data_3S5T # _entry.id 3S5T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3S5T pdb_00003s5t 10.2210/pdb3s5t/pdb RCSB RCSB065797 ? ? WWPDB D_1000065797 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 390146 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3S5T _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-05-23 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a Member of DUF3298 family (BF2082) from Bacteroides fragilis NCTC 9343 at 2.30 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3S5T _cell.length_a 98.330 _cell.length_b 98.330 _cell.length_c 121.130 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3S5T _symmetry.Int_Tables_number 179 _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DUF3298 family protein' 30739.795 1 ? ? ? ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 2 ? ? ? ? 3 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 3 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 water nat water 18.015 55 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSCGDK(MSE)NKNTGALEFDSIQVNETAHLFGDTAKPACNLTINFAYPVKSTDNKLKDSLNSYFIAACFGEGYIGEKPA QVVKEYTEHYVKEYRTDLEP(MSE)YAEDEKNKESEGSIGAWYSYYKGIESHVQLYYKNLLVYRINYNEYTGGAHGIY (MSE)TTFLN(MSE)DLINLRPLKLDDIFTGDYKEALTDLLWNQL(MSE)ADKKVTTHEALED(MSE)GYGSTGDIAPTE NFYLDKDGITFYYNVYDITPYA(MSE)GPVEIKIPYE(MSE)(MSE)EH(MSE)LGSNPIIGE(MSE)KSK ; _entity_poly.pdbx_seq_one_letter_code_can ;GSCGDKMNKNTGALEFDSIQVNETAHLFGDTAKPACNLTINFAYPVKSTDNKLKDSLNSYFIAACFGEGYIGEKPAQVVK EYTEHYVKEYRTDLEPMYAEDEKNKESEGSIGAWYSYYKGIESHVQLYYKNLLVYRINYNEYTGGAHGIYMTTFLNMDLI NLRPLKLDDIFTGDYKEALTDLLWNQLMADKKVTTHEALEDMGYGSTGDIAPTENFYLDKDGITFYYNVYDITPYAMGPV EIKIPYEMMEHMLGSNPIIGEMKSK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 390146 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 CYS n 1 4 GLY n 1 5 ASP n 1 6 LYS n 1 7 MSE n 1 8 ASN n 1 9 LYS n 1 10 ASN n 1 11 THR n 1 12 GLY n 1 13 ALA n 1 14 LEU n 1 15 GLU n 1 16 PHE n 1 17 ASP n 1 18 SER n 1 19 ILE n 1 20 GLN n 1 21 VAL n 1 22 ASN n 1 23 GLU n 1 24 THR n 1 25 ALA n 1 26 HIS n 1 27 LEU n 1 28 PHE n 1 29 GLY n 1 30 ASP n 1 31 THR n 1 32 ALA n 1 33 LYS n 1 34 PRO n 1 35 ALA n 1 36 CYS n 1 37 ASN n 1 38 LEU n 1 39 THR n 1 40 ILE n 1 41 ASN n 1 42 PHE n 1 43 ALA n 1 44 TYR n 1 45 PRO n 1 46 VAL n 1 47 LYS n 1 48 SER n 1 49 THR n 1 50 ASP n 1 51 ASN n 1 52 LYS n 1 53 LEU n 1 54 LYS n 1 55 ASP n 1 56 SER n 1 57 LEU n 1 58 ASN n 1 59 SER n 1 60 TYR n 1 61 PHE n 1 62 ILE n 1 63 ALA n 1 64 ALA n 1 65 CYS n 1 66 PHE n 1 67 GLY n 1 68 GLU n 1 69 GLY n 1 70 TYR n 1 71 ILE n 1 72 GLY n 1 73 GLU n 1 74 LYS n 1 75 PRO n 1 76 ALA n 1 77 GLN n 1 78 VAL n 1 79 VAL n 1 80 LYS n 1 81 GLU n 1 82 TYR n 1 83 THR n 1 84 GLU n 1 85 HIS n 1 86 TYR n 1 87 VAL n 1 88 LYS n 1 89 GLU n 1 90 TYR n 1 91 ARG n 1 92 THR n 1 93 ASP n 1 94 LEU n 1 95 GLU n 1 96 PRO n 1 97 MSE n 1 98 TYR n 1 99 ALA n 1 100 GLU n 1 101 ASP n 1 102 GLU n 1 103 LYS n 1 104 ASN n 1 105 LYS n 1 106 GLU n 1 107 SER n 1 108 GLU n 1 109 GLY n 1 110 SER n 1 111 ILE n 1 112 GLY n 1 113 ALA n 1 114 TRP n 1 115 TYR n 1 116 SER n 1 117 TYR n 1 118 TYR n 1 119 LYS n 1 120 GLY n 1 121 ILE n 1 122 GLU n 1 123 SER n 1 124 HIS n 1 125 VAL n 1 126 GLN n 1 127 LEU n 1 128 TYR n 1 129 TYR n 1 130 LYS n 1 131 ASN n 1 132 LEU n 1 133 LEU n 1 134 VAL n 1 135 TYR n 1 136 ARG n 1 137 ILE n 1 138 ASN n 1 139 TYR n 1 140 ASN n 1 141 GLU n 1 142 TYR n 1 143 THR n 1 144 GLY n 1 145 GLY n 1 146 ALA n 1 147 HIS n 1 148 GLY n 1 149 ILE n 1 150 TYR n 1 151 MSE n 1 152 THR n 1 153 THR n 1 154 PHE n 1 155 LEU n 1 156 ASN n 1 157 MSE n 1 158 ASP n 1 159 LEU n 1 160 ILE n 1 161 ASN n 1 162 LEU n 1 163 ARG n 1 164 PRO n 1 165 LEU n 1 166 LYS n 1 167 LEU n 1 168 ASP n 1 169 ASP n 1 170 ILE n 1 171 PHE n 1 172 THR n 1 173 GLY n 1 174 ASP n 1 175 TYR n 1 176 LYS n 1 177 GLU n 1 178 ALA n 1 179 LEU n 1 180 THR n 1 181 ASP n 1 182 LEU n 1 183 LEU n 1 184 TRP n 1 185 ASN n 1 186 GLN n 1 187 LEU n 1 188 MSE n 1 189 ALA n 1 190 ASP n 1 191 LYS n 1 192 LYS n 1 193 VAL n 1 194 THR n 1 195 THR n 1 196 HIS n 1 197 GLU n 1 198 ALA n 1 199 LEU n 1 200 GLU n 1 201 ASP n 1 202 MSE n 1 203 GLY n 1 204 TYR n 1 205 GLY