLU LYS MSE LEU ASN ASN ILE PRO ILE SEQRES 11 B 216 ASP LYS MSE ASN LYS PHE SER ALA LYS ILE ALA GLU GLY SEQRES 12 B 216 GLN LYS GLN GLY VAL ILE ASN SER GLY ILE ASP SER ARG SEQRES 13 B 216 LEU LEU ILE GLY SER ILE ILE GLY LEU THR MSE LEU PRO SEQRES 14 B 216 LEU ALA THR ALA LYS LEU ARG ASP GLN ILE PRO THR MSE SEQRES 15 B 216 LYS GLY LEU SER SER GLU ASP ILE VAL CYS HIS VAL THR SEQRES 16 B 216 ALA LEU LEU PHE THR GLY LEU THR ASN PRO SER ASN SER SEQRES 17 B 216 ASP ASP ILE LYS LYS GLN ARG THR MODRES 3S5R MSE A 32 MET SELENOMETHIONINE MODRES 3S5R MSE A 45 MET SELENOMETHIONINE MODRES 3S5R MSE A 71 MET SELENOMETHIONINE MODRES 3S5R MSE A 86 MET SELENOMETHIONINE MODRES 3S5R MSE A 101 MET SELENOMETHIONINE MODRES 3S5R MSE A 123 MET SELENOMETHIONINE MODRES 3S5R MSE A 132 MET SELENOMETHIONINE MODRES 3S5R MSE A 166 MET SELENOMETHIONINE MODRES 3S5R MSE A 181 MET SELENOMETHIONINE MODRES 3S5R MSE B 32 MET SELENOMETHIONINE MODRES 3S5R MSE B 45 MET SELENOMETHIONINE MODRES 3S5R MSE B 71 MET SELENOMETHIONINE MODRES 3S5R MSE B 86 MET SELENOMETHIONINE MODRES 3S5R MSE B 101 MET SELENOMETHIONINE MODRES 3S5R MSE B 123 MET SELENOMETHIONINE MODRES 3S5R MSE B 132 MET SELENOMETHIONINE MODRES 3S5R MSE B 166 MET SELENOMETHIONINE MODRES 3S5R MSE B 181 MET SELENOMETHIONINE HET MSE A 32 8 HET MSE A 45 8 HET MSE A 71 8 HET MSE A 86 8 HET MSE A 101 8 HET MSE A 123 8 HET MSE A 132 8 HET MSE A 166 8 HET MSE A 181 8 HET MSE B 32 8 HET MSE B 45 8 HET MSE B 71 8 HET MSE B 86 8 HET MSE B 101 8 HET MSE B 123 8 HET MSE B 132 8 HET MSE B 166 8 HET MSE B 181 8 HET PEG A 300 7 HET PEG A 302 7 HET EDO A 303 4 HET EDO A 304 4 HET PEG B 301 7 HETNAM MSE SELENOMETHIONINE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 18(C5 H11 N O2 SE) FORMUL 3 PEG 3(C4 H10 O3) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 8 HOH *7(H2 O) HELIX 1 1 ASN A 9 GLY A 26 1 18 HELIX 2 2 THR A 31 SER A 38 1 8 HELIX 3 3 ASN A 42 PHE A 50 1 9 HELIX 4 4 THR A 52 ARG A 64 1 13 HELIX 5 5 ARG A 64 GLU A 74 1 11 HELIX 6 6 ASP A 82 MSE A 101 1 20 HELIX 7 7 LEU A 102 ILE A 112 1 11 HELIX 8 8 LEU A 119 ASN A 125 1 7 HELIX 9 9 PRO A 128 GLN A 145 1 18 HELIX 10 10 ARG A 155 THR A 171 1 17 HELIX 11 11 THR A 171 ASP A 176 1 6 HELIX 12 12 ILE A 178 LYS A 182 5 5 HELIX 13 13 SER A 185 THR A 199 1 15 HELIX 14 14 ASN B 9 GLY B 26 1 18 HELIX 15 15 THR B 31 SER B 38 1 8 HELIX 16 16 ASN B 42 PHE B 50 1 9 HELIX 