HEADER IMMUNE SYSTEM, LIPID BINDING PROTEIN 25-MAY-11 3S6C TITLE STRUCTURE OF HUMAN CD1E CAVEAT 3S6C FUC B 2 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-2-MICROGLOBULIN, T-CELL SURFACE GLYCOPROTEIN CD1E, COMPND 3 MEMBRANE-ASSOCIATED; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: P61769 RESIDUES 21-119, P15812 RESIDUES 32-303; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: FUSION OF BETA-2 MICROGLOBULIN AND CD1E HEAVY CHAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: B2M, CD1E; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: M10; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFUSE-MIGG1 KEYWDS MHC, IMMUNOGLOBULIN DOMAIN, IMMUNE SYSTEM, ANTIGEN PRESENTATION, N- KEYWDS 2 GLYCOSYLATION, INTRACELLULAR, LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.F.GARCIA-ALLES,L.MAVEYRAUD,S.TRANIER,L.MOUREY REVDAT 5 29-JUL-20 3S6C 1 CAVEAT COMPND REMARK SEQADV REVDAT 5 2 1 HETNAM SSBOND LINK SITE REVDAT 5 3 1 ATOM REVDAT 4 08-NOV-17 3S6C 1 REMARK REVDAT 3 23-AUG-17 3S6C 1 SOURCE REMARK REVDAT 2 31-AUG-11 3S6C 1 JRNL HETATM REVDAT 1 20-JUL-11 3S6C 0 JRNL AUTH L.F.GARCIA-ALLES,G.GIACOMETTI,C.VERSLUIS,L.MAVEYRAUD, JRNL AUTH 2 D.DE PAEPE,J.GUIARD,S.TRANIER,M.GILLERON,J.PRANDI,D.HANAU, JRNL AUTH 3 A.J.HECK,L.MORI,G.DE LIBERO,G.PUZO,L.MOUREY,H.DE LA SALLE JRNL TITL CRYSTAL STRUCTURE OF HUMAN CD1E REVEALS A GROOVE SUITED FOR JRNL TITL 2 LIPID-EXCHANGE PROCESSES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 13230 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21788486 JRNL DOI 10.1073/PNAS.1105627108 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 12460 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 664 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 904 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2861 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.10000 REMARK 3 B22 (A**2) : 1.79000 REMARK 3 B33 (A**2) : -0.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.429 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.400 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 48.092 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2986 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1966 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4065 ; 1.832 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4747 ; 0.995 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 371 ; 8.155 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;39.063 ;23.688 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 427 ;21.749 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.875 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 424 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3404 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 644 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1849 ; 0.637 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 755 ; 0.098 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2935 ; 1.192 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1137 ; 