n 1 206 SER n 1 207 THR n 1 208 GLY n 1 209 ASP n 1 210 ILE n 1 211 ALA n 1 212 PRO n 1 213 THR n 1 214 GLU n 1 215 ASN n 1 216 PHE n 1 217 TYR n 1 218 LEU n 1 219 ASP n 1 220 LYS n 1 221 ASP n 1 222 GLY n 1 223 ILE n 1 224 THR n 1 225 PHE n 1 226 TYR n 1 227 TYR n 1 228 ASN n 1 229 VAL n 1 230 TYR n 1 231 ASP n 1 232 ILE n 1 233 THR n 1 234 PRO n 1 235 TYR n 1 236 ALA n 1 237 MSE n 1 238 GLY n 1 239 PRO n 1 240 VAL n 1 241 GLU n 1 242 ILE n 1 243 LYS n 1 244 ILE n 1 245 PRO n 1 246 TYR n 1 247 GLU n 1 248 MSE n 1 249 MSE n 1 250 GLU n 1 251 HIS n 1 252 MSE n 1 253 LEU n 1 254 GLY n 1 255 SER n 1 256 ASN n 1 257 PRO n 1 258 ILE n 1 259 ILE n 1 260 GLY n 1 261 GLU n 1 262 MSE n 1 263 LYS n 1 264 SER n 1 265 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BF2082 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'NCTC 9343' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides fragilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272559 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5LDM9_BACFN _struct_ref.pdbx_db_accession Q5LDM9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SCGDKMNKNTGALEFDSIQVNETAHLFGDTAKPACNLTINFAYPVKSTDNKLKDSLNSYFIAACFGEGYIGEKPAQVVKE YTEHYVKEYRTDLEPMYAEDEKNKESEGSIGAWYSYYKGIESHVQLYYKNLLVYRINYNEYTGGAHGIYMTTFLNMDLIN LRPLKLDDIFTGDYKEALTDLLWNQLMADKKVTTHEALEDMGYGSTGDIAPTENFYLDKDGITFYYNVYDITPYAMGPVE IKIPYEMMEHMLGSNPIIGEMKSK ; _struct_ref.pdbx_align_begin 21 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3S5T _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 265 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5LDM9 _struct_ref_seq.db_align_beg 21 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 284 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 21 _struct_ref_seq.pdbx_auth_seq_align_end 284 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3S5T _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q5LDM9 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3S5T # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.75 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 55.27 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;10.0% 2-methyl-2,4-pentanediol, 0.2M lithium sulfate, 0.1M phosphate-citrate pH 4.2, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'double crystal monochromator' _diffrn_detector.pdbx_collection_date 2011-04-20 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97915 1.0 3 0.97892 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91837,0.97915,0.97892 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3S5T _reflns.d_resolution_high 2.30 _reflns.d_resolution_low 29.298 _reflns.number_all 15972 _reflns.number_obs 15972 _reflns.pdbx_netI_over_sigmaI 16.100 _reflns.pdbx_Rsym_value 0.065 _reflns.pdbx_redundancy 7.100 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.300 2.360 ? 8333 ? 0.731 1.1 0.731 ? 7.300 ? 1138 100.000 1 1 2.360 2.420 ? 8221 ? 0.611 1.3 0.611 ? 7.300 ? 1127 100.000 2 1 2.420 2.490 ? 7956 ? 0.510 1.5 0.510 ? 7.300 ? 1092 100.000 3 1 2.490 2.570 ? 7766 ? 0.376 2.0 0.376 ? 7.300 ? 1065 100.000 4 1 2.570 2.660 ? 7525 ? 0.330 2.3 0.330 ? 7.200 ? 1041 100.000 5 1 2.660 2.750 ? 7340 ? 0.254 3.0 0.254 ? 7.300 ? 1011 100.000 6 1 2.750 2.850 ? 6862 ? 0.184 4.0 0.184 ? 7.300 ? 945 100.000 7 1 2.850 2.970 ? 6810 ? 0.128 5.8 0.128 ? 7.200 ? 941 100.000 8 1 2.970 3.100 ? 6434 ? 0.112 6.6 0.112 ? 7.200 ? 893 100.000 9 1 3.100 3.250 ? 6316 ? 0.086 7.7 0.086 ? 7.200 ? 873 100.000 10 1 3.250 3.430 ? 5856 ? 0.075 8.4 0.075 ? 7.100 ? 821 100.000 11 1 3.430 3.640 ? 5632 ? 0.070 7.7 0.070 ? 7.100 ? 788 100.000 12 1 3.640 3.890 ? 5266 ? 0.059 9.8 0.059 ? 7.100 ? 741 100.000 13 1 3.890 4.200 ? 4862 ? 0.049 12.1 0.049 ? 7.100 ? 688 100.000 14 1 4.200 4.600 ? 4516 ? 0.043 12.8 0.043 ? 7.000 ? 646 100.000 15 1 4.600 5.140 ? 4099 ? 0.039 13.6 0.039 ? 6.900 ? 591 100.000 16 1 5.140 5.940 ? 3549 ? 0.047 12.5 0.047 ? 6.800 ? 525 100.000 17 1 5.940 7.270 ? 2959 ? 0.051 11.9 0.051 ? 6.400 ? 459 100.000 18 1 7.270 10.290 ? 2297 ? 0.040 14.3 0.040 ? 6.200 ? 373 100.000 19 1 10.290 29.298 ? 1135 ? 0.042 13.3 0.042 ? 5.300 ? 