17 17 THR B 52 ARG B 64 1 13 HELIX 18 18 ARG B 64 GLU B 74 1 11 HELIX 19 19 ASP B 82 MSE B 101 1 20 HELIX 20 20 LEU B 102 ILE B 112 1 11 HELIX 21 21 LEU B 119 ASN B 125 1 7 HELIX 22 22 PRO B 128 GLN B 145 1 18 HELIX 23 23 ARG B 155 THR B 171 1 17 HELIX 24 24 THR B 171 ASP B 176 1 6 HELIX 25 25 SER B 185 THR B 199 1 15 LINK C THR A 31 N MSE A 32 1555 1555 1.34 LINK C MSE A 32 N ALA A 33 1555 1555 1.35 LINK C ALA A 44 N MSE A 45 1555 1555 1.34 LINK C MSE A 45 N ILE A 46 1555 1555 1.36 LINK C ASP A 70 N MSE A 71 1555 1555 1.36 LINK C MSE A 71 N ILE A 72 1555 1555 1.35 LINK C ILE A 85 N MSE A 86 1555 1555 1.36 LINK C MSE A 86 N VAL A 87 1555 1555 1.36 LINK C THR A 100 N MSE A 101 1555 1555 1.35 LINK C MSE A 101 N LEU A 102 1555 1555 1.35 LINK C LYS A 122 N MSE A 123 1555 1555 1.34 LINK C MSE A 123 N LEU A 124 1555 1555 1.35 LINK C LYS A 131 N MSE A 132 1555 1555 1.35 LINK C MSE A 132 N ASN A 133 1555 1555 1.35 LINK C THR A 165 N MSE A 166 1555 1555 1.34 LINK C MSE A 166 N LEU A 167 1555 1555 1.36 LINK C THR A 180 N MSE A 181 1555 1555 1.35 LINK C MSE A 181 N LYS A 182 1555 1555 1.35 LINK C THR B 31 N MSE B 32 1555 1555 1.35 LINK C MSE B 32 N ALA B 33 1555 1555 1.35 LINK C ALA B 44 N MSE B 45 1555 1555 1.34 LINK C MSE B 45 N ILE B 46 1555 1555 1.36 LINK C ASP B 70 N MSE B 71 1555 1555 1.35 LINK C MSE B 71 N ILE B 72 1555 1555 1.35 LINK C ILE B 85 N MSE B 86 1555 1555 1.34 LINK C MSE B 86 N VAL B 87 1555 1555 1.36 LINK C THR B 100 N MSE B 101 1555 1555 1.35 LINK C MSE B 101 N LEU B 102 1555 1555 1.34 LINK C LYS B 122 N MSE B 123 1555 1555 1.34 LINK C MSE B 123 N LEU B 124 1555 1555 1.35 LINK C LYS B 131 N MSE B 132 1555 1555 1.35 LINK C MSE B 132 N ASN B 133 1555 1555 1.36 LINK C THR B 165 N MSE B 166 1555 1555 1.35 LINK C MSE B 166 N LEU B 167 1555 1555 1.36 LINK C THR B 180 N MSE B 181 1555 1555 1.34 LINK C MSE B 181 N LYS B 182 1555 1555 1.35 SITE 1 AC1 3 THR A 31 MSE A 32 ARG A 53 SITE 1 AC2 5 ILE A 69 TRP A 73 MSE A 132 ILE A 162 SITE 2 AC2 5 MSE A 166 SITE 1 AC3 6 LYS A 8 THR A 10 TYR A 49 ILE B 85 SITE 2 AC3 6 ARG B 88 PHE B 198 SITE 1 AC4 2 ILE A 27 ARG A 53 SITE 1 AC5 4 ILE B 69 TRP B 108 MSE B 132 MSE B 166 CRYST1 74.433 110.721 126.030 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013435 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009032 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007935 0.00000