1.666 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1129 ; 2.910 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 277 REMARK 3 ORIGIN FOR THE GROUP (A): -21.1600 14.0880 -18.9590 REMARK 3 T TENSOR REMARK 3 T11: 0.6546 T22: 0.5777 REMARK 3 T33: 0.4919 T12: 0.0245 REMARK 3 T13: 0.0193 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 10.0986 L22: 0.7863 REMARK 3 L33: 1.1776 L12: -1.4774 REMARK 3 L13: 2.5439 L23: -0.1633 REMARK 3 S TENSOR REMARK 3 S11: -0.1871 S12: -1.2030 S13: 0.0025 REMARK 3 S21: 0.2572 S22: 0.2219 S23: 0.2094 REMARK 3 S31: 0.1215 S32: 0.1438 S33: -0.0348 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1001 A 1100 REMARK 3 ORIGIN FOR THE GROUP (A): -22.5250 26.9770 -31.8750 REMARK 3 T TENSOR REMARK 3 T11: 0.6316 T22: 0.5483 REMARK 3 T33: 0.9849 T12: -0.1245 REMARK 3 T13: -0.2444 T23: 0.1363 REMARK 3 L TENSOR REMARK 3 L11: 10.4824 L22: 4.9921 REMARK 3 L33: 0.9617 L12: -2.4105 REMARK 3 L13: -2.9900 L23: 0.7625 REMARK 3 S TENSOR REMARK 3 S11: 0.4176 S12: 0.5197 S13: 1.6816 REMARK 3 S21: -0.4095 S22: -0.0793 S23: 0.2490 REMARK 3 S31: -0.2474 S32: 0.0652 S33: -0.3383 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. B-FACTORS WERE REFINED ISOTROPICALLY, BUT ARE REMARK 3 REPORTED AS ANISOTROPIC BECAUSE OF THE TLS CONTRIBUTION THAT IS REMARK 3 ADDED TO THE REFINED ISOTROPIC VALUE REMARK 4 REMARK 4 3S6C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000065816. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9395 REMARK 200 MONOCHROMATOR : KHOZU MONOCHROMATOR WITH DUAL REMARK 200 PARALLEL SI(111) CRYSTALS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12460 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 103.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.37200 REMARK 200 R SYM FOR SHELL (I) : 0.37200 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 6000, 0.2 M SODIUM MALONATE, REMARK 280 0.1 M MAGNESIUM VALERATE, 0.1 M SODIUM BORATE , PH 3.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 103.14450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.96500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 103.14450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.96500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1101 REMARK 465 ASP A 1102 REMARK 465 ASP A 1103 REMARK 465 LYS A 1104 REMARK 465 GLY A 1105 REMARK 465 SER A 1106 REMARK 465 SER A 1107 REMARK 465 SER A 1108 REMARK 465 SER A 1109 REMARK 465 ASP A 1110 REMARK 465 ASP A 1111 REMARK 465 ASP A 1112 REMARK 465 ASP A 1113 REMARK 465 LYS A 1114 REMARK 465 GLU A 1 REMARK 465 GLU A 2 REMARK 465 GLN A 120 REMARK 465 GLY A 121 REMARK 465 ILE A 122 REMARK 465 GLN A 278 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A1006 CD CE NZ REMARK 470 ILE A1007 CD1 REMARK 470 LYS A1041 CG CD CE NZ REMARK 470 GLU A1044 CG CD OE1 OE2 REMARK 470 ARG A1045 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1048 CG CD CE NZ REMARK 470 LYS A1058 CG CD CE NZ REMARK 470 GLU A1069 CG CD OE1 OE2 REMARK 470 LYS A1075 CG CD CE NZ REMARK 470 SER A 18 OG REMARK 