214 93.600 20 1 # _refine.entry_id 3S5T _refine.ls_d_res_high 2.3000 _refine.ls_d_res_low 29.298 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs ? _refine.ls_number_reflns_obs 15929 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. MPD,CL, PO4 MODELED ARE PRESENT IN PROTEIN/CRYSTALLIZATION/ CRYO CONDITIONS. 4. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1874 _refine.ls_R_factor_R_work 0.1863 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2084 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.9800 _refine.ls_number_reflns_R_free 794 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 69.0520 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.8810 _refine.aniso_B[2][2] -0.8810 _refine.aniso_B[3][3] 1.7620 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9571 _refine.correlation_coeff_Fo_to_Fc_free 0.9484 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 184.470 _refine.B_iso_min 34.380 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.370 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2027 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 55 _refine_hist.number_atoms_total 2117 _refine_hist.d_res_high 2.3000 _refine_hist.d_res_low 29.298 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 966 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 60 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 306 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 2144 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd 1 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 278 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 2476 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 2144 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 2920 1.060 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.340 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 2.820 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.3000 _refine_ls_shell.d_res_low 2.4600 _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.number_reflns_R_work 2690 _refine_ls_shell.R_factor_all 0.2067 _refine_ls_shell.R_factor_R_work 0.2060 _refine_ls_shell.R_factor_R_free 0.2201 _refine_ls_shell.percent_reflns_R_free 4.6800 _refine_ls_shell.number_reflns_R_free 132 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2822 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3S5T _struct.title 'Crystal structure of a member of duf3298 family (BF2082) from bacteroides fragilis nctc 9343 at 2.30 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;PEPTIDOGLYCAN DEACETYLASE N-TERMINAL NONCATALYTIC REGION, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'Structural Genomics, unknown function' _struct_keywords.entry_id 3S5T # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 5 ? # _struct_biol.id 1 _struct_biol.details 'SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 28 ? ASP A 30 ? PHE A 47 ASP A 49 5 ? 3 HELX_P HELX_P2 2 ASP A 50 ? PHE A 66 ? ASP A 69 PHE A 85 1 ? 17 HELX_P HELX_P3 3 GLY A 67 ? ILE A 71 ? GLY A 86 ILE A 90 5 ? 5 HELX_P HELX_P4 4 LYS A 74 ? LYS A 105 ? LYS A 93 LYS A 124 1 ? 32 HELX_P HELX_P5 5 LYS A 166 ? PHE A 171 ? LYS A 185 PHE A 190 1 ? 6 HELX_P HELX_P6 6 TYR A 175 ? LYS A 191 ? TYR A 194 LYS A 210 1 ? 17 HELX_P HELX_P7 7 THR A 195 ? MSE A 202 ? THR A 214 MSE A 221 1 ? 8 HELX_P HELX_P8 8 PRO A 234 ? GLY A 238 ? PRO A 253 GLY A 257 5 ? 5 HELX_P HELX_P9 9 GLU A 247 ? MSE A 249 ? GLU A 266 MSE A 268 5 ? 3 HELX_P HELX_P10 10 ASN A 256 ? LYS A 265 ? ASN A 275 LYS A 284 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A PRO 96 C ? ? ? 1_555 A MSE 97 N ? ? A PRO 115 A MSE 116 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale2 covale both ? A MSE 97 C ? ? ? 1_555 A TYR 98 N ? ? A MSE 116 A TYR 117 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale3 covale both ? A TYR 150 C ? ? ? 1_555 A MSE 151 N ? ? A TYR 169 A MSE 170 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale4 covale both ? A MSE 151 C ? ? ? 1_555 A THR 152 N ? ? A MSE 170 A THR 171 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale5 covale both ? A ASN 156 C ? ? ? 