HEADER HYDROLASE 25-MAY-11 3S6B TITLE CRYSTAL STRUCTURE OF METHIONINE AMINOPEPTIDASE 1B FROM PLASMODIUM TITLE 2 FALCIPARUM, PF10_0150 COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.11.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 GENE: PF10_0150; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28MLH KEYWDS MALARIA, PROTEOLYSIS, "PITA BREAD" FOLD, PEPTIDASE, STRUCTURAL KEYWDS 2 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.K.WERNIMONT,J.D.ARTZ,L.CROMBET,J.LEW,J.WEADGE,W.TEMPEL, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT,C.BOUNTRA,R.HUI,T.HILLS, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 13-SEP-23 3S6B 1 REMARK SEQADV LINK REVDAT 2 08-NOV-17 3S6B 1 REMARK REVDAT 1 29-JUN-11 3S6B 0 JRNL AUTH A.K.WERNIMONT,J.D.ARTZ,L.CROMBET,J.LEW,J.WEADGE, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT,C.BOUNTRA,R.HUI,T.HILLS JRNL TITL CRYSTAL STRUCTURE OF METHIONINE AMINOPEPTIDASE 1B FROM JRNL TITL 2 PLASMODIUM FALCIPARUM, PF10_0150 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 25316 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1297 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1640 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2779 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 176 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.07000 REMARK 3 B22 (A**2) : -0.80000 REMARK 3 B33 (A**2) : -0.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.911 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2992 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4077 ; 1.413 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 371 ; 5.642 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;35.926 ;24.380 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 513 ;14.372 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;16.617 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 439 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2304 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1809 ; 0.612 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2980 ; 1.077 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1183 ; 2.007 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1097 ; 3.103 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 367 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2306 16.2771 13.9547 REMARK 3 T TENSOR REMARK 3 T11: 0.0163 T22: 0.0169 REMARK 3 T33: 0.0144 T12: 0.0126 REMARK 3 T13: -0.0043 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.6576 L22: 0.4896 REMARK 3 L33: 0.7611 L12: 0.1177 REMARK 3 L13: 0.1291 L23: -0.0580 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: -0.0649 S13: 0.0079 REMARK 3 S21: 0.0182 S22: -0.0049 S23: -0.0231 REMARK 3 S31: 0.0067 S32: -0.0064 S33: 0.0036 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 3S6B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1000065815. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27052 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.63700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2B3H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG3350, 0.2 M AMMONIUM ACETATE, REMARK 280 0.1 M TRIS, 2 MM TCEP, 20 % GLYCEROL, PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.29050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 ARG A 11 REMARK 465 GLU A 12 REMARK 465 ASN A 13 REMARK 465 LEU A 14 REMARK 465 TYR A 15 REMARK 465 PHE A 16 REMARK 465 GLN A 17 REMARK 465 GLY A 18 REMARK 465 GLU A 19 REMARK 465 LYS A 20 REMARK 465 GLU A 21 REMARK 465 ASP A 22 REMARK 465 ASN A 368 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 23 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 29 CD CE NZ REMARK 470 LYS A 219 CE NZ REMARK 470 GLU A 223 CD OE1 OE2 REMARK 470 LYS A 289 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 319 O HOH A 482 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 87 -3.28 83.16 REMARK 500 ASN A 171 -114.99 59.83 REMARK 500 GLU A 303 58.26 -154.90 REMARK 500 TRP A 320 -53.50 -130.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 370 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 204 OD2 REMARK 620 2 HIS A 270 NE2 82.3 REMARK 620 3 GLU A 303 OE1 136.6 81.4 REMARK 620 4 GLU A 303 OE2 156.3 120.2 49.7 REMARK 620 5 GLU A 334 OE2 81.6 114.2 69.2 81.9 REMARK 620 6 HOH A 385 O 79.7 153.1 125.3 81.4 82.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 371 DBREF 3S6B A 19 368 UNP Q8IJP2 Q8IJP2_PLAF7 168 517 SEQADV 3S6B MET A 1 UNP Q8IJP2 EXPRESSION TAG SEQADV 3S6B HIS A 2 UNP Q8IJP2 EXPRESSION TAG SEQADV 3S6B HIS A 3 UNP Q8IJP2 EXPRESSION TAG SEQADV 3S6B HIS A 4 UNP Q8IJP2 EXPRESSION TAG SEQADV 3S6B HIS A 5 UNP Q8IJP2 EXPRESSION TAG SEQADV 3S6B HIS A 6 UNP Q8IJP2 EXPRESSION TAG SEQADV 3S6B HIS A 7 UNP Q8IJP2 EXPRESSION TAG SEQADV 3S6B SER A 8 UNP Q8IJP2 EXPRESSION TAG SEQADV 3S6B SER A 9 UNP Q8IJP2 EXPRESSION TAG SEQADV 3S6B GLY A 10 UNP Q8IJP2 EXPRESSION TAG SEQADV 3S6B ARG A 11 UNP Q8IJP2 EXPRESSION TAG SEQADV 3S6B GLU A 12 UNP Q8IJP2 EXPRESSION TAG SEQADV 3S6B ASN A 13 UNP Q8IJP2 EXPRESSION TAG SEQADV 3S6B LEU A 14 UNP Q8IJP2 EXPRESSION TAG SEQADV 3S6B TYR A 15 UNP Q8IJP2 EXPRESSION TAG SEQADV 3S6B PHE A 16 UNP Q8IJP2 EXPRESSION TAG SEQADV 3S6B GLN A 17 UNP Q8IJP2 EXPRESSION TAG SEQADV 3S6B GLY A 18 UNP Q8IJP2 EXPRESSION TAG SEQRES 1 A 368 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 368 LEU TYR PHE GLN GLY GLU LYS GLU ASP HIS LEU LYS THR SEQRES 3 A 368 ILE VAL LYS LYS HIS LEU SER PRO GLU ASN PHE ASP PRO SEQRES 4 A 368 THR ASN ARG LYS TYR TRP VAL TYR ASP ASP HIS LEU LYS SEQRES 5 A 368 ASN PHE VAL ASN PHE LYS PHE THR GLY ASP VAL ARG PRO SEQRES 6 A 368 TRP PRO LEU SER LYS ILE ASN HIS VAL PRO SER HIS ILE SEQRES 7 A 368 GLU ARG PRO ASP TYR ALA ILE SER SER ILE PRO GLU SER SEQRES 8 A 368 GLU LEU ILE TYR LYS ARG LYS SER ASP ILE TYR VAL ASN SEQRES 9 A 368 ASN GLU GLU GLU ILE GLN ARG ILE ARG GLU ALA CYS ILE SEQRES 10 A 368 LEU GLY ARG LYS THR LEU ASP TYR ALA HIS THR LEU VAL SEQRES 11 A 368 SER PRO GLY VAL THR THR ASP GLU ILE ASP ARG LYS VAL SEQRES 12 A 368 HIS GLU PHE ILE ILE LYS ASN ASN ALA TYR PRO SER THR SEQRES 13 A 368 LEU ASN TYR TYR LYS PHE PRO LYS SER CYS CYS THR SER SEQRES 14 A 368 VAL ASN GLU ILE VAL CYS HIS GLY ILE PRO ASP TYR ARG SEQRES 15 A 368 PRO LEU LYS SER GLY ASP