470 TRP A 19 CE3 CZ2 CZ3 CH2 REMARK 470 GLU A 23 CD OE1 OE2 REMARK 470 LEU A 31 CG CD1 CD2 REMARK 470 VAL A 39 CG1 CG2 REMARK 470 LEU A 40 CD1 CD2 REMARK 470 LEU A 46 CD1 CD2 REMARK 470 LYS A 47 CD CE NZ REMARK 470 PHE A 54 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 LEU A 59 CD1 REMARK 470 LYS A 60 CE NZ REMARK 470 LEU A 68 CD1 CD2 REMARK 470 ILE A 74 CG1 CD1 REMARK 470 ILE A 76 CD1 REMARK 470 LEU A 95 CD1 CD2 REMARK 470 ARG A 99 CG CD NE CZ NH1 NH2 REMARK 470 MET A 100 CG SD CE REMARK 470 ASN A 101 CG OD1 ND2 REMARK 470 GLN A 104 CG CD OE1 NE2 REMARK 470 ILE A 105 CG1 CG2 CD1 REMARK 470 GLU A 125 CD OE1 OE2 REMARK 470 ILE A 132 CG1 CG2 CD1 REMARK 470 ILE A 137 CD1 REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 LEU A 155 CD1 REMARK 470 ARG A 161 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 163 CD1 REMARK 470 LEU A 166 CG CD1 CD2 REMARK 470 SER A 172 OG REMARK 470 LYS A 175 CG CD CE NZ REMARK 470 SER A 189 OG REMARK 470 LEU A 195 CG CD1 CD2 REMARK 470 LEU A 197 CG CD1 CD2 REMARK 470 ILE A 268 CD1 REMARK 470 ASN A 274 CG OD1 ND2 REMARK 470 PHE A 277 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 33 O PHE A 45 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A1014 C - N - CA ANGL. DEV. = -13.0 DEGREES REMARK 500 LEU A 117 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 VAL A 201 CB - CA - C ANGL. DEV. = -11.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A1010 149.55 -170.67 REMARK 500 ASN A1017 63.32 63.35 REMARK 500 ASP A1034 96.73 -63.90 REMARK 500 ILE A1046 -162.02 -104.13 REMARK 500 GLU A1047 -62.60 -134.07 REMARK 500 TRP A1060 -21.02 79.57 REMARK 500 SER A1061 150.99 -49.48 REMARK 500 PHE A1070 157.90 165.77 REMARK 500 LYS A1075 -142.69 -74.39 REMARK 500 ASP A1076 85.74 64.33 REMARK 500 HIS A1084 118.71 -170.80 REMARK 500 VAL A1085 -58.45 -6.56 REMARK 500 GLN A1089 147.84 -175.77 REMARK 500 ASP A1098 34.14 -87.07 REMARK 500 MET A1099 -53.38 77.19 REMARK 500 LEU A 4 59.71 23.94 REMARK 500 VAL A 39 -75.64 -53.86 REMARK 500 LEU A 46 -102.09 77.86 REMARK 500 TRP A 49 3.75 -59.13 REMARK 500 ALA A 79 -82.38 -53.57 REMARK 500 SER A 80 -36.62 -35.05 REMARK 500 ALA A 81 -65.67 -14.09 REMARK 500 ARG A 99 127.36 160.25 REMARK 500 MET A 100 169.17 75.84 REMARK 500 ASN A 101 56.32 72.43 REMARK 500 ALA A 102 115.71 55.73 REMARK 500 GLN A 104 -55.17 146.25 REMARK 500 LEU A 107 108.09 177.03 REMARK 500 ASP A 115 115.43 -37.07 REMARK 500 LEU A 117 144.99 -172.97 REMARK 500 LYS A 139 -71.06 -55.57 REMARK 500 GLU A 171 -80.30 41.47 REMARK 500 LYS A 175 39.18 -70.55 REMARK 500 PRO A 180 -149.23 -70.14 REMARK 500 GLU A 181 137.87 -178.85 REMARK 500 TRP A 183 -157.18 -147.14 REMARK 500 PRO A 192 -155.74 -67.86 REMARK 500 GLN A 196 62.72 -179.56 REMARK 500 HIS A 200 54.10 -162.72 REMARK 500 MET A 214 -166.12 -110.60 REMARK 500 ARG A 215 98.39 176.54 REMARK 500 GLN A 218 94.15 -60.17 REMARK 500 ASP A 233 34.40 -79.71 REMARK 500 SER A 253 -164.09 -107.96 REMARK 500 HIS A 258 143.10 -174.58 REMARK 500 GLU A 273 51.22 -95.53 REMARK 500 LEU A 275 118.65 -161.