1_555 A MSE 157 N ? ? A ASN 175 A MSE 176 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale6 covale both ? A MSE 157 C ? ? ? 1_555 A ASP 158 N ? ? A MSE 176 A ASP 177 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale7 covale both ? A LEU 187 C ? ? ? 1_555 A MSE 188 N ? ? A LEU 206 A MSE 207 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale8 covale both ? A MSE 188 C ? ? ? 1_555 A ALA 189 N ? ? A MSE 207 A ALA 208 1_555 ? ? ? ? ? ? ? 1.353 ? ? covale9 covale both ? A ASP 201 C ? ? ? 1_555 A MSE 202 N ? ? A ASP 220 A MSE 221 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale10 covale both ? A MSE 202 C ? ? ? 1_555 A GLY 203 N ? ? A MSE 221 A GLY 222 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale11 covale both ? A ALA 236 C ? ? ? 1_555 A MSE 237 N ? ? A ALA 255 A MSE 256 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale12 covale both ? A MSE 237 C ? ? ? 1_555 A GLY 238 N ? ? A MSE 256 A GLY 257 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale13 covale both ? A GLU 247 C ? ? ? 1_555 A MSE 248 N ? ? A GLU 266 A MSE 267 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale14 covale both ? A MSE 248 C ? ? ? 1_555 A MSE 249 N ? ? A MSE 267 A MSE 268 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale15 covale both ? A MSE 249 C ? ? ? 1_555 A GLU 250 N ? ? A MSE 268 A GLU 269 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale16 covale both ? A HIS 251 C ? ? ? 1_555 A MSE 252 N ? ? A HIS 270 A MSE 271 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale17 covale both ? A MSE 252 C ? ? ? 1_555 A LEU 253 N ? ? A MSE 271 A LEU 272 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale18 covale both ? A GLU 261 C ? ? ? 1_555 A MSE 262 N ? ? A GLU 280 A MSE 281 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale19 covale both ? A MSE 262 C ? ? ? 1_555 A LYS 263 N ? ? A MSE 281 A LYS 282 1_555 ? ? ? ? ? ? ? 1.354 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 15 ? HIS A 26 ? GLU A 34 HIS A 45 A 2 ALA A 35 ? LYS A 47 ? ALA A 54 LYS A 66 A 3 TYR A 117 ? TYR A 129 ? TYR A 136 TYR A 148 A 4 LEU A 132 ? TYR A 142 ? LEU A 151 TYR A 161 A 5 ILE A 149 ? ASP A 158 ? ILE A 168 ASP A 177 A 6 ARG A 163 ? PRO A 164 ? ARG A 182 PRO A 183 B 1 PHE A 216 ? LEU A 218 ? PHE A 235 LEU A 237 B 2 GLY A 222 ? TYR A 227 ? GLY A 241 TYR A 246 B 3 VAL A 240 ? PRO A 245 ? VAL A 259 PRO A 264 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 21 ? N VAL A 40 O ILE A 40 ? O ILE A 59 A 2 3 N ASN A 41 ? N ASN A 60 O SER A 123 ? O SER A 142 A 3 4 N GLU A 122 ? N GLU A 141 O ASN A 138 ? O ASN A 157 A 4 5 N TYR A 139 ? N TYR A 158 O MSE A 151 ? O MSE A 170 A 5 6 N ASP A 158 ? N ASP A 177 O ARG A 163 ? O ARG A 182 B 1 2 N TYR A 217 ? N TYR A 236 O THR A 224 ? O THR A 243 B 2 3 N TYR A 227 ? N TYR A 246 O VAL A 240 ? O VAL A 259 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PO4 285 ? 3 'BINDING SITE FOR RESIDUE PO4 A 285' AC2 Software A PO4 286 ? 1 'BINDING SITE FOR RESIDUE PO4 A 286' AC3 Software A MPD 287 ? 4 'BINDING SITE FOR RESIDUE MPD A 287' AC4 Software A MPD 288 ? 6 'BINDING SITE FOR RESIDUE MPD A 288' AC5 Software A MPD 289 ? 6 'BINDING SITE FOR RESIDUE MPD A 289' AC6 Software A CL 290 ? 2 'BINDING SITE FOR RESIDUE CL A 290' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 SER A 59 ? SER A 78 . ? 1_555 ? 2 AC1 3 TYR A 60 ? TYR A 79 . ? 1_555 ? 3 AC1 3 GLU A 68 ? GLU A 87 . ? 1_555 ? 4 AC2 1 LYS A 54 ? LYS A 73 . ? 1_555 ? 5 AC3 4 GLU A 89 ? GLU A 108 . ? 1_555 ? 6 AC3 4 TYR A 117 ? TYR A 136 . ? 1_555 ? 7 AC3 4 MPD E . ? MPD A 288 . ? 1_555 ? 8 AC3 4 HOH H . ? HOH A 339 . ? 1_555 ? 9 AC4 6 ASP A 93 ? ASP A 112 . ? 1_555 ? 10 AC4 6 LEU A 94 ? LEU A 113 . ? 1_555 ? 11 AC4 6 TYR A 117 ? TYR A 136 . ? 1_555 ? 12 AC4 6 HIS A 147 ? HIS A 166 . ? 10_665 ? 13 AC4 6 TYR A 230 ? TYR A 249 . ? 10_665 ? 14 AC4 6 MPD D . ? MPD A 287 . ? 1_555 ? 15 AC5 6 PHE A 28 ? PHE A 47 . ? 1_555 ? 16 AC5 6 GLY A 29 ? GLY A 48 . ? 1_555 ? 17 AC5 6 ARG A 91 ? ARG A 110 . ? 1_555 ? 18 AC5 6 GLU A 95 ? GLU A 114 . ? 1_555 ? 19 AC5 6 GLU A 100 ? GLU A 119 . ? 6_664 ? 20 AC5 6 ASN A 104 ? ASN A 123 . ? 6_664 ? 21 AC6 2 HIS A 26 ? HIS A 45 . ? 