ILE ILE ASN ILE ASP ILE SER SEQRES 16 A 368 VAL PHE TYR LYS GLY VAL HIS SER ASP LEU ASN GLU THR SEQRES 17 A 368 TYR PHE VAL GLY ASP ILE ASN ASP VAL PRO LYS GLU GLY SEQRES 18 A 368 LYS GLU LEU VAL GLU THR CYS TYR PHE SER LEU MET GLU SEQRES 19 A 368 ALA ILE LYS LYS CYS LYS PRO GLY MET PHE TYR LYS ASN SEQRES 20 A 368 ILE GLY THR LEU ILE ASP ALA TYR VAL SER LYS LYS ASN SEQRES 21 A 368 PHE SER VAL VAL ARG SER TYR SER GLY HIS GLY VAL GLY SEQRES 22 A 368 LYS LEU PHE HIS SER ASN PRO THR VAL PRO HIS PHE LYS SEQRES 23 A 368 LYS ASN LYS ALA VAL GLY ILE MET LYS PRO GLY HIS VAL SEQRES 24 A 368 PHE THR ILE GLU PRO MET ILE ASN GLN GLY HIS TYR SER SEQRES 25 A 368 ASP VAL LEU TRP PRO ASP GLN TRP THR SER ALA THR SER SEQRES 26 A 368 ASP GLY LYS LEU SER ALA GLN PHE GLU HIS THR LEU LEU SEQRES 27 A 368 ILE THR ASN ASN GLY VAL GLU ILE LEU THR LYS ARG THR SEQRES 28 A 368 GLN ASP SER PRO PRO LEU GLY PHE ASP THR LYS ASP GLU SEQRES 29 A 368 LEU TYR TYR ASN HET GOL A 369 6 HET FE A 370 1 HET GOL A 371 6 HETNAM GOL GLYCEROL HETNAM FE FE (III) ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 3 FE FE 3+ FORMUL 5 HOH *176(H2 O) HELIX 1 1 HIS A 23 LEU A 32 1 10 HELIX 2 2 ARG A 42 ASP A 48 5 7 HELIX 3 3 HIS A 50 VAL A 55 5 6 HELIX 4 4 PRO A 89 ILE A 94 1 6 HELIX 5 5 ASN A 105 LEU A 129 1 25 HELIX 6 6 THR A 135 ASN A 150 1 16 HELIX 7 7 ASN A 158 PHE A 162 5 5 HELIX 8 8 ASP A 213 VAL A 217 5 5 HELIX 9 9 PRO A 218 CYS A 239 1 22 HELIX 10 10 LYS A 246 LYS A 258 1 13 HELIX 11 11 LYS A 362 TYR A 366 5 5 SHEET 1 A 3 TYR A 153 PRO A 154 0 SHEET 2 A 3 ILE A 189 TYR A 198 -1 O PHE A 197 N TYR A 153 SHEET 3 A 3 CYS A 167 VAL A 170 -1 N CYS A 167 O ASP A 193 SHEET 1 B 3 TYR A 153 PRO A 154 0 SHEET 2 B 3 ILE A 189 TYR A 198 -1 O PHE A 197 N TYR A 153 SHEET 3 B 3 VAL A 201 PHE A 210 -1 O TYR A 209 N ILE A 190 SHEET 1 C 3 ILE A 173 CYS A 175 0 SHEET 2 C 3 SER A 322 THR A 324 -1 O SER A 322 N VAL A 174 SHEET 3 C 3 ASP A 313 LEU A 315 -1 N VAL A 314 O ALA A 323 SHEET 1 D 3 SER A 262 VAL A 263 0 SHEET 2 D 3 MET A 305 ASN A 307 -1 O ASN A 307 N SER A 262 SHEET 3 D 3 SER A 330 GLN A 332 -1 O ALA A 331 N ILE A 306 SHEET 1 E 2 GLY A 269 GLY A 271 0 SHEET 2 E 2 SER A 278 VAL A 282 -1 O VAL A 282 N GLY A 269 SHEET 1 F 3 VAL A 299 ILE A 302 0 SHEET 2 F 3 HIS A 335 THR A 340 -1 O LEU A 337 N PHE A 300 SHEET 3 F 3 GLY A 343 ILE A 346 -1 O GLU A 345 N LEU A 338 LINK OD2 ASP A 204 FE FE A 370 1555 1555 2.50 LINK NE2 HIS A 270 FE FE A 370 1555 1555 2.56 LINK OE1 GLU A 303 FE FE A 370 1555 1555 2.50 LINK OE2 GLU A 303 FE FE A 370 1555 1555 2.69 LINK OE2 GLU A 334 FE FE A 370 1555 1555 2.47 LINK FE FE A 370 O HOH A 385 1555 1555 2.68 CISPEP 1 ASN A 279 PRO A 280 0 -0.22 SITE 1 AC1 5 PHE A 230 TYR A 255 LYS A 362 HOH A 450 SITE 2 AC1 5 HOH A 527 SITE 1 AC2 6 ASP A 204 HIS A 270 GLU A 303 GLU A 334 SITE 2 AC2 6 HOH A 385 HOH A 518 SITE 1 AC3 6 LYS A 121 ASP A 124 TYR A 125 THR A 351 SITE 2 AC3 6 ASP A 353 HOH A 530 CRYST1 58.868 52.581 63.506 90.00 116.67 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016987 0.000000 0.008533 0.00000 SCALE2 0.000000 0.019018 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017621 0.00000