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 274 LEU A 275 -140.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS POSITION IS SUBJET TO POLYMORPHISM IN UNP ENTRY P15812, GLN OR REMARK 999 ARG BEING POSSIBLE DBREF 3S6C A 1001 1099 UNP P61769 B2MG_HUMAN 21 119 DBREF 3S6C A 1 272 UNP P15812 CD1E_HUMAN 32 303 SEQADV 3S6C ASP A 1100 UNP P61769 LINKER SEQADV 3S6C ASP A 1101 UNP P61769 LINKER SEQADV 3S6C ASP A 1102 UNP P61769 LINKER SEQADV 3S6C ASP A 1103 UNP P61769 LINKER SEQADV 3S6C LYS A 1104 UNP P61769 LINKER SEQADV 3S6C GLY A 1105 UNP P61769 LINKER SEQADV 3S6C SER A 1106 UNP P61769 LINKER SEQADV 3S6C SER A 1107 UNP P61769 LINKER SEQADV 3S6C SER A 1108 UNP P61769 LINKER SEQADV 3S6C SER A 1109 UNP P61769 LINKER SEQADV 3S6C ASP A 1110 UNP P61769 LINKER SEQADV 3S6C ASP A 1111 UNP P61769 LINKER SEQADV 3S6C ASP A 1112 UNP P61769 LINKER SEQADV 3S6C ASP A 1113 UNP P61769 LINKER SEQADV 3S6C LYS A 1114 UNP P61769 LINKER SEQADV 3S6C ARG A 75 UNP P15812 GLN 106 SEE REMARK 999 SEQADV 3S6C GLU A 273 UNP P15812 EXPRESSION TAG SEQADV 3S6C ASN A 274 UNP P15812 EXPRESSION TAG SEQADV 3S6C LEU A 275 UNP P15812 EXPRESSION TAG SEQADV 3S6C TYR A 276 UNP P15812 EXPRESSION TAG SEQADV 3S6C PHE A 277 UNP P15812 EXPRESSION TAG SEQADV 3S6C GLN A 278 UNP P15812 EXPRESSION TAG SEQRES 1 A 392 ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG HIS SEQRES 2 A 392 PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS TYR SEQRES 3 A 392 VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP LEU SEQRES 4 A 392 LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SER SEQRES 5 A 392 ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU LEU SEQRES 6 A 392 TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU TYR SEQRES 7 A 392 ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO LYS SEQRES 8 A 392 ILE VAL LYS TRP ASP ARG ASP MET ASP ASP ASP ASP LYS SEQRES 9 A 392 GLY SER SER SER SER ASP ASP ASP ASP LYS GLU GLU GLN SEQRES 10 A 392 LEU SER PHE ARG MET LEU GLN THR SER SER PHE ALA ASN SEQRES 11 A 392 HIS SER TRP ALA HIS SER GLU GLY SER GLY TRP LEU GLY SEQRES 12 A 392 ASP LEU GLN THR HIS GLY TRP ASP THR VAL LEU GLY THR SEQRES 13 A 392 ILE ARG PHE LEU LYS PRO TRP SER HIS GLY ASN PHE SER SEQRES 14 A 392 LYS GLN GLU LEU LYS ASN LEU GLN SER LEU PHE GLN LEU SEQRES 15 A 392 TYR PHE HIS SER PHE ILE ARG ILE VAL GLN ALA SER ALA SEQRES 16 A 392 GLY GLN PHE GLN LEU GLU TYR PRO PHE GLU ILE GLN ILE SEQRES 17 A 392 LEU ALA GLY CYS ARG MET ASN ALA PRO GLN ILE PHE LEU SEQRES 18 A 392 ASN MET ALA TYR GLN GLY SER ASP PHE LEU SER PHE GLN SEQRES 19 A 392 GLY ILE SER TRP GLU PRO SER PRO GLY ALA GLY ILE ARG SEQRES 20 A 392 ALA GLN ASN ILE CYS LYS VAL LEU ASN ARG TYR LEU ASP SEQRES 21 A 392 ILE LYS GLU ILE LEU GLN SER LEU LEU GLY HIS THR CYS SEQRES 22 A 392 PRO ARG PHE LEU ALA GLY LEU MET GLU ALA GLY GLU SER SEQRES 23 A 392 GLU LEU LYS ARG LYS VAL LYS PRO GLU ALA TRP LEU SER SEQRES 24 A 392 CYS GLY PRO SER PRO GLY PRO GLY ARG LEU GLN LEU VAL SEQRES 25 A 392 CYS HIS VAL SER GLY PHE TYR PRO LYS PRO VAL TRP