1_555 ? 22 AC6 2 ARG A 91 ? ARG A 110 . ? 1_555 ? # _atom_sites.entry_id 3S5T _atom_sites.fract_transf_matrix[1][1] 0.010170 _atom_sites.fract_transf_matrix[1][2] 0.005872 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011743 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008256 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 SER 2 21 ? ? ? A . n A 1 3 CYS 3 22 ? ? ? A . n A 1 4 GLY 4 23 ? ? ? A . n A 1 5 ASP 5 24 ? ? ? A . n A 1 6 LYS 6 25 ? ? ? A . n A 1 7 MSE 7 26 ? ? ? A . n A 1 8 ASN 8 27 ? ? ? A . n A 1 9 LYS 9 28 28 LYS LYS A . n A 1 10 ASN 10 29 29 ASN ASN A . n A 1 11 THR 11 30 30 THR THR A . n A 1 12 GLY 12 31 31 GLY GLY A . n A 1 13 ALA 13 32 32 ALA ALA A . n A 1 14 LEU 14 33 33 LEU LEU A . n A 1 15 GLU 15 34 34 GLU GLU A . n A 1 16 PHE 16 35 35 PHE PHE A . n A 1 17 ASP 17 36 36 ASP ASP A . n A 1 18 SER 18 37 37 SER SER A . n A 1 19 ILE 19 38 38 ILE ILE A . n A 1 20 GLN 20 39 39 GLN GLN A . n A 1 21 VAL 21 40 40 VAL VAL A . n A 1 22 ASN 22 41 41 ASN ASN A . n A 1 23 GLU 23 42 42 GLU GLU A . n A 1 24 THR 24 43 43 THR THR A . n A 1 25 ALA 25 44 44 ALA ALA A . n A 1 26 HIS 26 45 45 HIS HIS A . n A 1 27 LEU 27 46 46 LEU LEU A . n A 1 28 PHE 28 47 47 PHE PHE A . n A 1 29 GLY 29 48 48 GLY GLY A . n A 1 30 ASP 30 49 49 ASP ASP A . n A 1 31 THR 31 50 50 THR THR A . n A 1 32 ALA 32 51 51 ALA ALA A . n A 1 33 LYS 33 52 52 LYS LYS A . n A 1 34 PRO 34 53 53 PRO PRO A . n A 1 35 ALA 35 54 54 ALA ALA A . n A 1 36 CYS 36 55 55 CYS CYS A . n A 1 37 ASN 37 56 56 ASN ASN A . n A 1 38 LEU 38 57 57 LEU LEU A . n A 1 39 THR 39 58 58 THR THR A . n A 1 40 ILE 40 59 59 ILE ILE A . n A 1 41 ASN 41 60 60 ASN ASN A . n A 1 42 PHE 42 61 61 PHE PHE A . n A 1 43 ALA 43 62 62 ALA ALA A . n A 1 44 TYR 44 63 63 TYR TYR A . n A 1 45 PRO 45 64 64 PRO PRO A . n A 1 46 VAL 46 65 65 VAL VAL A . n A 1 47 LYS 47 66 66 LYS LYS A . n A 1 48 SER 48 67 67 SER SER A . n A 1 49 THR 49 68 68 THR THR A . n A 1 50 ASP 50 69 69 ASP ASP A . n A 1 51 ASN 51 70 70 ASN ASN A . n A 1 52 LYS 52 71 71 LYS LYS A . n A 1 53 LEU 53 72 72 LEU LEU A . n A 1 54 LYS 54 73 73 LYS LYS A . n A 1 55 ASP 55 74 74 ASP ASP A . n A 1 56 SER 56 75 75 SER SER A . n A 1 57 LEU 57 76 76 LEU LEU A . n A 1 58 ASN 58 77 77 ASN ASN A . n A 1 59 SER 59 78 78 SER SER A . n A 1 60 TYR 60 79 79 TYR TYR A . n A 1 61 PHE 61 80 80 PHE PHE A . n A 1 62 ILE 62 81 81 ILE ILE A . n A 1 63 ALA 63 82 82 ALA ALA A . n A 1 64 ALA 64 83 83 ALA ALA A . n A 1 65 CYS 65 84 84 CYS CYS A . n A 1 66 PHE 66 85 85 PHE PHE A . n A 1 67 GLY 67 86 86 GLY GLY A . n A 1 68 GLU 68 87 87 GLU GLU A . n A 1 69 GLY 69 88 88 GLY GLY A . n A 1 70 TYR 70 89 89 TYR TYR A . n A 1 71 ILE 71 90 90 ILE ILE A . n A 1 72 GLY 72 91 91 GLY GLY A . n A 1 73 GLU 73 92 92 GLU GLU A . n A 1 74 LYS 74 93 93 LYS LYS A . n A 1 75 PRO 75 94 94 PRO PRO A . n A 1 76 ALA 76 95 95 ALA ALA A . n A 1 77 GLN 77 96 96 GLN GLN A . n A 1 78 VAL 78 97 97 VAL VAL A . n A 1 79 VAL 79 98 98 VAL VAL A . n A 1 80 LYS 80 99 99 LYS LYS A . n A 1 81 GLU 81 100 100 GLU GLU A . n A 1 82 TYR 82 101 101 TYR TYR A . n A 1 83 THR 83 102 102 THR THR A . n A 1 84 GLU 84 103 103 GLU GLU A . n A 1 85 HIS 85 104 104 HIS HIS A . n A 1 86 TYR 86 105 105 TYR TYR A . n A 1 87 VAL 87 106 106 VAL VAL A . n A 1 88 LYS 88 107 107 LYS LYS A . n A 1 89 GLU 89 108 108 GLU GLU A . n A 1 90 TYR 90 109 109 TYR TYR A . n A 1 91 ARG 91 110 110 ARG ARG A . n A 1 92 THR 92 111 111 THR THR A . n A 1 93 ASP 93 112 112 ASP ASP A . n A 1 94 LEU 94 113 113 LEU LEU A . n A 1 95 GLU 95 114 114 GLU GLU A . n A 1 96 PRO 96 115 115 PRO PRO A . n A 1 97 MSE 97 116 116 MSE MSE A . n A 1 98 TYR 98 117 117 TYR TYR A . n A 1 99 ALA 99 118 118 ALA ALA A . n A 1 100 GLU 100 119 119 GLU GLU A . n A 1 101 ASP 101 120 120 ASP ASP A . n A 1 102 GLU 102 121 121 GLU GLU A . n A 1 103 LYS 103 122 122 LYS LYS A . n A 1 104 ASN 104 123 123 ASN ASN A . n A 1 105 LYS 105 124 124 LYS LYS A . n A 1 106 GLU 106 125 ? ? ? A . n A 1 107 SER 107 126 ? ? ? A . n A 1 108 GLU 108 127 ? ? ? A . n A 1 109 GLY 109 128 ? ? ? A . n A 1 110 SER 110 129 129 SER SER A . n A 1 111 ILE 111 130 130 ILE ILE A . n A 1 112 GLY 112 131 131 GLY GLY A . n A 1 113 ALA 113 132 132 ALA ALA A . n A 1 114 TRP 114 133 133 TRP TRP A . n A 1 115 TYR 115 134 134 TYR TYR A . n A 1 116 SER 116 135 135 SER SER A . n A 1 117 TYR 117 136 136 TYR TYR A . n A 1 118 TYR 118 137 137 TYR TYR A . n A 1 119 LYS 119 138 138 LYS LYS A . n A 1 120 GLY 120 139 139 GLY GLY A . n A 1 121 ILE 121 140 140 ILE ILE A . n A 1 122 GLU 122 141 141 GLU GLU A . n A 1 123 SER 123 142 142 SER SER A . n A 1 124 HIS 124 143 143 HIS HIS A . n A 1 125 VAL 125 144 144 VAL VAL A . n A 1 126 GLN 126 145 145 GLN GLN A . n A 1 127 LEU 127 146 146 LEU LEU A . n A 1 128 TYR 128 147 147 TYR TYR A . n A 1 129 TYR 129 148 148 TYR TYR A . n A 1 130 LYS 130 149 149 LYS LYS A . n A 1 131 ASN 131 150 150 ASN ASN A . n A 1 132 LEU 132 151 151 LEU LEU A . n A 1 133 LEU 133 152 152 LEU LEU A . n A 1 134 VAL 134 153 153 VAL VAL A . n A 1 135 TYR 135 154 154 TYR TYR A . n A 1 136 ARG 136 155 155 ARG ARG A . n A 1 137 ILE 137 156 156 ILE ILE A . n A 1 138 ASN 138 157 157 ASN ASN A . n A 1 139 TYR 139 158 158 TYR TYR A . n A 1 140 ASN 140 159 159 ASN ASN A . n A 1 141 GLU 141 160 160 GLU GLU A . n A 1 142 TYR 142 161 161 TYR TYR A . n A 1 143 THR 143 162 162 THR THR A . n A 1 144 GLY 144 163 163 GLY GLY A . n A 1 145 GLY 145 164 164 GLY GLY A . n A 1 146 ALA 146 165 165 ALA ALA A . n A 1 147 HIS 147 166 166 HIS HIS A . n A 1 148 GLY 148 167 167 GLY GLY A . n A 1 149 ILE 149 168 168 ILE ILE A . n A 1 150 TYR 150 169 169 TYR TYR A . n A 1 151 MSE 151 170 170 MSE MSE A . n A 1 152 THR 152 171 171 THR THR A . n A 1 153 THR 153 172 172 THR THR A . n A 1 154 PHE 154 173 173 PHE PHE A . n A 1 155 LEU 155 174 174 LEU LEU A . n A 1 156 ASN 156 175 175 ASN ASN A . n A 1 157 MSE 157 176 176 MSE MSE A . n A 1 158 ASP 158 177 177 ASP ASP A . n A 1 159 LEU 159 178 178 LEU LEU A . n A 1 160 ILE 160 179 179 ILE ILE A . n A 1 161 ASN 161 180 180 ASN ASN A . n A 1 162 LEU 162 181 181 LEU LEU A . n A 1 163 ARG 163 182 182 ARG ARG A . n A 1 164 PRO 164 183 183 PRO PRO A . n A 1 165 LEU 165 184 184 LEU LEU A . n A 1 166 LYS 166 185 185 LYS LYS A . n A 1 167 LEU 167 186 186 LEU LEU A . n A 1 168 ASP 168 187 187 ASP ASP A . n A 1 169 ASP 169 188 188 ASP ASP A . n A 1 170 ILE 170 189 189 ILE ILE A . n A 1 171 PHE 171 190 190 PHE PHE A . n A 1 172 THR 172 191 191 THR THR A . n A 1 173 GLY 173 192 192 GLY GLY A . n A 1 174 ASP 174 193 193 ASP ASP A . n A 1 175 TYR 175 194 194 TYR TYR A . n A 1 176 LYS 176 195 195 LYS LYS A . n A 1 177 GLU 177 196 196 GLU GLU A . n A 1 178 ALA 178 197 197 ALA ALA A . n A 1 179 LEU 179 198 198 LEU LEU A . n A 1 180 THR 180 199 199 THR THR A . n A 1 181 ASP 181 200 200 ASP ASP A . n A 1 182 LEU 182 201 201 LEU LEU A . n A 1 183 LEU 183 202 202 LEU LEU A . n A 1 184 TRP 184 203 203 TRP TRP A . n A 1 185 ASN 185 204 204 ASN ASN A . n A 1 186 GLN 186 205 205 GLN GLN A . n A 1 187 LEU 187 206 206 LEU LEU A . n A 1 188 MSE 188 207 207 MSE MSE A . n A 1 189 ALA 189 208 208 ALA ALA A . n A 1 190 ASP 190 209 209 ASP ASP A . n A 1 191 LYS 191 210 210 LYS LYS A . n A 1 192 LYS 192 211 211 LYS LYS A . n A 1 193 VAL 193 212 212 VAL VAL A . n A 1 194 THR 194 213 213 THR THR A . n A 1 195 THR 195 214 214 THR THR A . n A 1 196 HIS 196 215 215 HIS HIS A . n A 1 197 GLU 197 216 216 GLU GLU A . n A 1 198 ALA 198 217 217 ALA ALA A . n A 1 199 LEU 199 218 218 LEU LEU A . n A 1 200 GLU 200 219 219 GLU GLU A . n A 1 201 ASP 201 220 220 ASP ASP A . n A 1 202 MSE 202 221 221 MSE MSE A . n A 1 203 GLY 203 222 222 GLY GLY A . n A 1 204 TYR 204 223 223 TYR TYR A . n A 1 205 GLY 205 224 224 GLY GLY A . n A 1 206 SER 206 225 225 SER SER A . n A 1 207 THR 207 226 226 THR THR A . n A 1 208 GLY 208 227 227 GLY GLY A . n A 1 209 ASP 209 228 228 ASP ASP A . n A 1 210 ILE 210 229 229 ILE ILE A . n A 1 211 ALA 211 230 230 ALA ALA A . n A 1 212 PRO 212 231 231 PRO PRO A . n A 1 213 THR 213 232 232 THR THR A . n A 1 214 GLU 214 233 233 GLU GLU A . n A 1 215 ASN 215 234 234 ASN ASN A . n A 1 216 PHE 216 235 235 PHE PHE A . n A 1 217 TYR 217 236 236 TYR TYR A . n A 1 218 LEU 218 237 237 LEU LEU A . n A 1 219 ASP 219 238 238 ASP ASP A . n A 1 220 LYS 220 239 239 LYS LYS A . n A 1 221 ASP 221 240 240 ASP ASP A . n A 1 222 GLY 222 241 241 GLY GLY A . n A 1 223 ILE 223 242 242 ILE ILE A . n A 1 224 THR 224 243 243 THR THR A . n A 1 225 PHE 225 244 244 PHE PHE A . n A 1 226 TYR 226 245 245 TYR TYR A . n A 1 227 TYR 227 246 246 TYR TYR A . n A 1 228 ASN 228 247 247 ASN ASN A . n A 1 229 VAL 229 248 248 VAL VAL A . n A 1 230 TYR 230 249 249 TYR TYR A . n A 1 231 ASP 231 250 250 ASP ASP A . n A 1 232 ILE 232 251 251 ILE ILE A . n A 1 233 THR 233 252 252 THR THR A . n A 1 234 PRO 234 253 253 PRO PRO A . n A 1 235 TYR 235 254 254 TYR TYR A . n A 1 236 ALA 236 255 255 ALA ALA A . n A 1 237 MSE 237 256 256 MSE MSE A . n A 1 238 GLY 238 257 257 GLY GLY A . n A 1 239 PRO 239 258 258 PRO PRO A . n A 1 240 VAL 240 259 259 VAL VAL A . n A 1 241 GLU 241 260 260 GLU GLU A . n A 1 242 ILE 242 261 261 ILE ILE A . n A 1 243 LYS 243 262 262 LYS LYS A . n A 1 244 ILE 244 263 263 ILE ILE A . n A 1 245 PRO 245 264 264 PRO PRO A . n A 1 246 TYR 246 265 265 TYR TYR A . n A 1 247 GLU 247 266 266 GLU GLU A . n A 1 248 MSE 248 267 267 MSE MSE A . n A 1 249 MSE 249 268 268 MSE MSE A . n A 1 250 GLU 250 269 269 GLU GLU A . n A 1 251 HIS 251 270 270 HIS HIS A . n A 1 252 MSE 252 271 271 MSE MSE A . n A 1 253 LEU 253 272 272 LEU LEU A . n A 1 254 GLY 254 273 273 GLY GLY A . n A 1 255 SER 255 274 274 SER SER A . n A 1 256 ASN 256 275 275 ASN ASN A . n A 1 257 PRO 257 276 276 PRO PRO A . n A 1 258 ILE 258 277 277 ILE ILE A . n A 1 259 ILE 259 278 278 ILE ILE A . n A 1 260 GLY 260 279 279 GLY GLY A . n A 1 261 GLU 261 280 280 GLU GLU A . n A 1 262 MSE 262 281 281 MSE MSE A . n A 1 263 LYS 263 282 282 LYS LYS A . n A 1 264 SER 264 283 283 SER SER A . n A 1 265 LYS 265 284 284 LYS LYS A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 1 285 285 PO4 PO4 A . C 2 PO4 1 286 286 PO4 PO4 A . D 3 MPD 1 287 287 MPD MPD A . E 3 MPD 1 288 288 MPD MPD A . F 3 MPD 1 289 289 MPD MPD A . G 4 CL 1 290 290 CL CL A . H 5 HOH 1 291 291 HOH HOH A . H 5 HOH 2 292 292 HOH HOH A . H 5 HOH 3 293 293 HOH HOH A . H 5 HOH 4 294 294 HOH HOH A . H 5 HOH 5 295 295 HOH HOH A . H 5 HOH 6 296 296 HOH HOH A . H 5 HOH 7 297 297 HOH HOH A . H 5 HOH 8 298 298 HOH HOH A . H 5 HOH 9 299 299 HOH HOH A . H 5 HOH 10 300 300 HOH HOH A . H 5 HOH 11 301 301 HOH HOH A . H 5 HOH 12 302 302 HOH HOH A . H 5 HOH 13 303 303 HOH HOH A . H 5 HOH 14 304 304 HOH HOH A . H 5 HOH 15 305 305 HOH HOH A . H 5 HOH 16 306 306 HOH HOH A . H 5 HOH 17 307 307 HOH HOH A . H 5 HOH 18 308 308 HOH HOH A . H 5 HOH 19 309 309 HOH HOH A . H 5 HOH 20 310 310 HOH HOH A . H 5 HOH 21 311 311 HOH HOH A . H 5 HOH 22 312 312 HOH HOH A . H 5 HOH 23 313 313 HOH HOH A . H 5 HOH 24 314 314 HOH HOH A . H 5 HOH 25 315 315 HOH HOH A . H 5 HOH 26 316 316 HOH HOH A . H 5 HOH 27 317 317 HOH HOH A . H 5 HOH 28 318 318 HOH HOH A . H 5 HOH 29 319 319 HOH HOH A . H 5 HOH 30 320 320 HOH HOH A . H 5 HOH 31 321 321 HOH HOH A . H 5 HOH 32 322 322 HOH HOH A . H 5 HOH 33 323 323 HOH HOH A . H 5 HOH 34 324 324 HOH HOH A . H 5 HOH 35 325 325 HOH HOH A . H 5 HOH 36 326 326 HOH HOH A . H 5 HOH 37 327 327 HOH HOH A . H 5 HOH 38 328 328 HOH HOH A . H 5 HOH 39 329 329 HOH HOH A . H 5 HOH 40 330 330 HOH HOH A . H 5 HOH 41 331 331 HOH HOH A . H 5 HOH 42 332 332 HOH HOH A . H 5 HOH 43 333 333 HOH HOH A . H 5 HOH 44 334 334 HOH HOH A . H 5 HOH 45 335 335 HOH HOH A . H 5 HOH 46 336 336 HOH HOH A . H 5 HOH 47 337 337 HOH HOH A . H 5 HOH 48 338 338 HOH HOH A . H 5 HOH 49 339 339 HOH HOH A . H 5 HOH 50 340 340 HOH HOH A . H 5 HOH 51 341 341 HOH HOH A . H 5 HOH 52 342 342 HOH HOH A . H 5 HOH 53 343 343 HOH HOH A . H 5 HOH 54 344 344 HOH HOH A . H 5 HOH 55 345 345 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 97 A MSE 116 ? MET SELENOMETHIONINE 2 A MSE 151 A MSE 170 ? MET SELENOMETHIONINE 3 A MSE 157 A MSE 176 ? MET SELENOMETHIONINE 4 A MSE 188 A MSE 207 ? MET SELENOMETHIONINE 5 A MSE 202 A MSE 221 ? MET SELENOMETHIONINE 6 A MSE 237 A MSE 256 ? MET SELENOMETHIONINE 7 A MSE 248 A MSE 267 ? MET SELENOMETHIONINE 8 A MSE 249 A MSE 268 ? MET SELENOMETHIONINE 9 A MSE 252 A MSE 271 ? MET SELENOMETHIONINE 10 A MSE 262 A MSE 281 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5230 ? 