VAL SEQRES 26 A 392 MET TRP MET ARG GLY GLU GLN GLU GLN ARG GLY THR GLN SEQRES 27 A 392 ARG GLY ASP VAL LEU PRO ASN ALA ASP GLU THR TRP TYR SEQRES 28 A 392 LEU ARG ALA THR LEU ASP VAL ALA ALA GLY GLU ALA ALA SEQRES 29 A 392 GLY LEU SER CYS ARG VAL LYS HIS SER SER LEU GLY GLY SEQRES 30 A 392 HIS ASP LEU ILE ILE HIS TRP GLY GLY GLU ASN LEU TYR SEQRES 31 A 392 PHE GLN MODRES 3S6C ASN A 16 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET FUC B 2 10 HET GOL A2003 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG C8 H15 N O6 FORMUL 2 FUC C6 H12 O5 FORMUL 3 GOL C3 H8 O3 HELIX 1 1 LYS A 47 GLY A 52 5 6 HELIX 2 2 SER A 55 ALA A 81 1 27 HELIX 3 3 GLY A 131 TYR A 144 1 14 HELIX 4 4 TYR A 144 GLU A 171 1 28 HELIX 5 5 ALA A 245 ALA A 250 1 6 SHEET 1 A 4 GLN A1008 SER A1011 0 SHEET 2 A 4 ASN A1021 PHE A1030 -1 O ASN A1024 N TYR A1010 SHEET 3 A 4 PHE A1062 PHE A1070 -1 O LEU A1064 N VAL A1027 SHEET 4 A 4 GLU A1050 HIS A1051 -1 N GLU A1050 O TYR A1067 SHEET 1 B 4 GLN A1008 SER A1011 0 SHEET 2 B 4 ASN A1021 PHE A1030 -1 O ASN A1024 N TYR A1010 SHEET 3 B 4 PHE A1062 PHE A1070 -1 O LEU A1064 N VAL A1027 SHEET 4 B 4 SER A1055 PHE A1056 -1 N SER A1055 O TYR A1063 SHEET 1 C 4 GLU A1044 ARG A1045 0 SHEET 2 C 4 GLU A1036 LYS A1041 -1 N LYS A1041 O GLU A1044 SHEET 3 C 4 TYR A1078 ASN A1083 -1 O ARG A1081 N ASP A1038 SHEET 4 C 4 LYS A1091 LYS A1094 -1 O VAL A1093 N CYS A1080 SHEET 1 D 6 THR A 42 ARG A 44 0 SHEET 2 D 6 LEU A 31 ASP A 37 -1 N ASP A 37 O THR A 42 SHEET 3 D 6 HIS A 21 LEU A 28 -1 N GLY A 26 O HIS A 34 SHEET 4 D 6 PHE A 6 PHE A 14 -1 N LEU A 9 O SER A 25 SHEET 5 D 6 PHE A 90 CYS A 98 -1 O ILE A 94 N GLN A 10 SHEET 6 D 6 ILE A 105 ASN A 108 -1 O PHE A 106 N GLY A 97 SHEET 1 E 2 LEU A 117 SER A 118 0 SHEET 2 E 2 GLU A 125 PRO A 126 -1 O GLU A 125 N SER A 118 SHEET 1 F 3 LEU A 197 VAL A 198 0 SHEET 2 F 3 ALA A 240 LEU A 242 -1 O LEU A 242 N LEU A 197 SHEET 3 F 3 GLN A 224 ARG A 225 -1 N GLN A 224 O THR A 241 SHEET 1 G 3 VAL A 201 SER A 202 0 SHEET 2 G 3 THR A 235 LEU A 238 -1 O LEU A 238 N VAL A 201 SHEET 3 G 3 LEU A 229 ASN A 231 -1 N ASN A 231 O THR A 235 SHEET 1 H 3 TRP A 210 TRP A 213 0 SHEET 2 H 3 CYS A 254 LYS A 257 -1 O ARG A 255 N MET A 212 SHEET 3 H 3 LEU A 266 ILE A 267 -1 O LEU A 266 N VAL A 256 SHEET 1 I 2 HIS A 269 GLY A 271 0 SHEET 2 I 2 ASN A 274 TYR A 276 -1 O ASN A 274 N GLY A 271 SSBOND 1 CYS A 98 CYS A 159 1555 1555 2.05 SSBOND 2 CYS A 199 CYS A 254 1555 1555 2.10 SSBOND 3 CYS A 1025 CYS A 1080 1555 1555 2.02 LINK ND2 ASN A 16 C1 NAG B 1 1555 1555 1.44 LINK O6 NAG B 1 C1 FUC B 2 1555 1555 1.45 CISPEP 1 HIS A 1031 PRO A 1032 0 -15.92 CISPEP 2 TYR A 88 PRO A 89 0 -2.42 CISPEP 3 MET A 100 ASN A 101 0 14.45 CISPEP 4 ALA A 102 PRO A 103 0 -13.28 CISPEP 5 TYR A 205 PRO A 206 0 8.44 CISPEP 6 GLY A 272 GLU A 273 0 2.36 CISPEP 7 TYR A 276 PHE A 277 0 3.23 CRYST1 206.289 45.930 65.628 90.00 91.48 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004848 0.000000 0.000125 0.00000 SCALE2 0.000000 0.021772 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015242 0.00000