1 MORE -83 ? 1 'SSA (A^2)' 22820 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_675 x-y+1,-y+2,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 170.3125559082 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-07-20 4 'Structure model' 1 3 2011-11-16 5 'Structure model' 1 4 2017-10-25 6 'Structure model' 1 5 2018-01-24 7 'Structure model' 1 6 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Structure summary' 4 5 'Structure model' 'Author supporting evidence' 5 5 'Structure model' 'Refinement description' 6 6 'Structure model' 'Database references' 7 7 'Structure model' 'Database references' 8 7 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' pdbx_struct_assembly_auth_evidence 2 5 'Structure model' software 3 6 'Structure model' citation_author 4 7 'Structure model' database_2 5 7 'Structure model' struct_conn 6 7 'Structure model' struct_ref_seq_dif 7 7 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_software.classification' 2 5 'Structure model' '_software.name' 3 6 'Structure model' '_citation_author.name' 4 7 'Structure model' '_database_2.pdbx_DOI' 5 7 'Structure model' '_database_2.pdbx_database_accession' 6 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 7 'Structure model' '_struct_ref_seq_dif.details' 8 7 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 7 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 7 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -14.4734 _pdbx_refine_tls.origin_y 77.2567 _pdbx_refine_tls.origin_z 7.4522 _pdbx_refine_tls.T[1][1] -0.2316 _pdbx_refine_tls.T[2][2] 0.0716 _pdbx_refine_tls.T[3][3] -0.1524 _pdbx_refine_tls.T[1][2] 0.0312 _pdbx_refine_tls.T[1][3] -0.0173 _pdbx_refine_tls.T[2][3] -0.0260 _pdbx_refine_tls.L[1][1] 2.5648 _pdbx_refine_tls.L[2][2] 1.3425 _pdbx_refine_tls.L[3][3] 1.8410 _pdbx_refine_tls.L[1][2] 0.7705 _pdbx_refine_tls.L[1][3] 0.8604 _pdbx_refine_tls.L[2][3] 0.2924 _pdbx_refine_tls.S[1][1] 0.0621 _pdbx_refine_tls.S[2][2] 0.1102 _pdbx_refine_tls.S[3][3] -0.1723 _pdbx_refine_tls.S[1][2] 0.0310 _pdbx_refine_tls.S[1][3] -0.2061 _pdbx_refine_tls.S[2][3] -0.3203 _pdbx_refine_tls.S[2][1] -0.0601 _pdbx_refine_tls.S[3][1] 0.0725 _pdbx_refine_tls.S[3][2] 0.6375 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 28 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 284 _pdbx_refine_tls_group.selection_details '{ A|28 - 284 }' _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 SCALA 3.3.15 ? package 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' ? ? ? 6 BUSTER-TNT 2.8.0 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 7 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 BUSTER 2.8.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.entry_id 3S5T _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (RESIDUES 21-284) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 149 ? ? 47.95 -110.70 2 1 TYR A 249 ? ? 85.77 -27.05 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 28 ? CG ? A LYS 9 CG 2 1 Y 1 A LYS 28 ? CD ? A LYS 9 CD 3 1 Y 1 A LYS 28 ? CE ? A LYS 9 CE 4 1 Y 1 A LYS 28 ? NZ ? A LYS 9 NZ 5 1 Y 1 A LYS 71 ? CD ? A LYS 52 CD 6 1 Y 1 A LYS 71 ? CE ? A LYS 52 CE 7 1 Y 1 A LYS 71 ? NZ ? A LYS 52 NZ 8 1 Y 1 A LYS 122 ? CE ? A LYS 103 CE 9 1 Y 1 A LYS 122 ? NZ ? A LYS 103 NZ 10 1 Y 1 A LYS 124 ? CG ? A LYS 105 CG 11 1 Y 1 A LYS 124 ? CD ? A LYS 105 CD 12 1 Y 1 A LYS 124 ? CE ? A LYS 105 CE 13 1 Y 1 A LYS 124 ? NZ ? A LYS 105 NZ 14 1 Y 1 A ASP 193 ? CG ? A ASP 174 CG 15 1 Y 1 A ASP 193 ? OD1 ? A ASP 174 OD1 16 1 Y 1 A ASP 193 ? OD2 ? A ASP 174 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A SER 21 ? A SER 2 3 1 Y 1 A CYS 22 ? A CYS 3 4 1 Y 1 A GLY 23 ? A GLY 4 5 1 Y 1 A ASP 24 ? A ASP 5 6 1 Y 1 A LYS 25 ? A LYS 6 7 1 Y 1 A MSE 26 ? A MSE 7 8 1 Y 1 A ASN 27 ? A ASN 8 9 1 Y 1 A GLU 125 ? A GLU 106 10 1 Y 1 A SER 126 ? A SER 107 11 1 Y 1 A GLU 127 ? A GLU 108 12 1 Y 1 A GLY 128 ? A GLY 109 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 4 'CHLORIDE ION' CL 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #